PDB Short entry for 5IWM HEADER ISOMERASE 22-MAR-16 5IWM TITLE 2.5A STRUCTURE OF GSK945237 WITH S.AUREUS DNA GYRASE AND DNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: B, D; COMPND 4 FRAGMENT: UNP RESIDUES 409-543, 580-644,UNP RESIDUES 409-543, 580- COMPND 5 644; COMPND 6 EC: 5.99.1.3,5.99.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 10 CHAIN: A, C; COMPND 11 EC: 5.99.1.3; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*TP*TP*CP*AP*CP*CP*GP*CP*AP*CP*A)-3'); COMPND 16 CHAIN: E; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'- COMPND 20 D(*TP*GP*TP*GP*CP*GP*GP*TP*GP*AP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'); COMPND 21 CHAIN: F; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 STRAIN: N315; SOURCE 5 GENE: GYRB, SA0005; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 10 ORGANISM_TAXID: 1280; SOURCE 11 GENE: GYRA, SA0006; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TYPE IIA TOPOISOMERASE, ANTIBACTERIAL, INHIBITOR, ISOMERASE, FUSION KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.D.BAX,T.J.MILES REVDAT 3 10-JAN-24 5IWM 1 LINK REVDAT 2 29-JUN-16 5IWM 1 JRNL REVDAT 1 25-MAY-16 5IWM 0 JRNL AUTH T.J.MILES,A.J.HENNESSY,B.BAX,G.BROOKS,B.S.BROWN,P.BROWN, JRNL AUTH 2 N.CAILLEAU,D.CHEN,S.DABBS,D.T.DAVIES,J.M.ESKEN,I.GIORDANO, JRNL AUTH 3 J.L.HOOVER,G.E.JONES,S.K.KUSALAKUMARI SUKMAR,R.E.MARKWELL, JRNL AUTH 4 E.A.MINTHORN,S.RITTENHOUSE,M.N.GWYNN,N.D.PEARSON JRNL TITL NOVEL TRICYCLICS (E.G., GSK945237) AS POTENT INHIBITORS OF JRNL TITL 2 BACTERIAL TYPE IIA TOPOISOMERASES. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 2464 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27055939 JRNL DOI 10.1016/J.BMCL.2016.03.106 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 62688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10610 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.60000 REMARK 3 B22 (A**2) : -3.60000 REMARK 3 B33 (A**2) : 7.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12782 ; 0.011 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 17591 ; 1.390 ; 1.857 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1371 ; 2.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 546 ;27.506 ;23.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2038 ;10.389 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 121 ;13.814 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1889 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9238 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5445 ; 1.360 ; 1.995 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6823 ; 2.120 ; 2.989 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 7337 ; 1.774 ; 2.135 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 47863 ; 4.780 ;18.638 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.831 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.169 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9611 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2XCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 5000MME, 100MM BISTRIS, PH REMARK 280 6.3, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.78333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 275.56667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 206.67500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 344.45833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.89167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 409 REMARK 465 ASP B 410 REMARK 465 VAL B 411 REMARK 465 ALA B 412 REMARK 465 SER B 413 REMARK 465 LEU B 414 REMARK 465 PRO B 415 REMARK 465 GLY B 416 REMARK 465 ALA B 640 REMARK 465 ASN B 641 REMARK 465 LEU B 642 REMARK 465 ASP B 643 REMARK 465 PHE B 644 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 MET D 409 REMARK 465 ASP D 410 REMARK 465 VAL D 411 REMARK 465 ALA D 412 REMARK 465 SER D 413 REMARK 465 LEU D 414 REMARK 465 PRO D 415 REMARK 465 GLY D 416 REMARK 465 ALA D 640 REMARK 465 ASN D 641 REMARK 465 LEU D 642 REMARK 465 ASP D 643 REMARK 465 PHE D 644 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 LEU C 4 REMARK 465 PRO C 5 REMARK 465 GLN C 6 REMARK 465 SER C 7 REMARK 465 ARG C 8 REMARK 465 ILE C 9 REMARK 465 GLY C 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 417 CG CD CE NZ REMARK 470 ILE A 9 CG1 CG2 CD1 REMARK 470 LYS D 417 CG CD CE NZ REMARK 470 LYS D 607 CG CD CE NZ REMARK 470 ASP D 624 CG OD1 OD2 REMARK 470 LYS C 227 CD CE NZ REMARK 470 ARG C 431 CD NE CZ NH1 NH2 REMARK 470 LEU C 490 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU C 393 N1 DA E 1 1445 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 590 CA GLN B 590 C 0.158 REMARK 500 GLU A 20 CA GLU A 20 C 0.167 REMARK 500 GLY D 446 C GLY D 446 O -0.114 REMARK 500 ARG D 447 CZ ARG D 447 NH2 -0.081 REMARK 500 ASP D 448 C ASP D 448 O -0.121 REMARK 500 TRP D 592 CG TRP D 592 CD1 -0.087 REMARK 500 TRP D 592 CD1 TRP D 592 NE1 -0.128 REMARK 500 TRP D 592 CE2 TRP D 592 CD2 -0.073 REMARK 500 TRP D 592 CE3 TRP D 592 CZ3 -0.103 REMARK 500 GLY C 341 C ARG C 342 N -0.205 REMARK 500 GLY C 341 C ARG C 342 N -0.213 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 590 CA - C - O ANGL. DEV. = 15.0 DEGREES REMARK 500 GLN B 590 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG D 447 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG D 447 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 GLY C 341 O - C - N ANGL. DEV. = -16.9 DEGREES REMARK 500 GLY C 341 O - C - N ANGL. DEV. = -16.6 DEGREES REMARK 500 DC F 12 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC F 19 C3' - O3' - P ANGL. DEV. = 19.6 DEGREES REMARK 500 DT F 20 O3' - P - O5' ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 457 -156.92 -91.86 REMARK 500 GLU B 609 -73.09 -91.54 REMARK 500 ARG A 33 -74.07 -175.58 REMARK 500 ALA A 162 71.26 49.21 REMARK 500 ARG A 163 2.74 -68.59 REMARK 500 PRO A 165 73.19 -64.47 REMARK 500 ALA A 176 -148.95 -110.09 REMARK 500 ASN A 201 89.12 -159.96 REMARK 500 ALA A 221 -120.94 57.86 REMARK 500 ASP A 311 -2.70 80.06 REMARK 500 LEU D 457 -156.38 -100.09 REMARK 500 ALA D 509 49.86 -84.38 REMARK 500 GLU D 609 -71.06 -91.14 REMARK 500 ARG C 33 -64.48 -161.47 REMARK 500 ALA C 162 79.96 44.82 REMARK 500 PRO C 165 80.69 -67.86 REMARK 500 ALA C 176 -141.78 -119.11 REMARK 500 ALA C 221 -122.60 54.38 REMARK 500 ASP C 311 -9.00 77.44 REMARK 500 PRO C 326 8.82 -61.44 REMARK 500 ASN C 334 84.74 -152.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP C 287 12.37 REMARK 500 GLY C 341 15.48 REMARK 500 GLY C 341 14.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 435 OE2 REMARK 620 2 ASP B 508 OD2 90.8 REMARK 620 3 HOH B 803 O 156.1 95.7 REMARK 620 4 HOH B 814 O 75.1 118.0 81.5 REMARK 620 5 DG E 8 O3' 85.5 152.6 98.6 87.3 REMARK 620 6 DG E 9 OP1 95.3 95.0 106.9 145.3 58.4 REMARK 620 7 DG F 9 OP1 99.3 97.7 102.5 143.6 56.3 4.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 435 OE2 REMARK 620 2 ASP D 508 OD2 80.3 REMARK 620 3 HOH D1106 O 81.7 107.2 REMARK 620 4 HOH D1121 O 150.3 92.2 73.0 REMARK 620 5 DG E 8 O3' 89.8 145.5 103.9 111.1 REMARK 620 6 DG E 9 OP1 107.9 91.6 160.3 101.0 60.0 REMARK 620 7 DT F 8 O3' 92.3 150.8 99.6 106.9 5.4 63.6 REMARK 620 8 DG F 9 OP1 99.0 89.8 162.8 109.8 58.9 8.9 63.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6EJ F 101 DBREF 5IWM B 410 543 UNP P66937 GYRB_STAAN 410 543 DBREF 5IWM B 580 644 UNP P66937 GYRB_STAAN 580 644 DBREF 5IWM A 2 491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 5IWM D 410 543 UNP P66937 GYRB_STAAN 410 543 DBREF 5IWM D 580 644 UNP P66937 GYRB_STAAN 580 644 DBREF 5IWM C 2 491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 5IWM E 1 20 PDB 5IWM 5IWM 1 20 DBREF 5IWM F 1 20 PDB 5IWM 5IWM 1 20 SEQADV 5IWM MET B 409 UNP P66937 EXPRESSION TAG SEQADV 5IWM THR B 544 UNP P66937 LINKER SEQADV 5IWM GLY B 545 UNP P66937 LINKER SEQADV 5IWM PHE A 123 UNP Q99XG5 TYR 123 CONFLICT SEQADV 5IWM MET D 409 UNP P66937 EXPRESSION TAG SEQADV 5IWM THR D 544 UNP P66937 LINKER SEQADV 5IWM GLY D 545 UNP P66937 LINKER SEQADV 5IWM PHE C 123 UNP Q99XG5 TYR 123 CONFLICT SEQRES 1 B 202 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 B 202 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 B 202 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 B 202 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 B 202 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 B 202 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 B 202 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 B 202 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 B 202 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 B 202 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 B 202 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 B 202 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 B 202 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 B 202 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 B 202 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 B 202 VAL TYR ALA ASN LEU ASP PHE SEQRES 1 A 490 ALA GLU LEU PRO GLN SER ARG ILE ASN GLU ARG ASN ILE SEQRES 2 A 490 THR SER GLU MET ARG GLU SER PHE LEU ASP TYR ALA MET SEQRES 3 A 490 SER VAL ILE VAL ALA ARG ALA LEU PRO ASP VAL ARG ASP SEQRES 4 A 490 GLY LEU LYS PRO VAL HIS ARG ARG ILE LEU TYR GLY LEU SEQRES 5 A 490 ASN GLU GLN GLY MET THR PRO ASP LYS SER TYR LYS LYS SEQRES 6 A 490 SER ALA ARG ILE VAL GLY ASP VAL MET GLY LYS TYR HIS SEQRES 7 A 490 PRO HIS GLY ASP SER SER ILE TYR GLU ALA MET VAL ARG SEQRES 8 A 490 MET ALA GLN ASP PHE SER TYR ARG TYR PRO LEU VAL ASP SEQRES 9 A 490 GLY GLN GLY ASN PHE GLY SER MET ASP GLY ASP GLY ALA SEQRES 10 A 490 ALA ALA MET ARG PHE THR GLU ALA ARG MET THR LYS ILE SEQRES 11 A 490 THR LEU GLU LEU LEU ARG ASP ILE ASN LYS ASP THR ILE SEQRES 12 A 490 ASP PHE ILE ASP ASN TYR ASP GLY ASN GLU ARG GLU PRO SEQRES 13 A 490 SER VAL LEU PRO ALA ARG PHE PRO ASN LEU LEU ALA ASN SEQRES 14 A 490 GLY ALA SER GLY ILE ALA VAL GLY MET ALA THR ASN ILE SEQRES 15 A 490 PRO PRO HIS ASN LEU THR GLU LEU ILE ASN GLY VAL LEU SEQRES 16 A 490 SER LEU SER LYS ASN PRO ASP ILE SER ILE ALA GLU LEU SEQRES 17 A 490 MET GLU ASP ILE GLU GLY PRO ASP PHE PRO THR ALA GLY SEQRES 18 A 490 LEU ILE LEU GLY LYS SER GLY ILE ARG ARG ALA TYR GLU SEQRES 19 A 490 THR GLY ARG GLY SER ILE GLN MET ARG SER ARG ALA VAL SEQRES 20 A 490 ILE GLU GLU ARG GLY GLY GLY ARG GLN ARG ILE VAL VAL SEQRES 21 A 490 THR GLU ILE PRO PHE GLN VAL ASN LYS ALA ARG MET ILE SEQRES 22 A 490 GLU LYS ILE ALA GLU LEU VAL ARG ASP LYS LYS ILE ASP SEQRES 23 A 490 GLY ILE THR ASP LEU ARG ASP GLU THR SER LEU ARG THR SEQRES 24 A 490 GLY VAL ARG VAL VAL ILE ASP VAL ARG LYS ASP ALA ASN SEQRES 25 A 490 ALA SER VAL ILE LEU ASN ASN LEU TYR LYS GLN THR PRO SEQRES 26 A 490 LEU GLN THR SER PHE GLY VAL ASN MET ILE ALA LEU VAL SEQRES 27 A 490 ASN GLY ARG PRO LYS LEU ILE ASN LEU LYS GLU ALA LEU SEQRES 28 A 490 VAL HIS TYR LEU GLU HIS GLN LYS THR VAL VAL ARG ARG SEQRES 29 A 490 ARG THR GLN TYR ASN LEU ARG LYS ALA LYS ASP ARG ALA SEQRES 30 A 490 HIS ILE LEU GLU GLY LEU ARG ILE ALA LEU ASP HIS ILE SEQRES 31 A 490 ASP GLU ILE ILE SER THR ILE ARG GLU SER ASP THR ASP SEQRES 32 A 490 LYS VAL ALA MET GLU SER LEU GLN GLN ARG PHE LYS LEU SEQRES 33 A 490 SER GLU LYS GLN ALA GLN ALA ILE LEU ASP MET ARG LEU SEQRES 34 A 490 ARG ARG LEU THR GLY LEU GLU ARG ASP LYS ILE GLU ALA SEQRES 35 A 490 GLU TYR ASN GLU LEU LEU ASN TYR ILE SER GLU LEU GLU SEQRES 36 A 490 THR ILE LEU ALA ASP GLU GLU VAL LEU LEU GLN LEU VAL SEQRES 37 A 490 ARG ASP GLU LEU THR GLU ILE ARG ASP ARG PHE GLY ASP SEQRES 38 A 490 ASP ARG ARG THR GLU ILE GLN LEU GLY SEQRES 1 D 202 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 D 202 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 D 202 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 D 202 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 D 202 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 D 202 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 D 202 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 D 202 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 D 202 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 D 202 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 D 202 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 D 202 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 D 202 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 D 202 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 D 202 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 D 202 VAL TYR ALA ASN LEU ASP PHE SEQRES 1 C 490 ALA GLU LEU PRO GLN SER ARG ILE ASN GLU ARG ASN ILE SEQRES 2 C 490 THR SER GLU MET ARG GLU SER PHE LEU ASP TYR ALA MET SEQRES 3 C 490 SER VAL ILE VAL ALA ARG ALA LEU PRO ASP VAL ARG ASP SEQRES 4 C 490 GLY LEU LYS PRO VAL HIS ARG ARG ILE LEU TYR GLY LEU SEQRES 5 C 490 ASN GLU GLN GLY MET THR PRO ASP LYS SER TYR LYS LYS SEQRES 6 C 490 SER ALA ARG ILE VAL GLY ASP VAL MET GLY LYS TYR HIS SEQRES 7 C 490 PRO HIS GLY ASP SER SER ILE TYR GLU ALA MET VAL ARG SEQRES 8 C 490 MET ALA GLN ASP PHE SER TYR ARG TYR PRO LEU VAL ASP SEQRES 9 C 490 GLY GLN GLY ASN PHE GLY SER MET ASP GLY ASP GLY ALA SEQRES 10 C 490 ALA ALA MET ARG PHE THR GLU ALA ARG MET THR LYS ILE SEQRES 11 C 490 THR LEU GLU LEU LEU ARG ASP ILE ASN LYS ASP THR ILE SEQRES 12 C 490 ASP PHE ILE ASP ASN TYR ASP GLY ASN GLU ARG GLU PRO SEQRES 13 C 490 SER VAL LEU PRO ALA ARG PHE PRO ASN LEU LEU ALA ASN SEQRES 14 C 490 GLY ALA SER GLY ILE ALA VAL GLY MET ALA THR ASN ILE SEQRES 15 C 490 PRO PRO HIS ASN LEU THR GLU LEU ILE ASN GLY VAL LEU SEQRES 16 C 490 SER LEU SER LYS ASN PRO ASP ILE SER ILE ALA GLU LEU SEQRES 17 C 490 MET GLU ASP ILE GLU GLY PRO ASP PHE PRO THR ALA GLY SEQRES 18 C 490 LEU ILE LEU GLY LYS SER GLY ILE ARG ARG ALA TYR GLU SEQRES 19 C 490 THR GLY ARG GLY SER ILE GLN MET ARG SER ARG ALA VAL SEQRES 20 C 490 ILE GLU GLU ARG GLY GLY GLY ARG GLN ARG ILE VAL VAL SEQRES 21 C 490 THR GLU ILE PRO PHE GLN VAL ASN LYS ALA ARG MET ILE SEQRES 22 C 490 GLU LYS ILE ALA GLU LEU VAL ARG ASP LYS LYS ILE ASP SEQRES 23 C 490 GLY ILE THR ASP LEU ARG ASP GLU THR SER LEU ARG THR SEQRES 24 C 490 GLY VAL ARG VAL VAL ILE ASP VAL ARG LYS ASP ALA ASN SEQRES 25 C 490 ALA SER VAL ILE LEU ASN ASN LEU TYR LYS GLN THR PRO SEQRES 26 C 490 LEU GLN THR SER PHE GLY VAL ASN MET ILE ALA LEU VAL SEQRES 27 C 490 ASN GLY ARG PRO LYS LEU ILE ASN LEU LYS GLU ALA LEU SEQRES 28 C 490 VAL HIS TYR LEU GLU HIS GLN LYS THR VAL VAL ARG ARG SEQRES 29 C 490 ARG THR GLN TYR ASN LEU ARG LYS ALA LYS ASP ARG ALA SEQRES 30 C 490 HIS ILE LEU GLU GLY LEU ARG ILE ALA LEU ASP HIS ILE SEQRES 31 C 490 ASP GLU ILE ILE SER THR ILE ARG GLU SER ASP THR ASP SEQRES 32 C 490 LYS VAL ALA MET GLU SER LEU GLN GLN ARG PHE LYS LEU SEQRES 33 C 490 SER GLU LYS GLN ALA GLN ALA ILE LEU ASP MET ARG LEU SEQRES 34 C 490 ARG ARG LEU THR GLY LEU GLU ARG ASP LYS ILE GLU ALA SEQRES 35 C 490 GLU TYR ASN GLU LEU LEU ASN TYR ILE SER GLU LEU GLU SEQRES 36 C 490 THR ILE LEU ALA ASP GLU GLU VAL LEU LEU GLN LEU VAL SEQRES 37 C 490 ARG ASP GLU LEU THR GLU ILE ARG ASP ARG PHE GLY ASP SEQRES 38 C 490 ASP ARG ARG THR GLU ILE GLN LEU GLY SEQRES 1 E 20 DA DG DC DC DG DT DA DG DG DT DT DC DA SEQRES 2 E 20 DC DC DG DC DA DC DA SEQRES 1 F 20 DT DG DT DG DC DG DG DT DG DA DA DC DC SEQRES 2 F 20 DT DA DC DG DG DC DT HET MN B 701 1 HET MN D1001 1 HET GOL C 501 6 HET 6EJ F 101 66 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM 6EJ (1R)-1-[(4-{[(6,7-DIHYDRO[1,4]DIOXINO[2,3-C]PYRIDAZIN- HETNAM 2 6EJ 3-YL)METHYL]AMINO}PIPERIDIN-1-YL)METHYL]-9-FLUORO-1,2- HETNAM 3 6EJ DIHYDRO-4H-PYRROLO[3,2,1-IJ]QUINOLIN-4-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 MN 2(MN 2+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 6EJ C24 H26 F N5 O3 FORMUL 11 HOH *258(H2 O) HELIX 1 AA1 GLY B 436 ARG B 447 1 12 HELIX 2 AA2 ARG B 468 ASN B 474 1 7 HELIX 3 AA3 ASN B 475 GLY B 486 1 12 HELIX 4 AA4 ILE B 489 PHE B 493 5 5 HELIX 5 AA5 ASP B 494 ALA B 498 5 5 HELIX 6 AA6 ASP B 510 MET B 528 1 19 HELIX 7 AA7 MET B 528 ALA B 534 1 7 HELIX 8 AA8 GLY B 582 MET B 586 5 5 HELIX 9 AA9 ASN B 587 MET B 596 1 10 HELIX 10 AB1 ASP B 610 GLY B 623 1 14 HELIX 11 AB2 VAL B 625 ALA B 637 1 13 HELIX 12 AB3 ILE A 14 ALA A 32 1 19 HELIX 13 AB4 LYS A 43 GLN A 56 1 14 HELIX 14 AB5 SER A 67 TYR A 78 1 12 HELIX 15 AB6 GLY A 82 ALA A 94 1 13 HELIX 16 AB7 THR A 132 ARG A 137 1 6 HELIX 17 AB8 PRO A 165 GLY A 171 1 7 HELIX 18 AB9 ASN A 187 LYS A 200 1 14 HELIX 19 AC1 SER A 205 MET A 210 1 6 HELIX 20 AC2 LYS A 227 GLY A 237 1 11 HELIX 21 AC3 ASN A 269 ASP A 283 1 15 HELIX 22 AC4 ASN A 313 THR A 325 1 13 HELIX 23 AC5 ASN A 347 HIS A 390 1 44 HELIX 24 AC6 HIS A 390 GLU A 400 1 11 HELIX 25 AC7 THR A 403 PHE A 415 1 13 HELIX 26 AC8 SER A 418 ASP A 427 1 10 HELIX 27 AC9 ARG A 429 THR A 434 5 6 HELIX 28 AD1 LEU A 436 ALA A 460 1 25 HELIX 29 AD2 ASP A 461 GLY A 481 1 21 HELIX 30 AD3 GLY D 436 ARG D 447 1 12 HELIX 31 AD4 ARG D 468 ASN D 475 1 8 HELIX 32 AD5 ASN D 475 GLY D 486 1 12 HELIX 33 AD6 ILE D 489 PHE D 493 5 5 HELIX 34 AD7 ASP D 494 ALA D 498 5 5 HELIX 35 AD8 ASP D 510 MET D 528 1 19 HELIX 36 AD9 MET D 528 ALA D 534 1 7 HELIX 37 AE1 GLY D 582 MET D 586 5 5 HELIX 38 AE2 ASN D 587 MET D 596 1 10 HELIX 39 AE3 ASP D 610 GLY D 623 1 14 HELIX 40 AE4 VAL D 625 ALA D 637 1 13 HELIX 41 AE5 ILE C 14 ALA C 32 1 19 HELIX 42 AE6 LYS C 43 GLN C 56 1 14 HELIX 43 AE7 SER C 67 TYR C 78 1 12 HELIX 44 AE8 GLY C 82 MET C 93 1 12 HELIX 45 AE9 ILE C 131 ARG C 137 1 7 HELIX 46 AF1 PRO C 165 GLY C 171 1 7 HELIX 47 AF2 ASN C 187 ASN C 201 1 15 HELIX 48 AF3 SER C 205 MET C 210 1 6 HELIX 49 AF4 LYS C 227 GLY C 237 1 11 HELIX 50 AF5 ASN C 269 ASP C 283 1 15 HELIX 51 AF6 ASN C 313 THR C 325 1 13 HELIX 52 AF7 ASN C 347 HIS C 390 1 44 HELIX 53 AF8 HIS C 390 GLU C 400 1 11 HELIX 54 AF9 THR C 403 LYS C 416 1 14 HELIX 55 AG1 SER C 418 MET C 428 1 11 HELIX 56 AG2 ARG C 429 LEU C 433 5 5 HELIX 57 AG3 THR C 434 ALA C 460 1 27 HELIX 58 AG4 ASP C 461 GLY C 481 1 21 SHEET 1 AA1 6 GLN B 452 PRO B 456 0 SHEET 2 AA1 6 GLU B 430 VAL B 434 1 N GLU B 430 O ALA B 453 SHEET 3 AA1 6 LYS B 502 ILE B 505 1 O VAL B 504 N ILE B 431 SHEET 4 AA1 6 VAL B 537 ILE B 539 1 O TYR B 538 N ILE B 503 SHEET 5 AA1 6 LEU B 604 LYS B 607 -1 O VAL B 606 N VAL B 537 SHEET 6 AA1 6 GLU A 11 ASN A 13 1 O ARG A 12 N LYS B 607 SHEET 1 AA2 3 LYS A 65 LYS A 66 0 SHEET 2 AA2 3 GLU A 125 MET A 128 -1 O ALA A 126 N LYS A 65 SHEET 3 AA2 3 VAL A 104 GLN A 107 -1 N ASP A 105 O ARG A 127 SHEET 1 AA3 2 PHE A 146 ASP A 148 0 SHEET 2 AA3 2 ARG A 155 PRO A 157 -1 O GLU A 156 N ILE A 147 SHEET 1 AA4 2 ALA A 172 ILE A 175 0 SHEET 2 AA4 2 ALA A 180 ILE A 183 -1 O ILE A 183 N ALA A 172 SHEET 1 AA5 4 GLN A 328 ASN A 334 0 SHEET 2 AA5 4 ARG A 238 ARG A 244 -1 N ILE A 241 O PHE A 331 SHEET 3 AA5 4 LEU A 223 LEU A 225 -1 N LEU A 223 O ARG A 244 SHEET 4 AA5 4 GLU A 487 GLN A 489 1 O GLN A 489 N ILE A 224 SHEET 1 AA6 4 ARG A 246 GLY A 253 0 SHEET 2 AA6 4 ARG A 256 GLU A 263 -1 O ARG A 256 N ARG A 252 SHEET 3 AA6 4 VAL A 304 VAL A 308 -1 O VAL A 304 N VAL A 261 SHEET 4 AA6 4 ILE A 289 ASP A 294 -1 N THR A 290 O ASP A 307 SHEET 1 AA7 2 ILE A 336 VAL A 339 0 SHEET 2 AA7 2 ARG A 342 LEU A 345 -1 O ARG A 342 N VAL A 339 SHEET 1 AA8 6 GLN D 452 PRO D 456 0 SHEET 2 AA8 6 GLU D 430 VAL D 434 1 N GLU D 430 O ALA D 453 SHEET 3 AA8 6 LYS D 502 ILE D 505 1 O VAL D 504 N LEU D 433 SHEET 4 AA8 6 VAL D 537 ILE D 539 1 O TYR D 538 N ILE D 503 SHEET 5 AA8 6 LEU D 604 LYS D 607 -1 O LEU D 604 N ILE D 539 SHEET 6 AA8 6 GLU C 11 ASN C 13 1 O ARG C 12 N GLN D 605 SHEET 1 AA9 3 LYS C 65 LYS C 66 0 SHEET 2 AA9 3 GLU C 125 MET C 128 -1 O ALA C 126 N LYS C 65 SHEET 3 AA9 3 VAL C 104 GLN C 107 -1 N GLN C 107 O GLU C 125 SHEET 1 AB1 2 PHE C 146 ASP C 148 0 SHEET 2 AB1 2 ARG C 155 PRO C 157 -1 O GLU C 156 N ILE C 147 SHEET 1 AB2 2 ALA C 172 ILE C 175 0 SHEET 2 AB2 2 ALA C 180 ILE C 183 -1 O ILE C 183 N ALA C 172 SHEET 1 AB3 4 GLN C 328 ASN C 334 0 SHEET 2 AB3 4 ARG C 238 ARG C 244 -1 N ILE C 241 O PHE C 331 SHEET 3 AB3 4 LEU C 223 LEU C 225 -1 N LEU C 223 O ARG C 244 SHEET 4 AB3 4 GLU C 487 GLN C 489 1 O GLU C 487 N ILE C 224 SHEET 1 AB4 4 ARG C 246 GLU C 251 0 SHEET 2 AB4 4 GLN C 257 GLU C 263 -1 O VAL C 260 N VAL C 248 SHEET 3 AB4 4 VAL C 304 VAL C 308 -1 O VAL C 304 N VAL C 261 SHEET 4 AB4 4 ILE C 289 ASP C 294 -1 N ARG C 293 O VAL C 305 SHEET 1 AB5 2 ILE C 336 VAL C 339 0 SHEET 2 AB5 2 ARG C 342 LEU C 345 -1 O ARG C 342 N VAL C 339 LINK OE2 GLU B 435 MN MN B 701 1555 1555 1.93 LINK OD2 ASP B 508 MN MN B 701 1555 1555 2.10 LINK MN MN B 701 O HOH B 803 1555 1555 2.05 LINK MN MN B 701 O HOH B 814 1555 1555 2.53 LINK MN MN B 701 O3'A DG E 8 1555 1555 2.69 LINK MN MN B 701 OP1A DG E 9 1555 1555 2.28 LINK MN MN B 701 OP1B DG F 9 1555 1555 2.30 LINK OE2 GLU D 435 MN MN D1001 1555 1555 1.91 LINK OD2 ASP D 508 MN MN D1001 1555 1555 1.99 LINK MN MN D1001 O HOH D1106 1555 1555 2.37 LINK MN MN D1001 O HOH D1121 1555 1555 1.94 LINK MN MN D1001 O3'B DG E 8 1555 1555 2.51 LINK MN MN D1001 OP1B DG E 9 1555 1555 2.48 LINK MN MN D1001 O3'A DT F 8 1555 1555 2.45 LINK MN MN D1001 OP1A DG F 9 1555 1555 2.27 CISPEP 1 LEU A 490 GLY A 491 0 0.38 CISPEP 2 GLY C 253 GLY C 254 0 -3.39 SITE 1 AC1 8 GLU B 435 ASP B 508 HOH B 803 HOH B 814 SITE 2 AC1 8 DG E 8 DG E 9 DT F 8 DG F 9 SITE 1 AC2 8 GLU D 435 ASP D 508 HOH D1106 HOH D1121 SITE 2 AC2 8 DG E 8 DG E 9 DT F 8 DG F 9 SITE 1 AC3 5 PRO C 44 ARG C 47 ARG C 48 GLU C 156 SITE 2 AC3 5 HOH C 647 SITE 1 AC4 14 ALA A 68 MET A 75 ASP A 83 MET A 121 SITE 2 AC4 14 ALA C 68 MET C 75 ASP C 83 MET C 121 SITE 3 AC4 14 DT E 10 DT E 11 DA F 10 DA F 11 SITE 4 AC4 14 HOH F 212 HOH F 219 CRYST1 93.785 93.785 413.350 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010663 0.006156 0.000000 0.00000 SCALE2 0.000000 0.012312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002419 0.00000