PDB Short entry for 5J28 HEADER HYDROLASE/PROTEIN BINDING 29-MAR-16 5J28 TITLE KI67-PP1G (PROTEIN PHOSPHATASE 1, GAMMA ISOFORM) HOLOENZYME COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-GAMMA CATALYTIC COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 7-308; COMPND 6 SYNONYM: PP-1G,PROTEIN PHOSPHATASE 1C CATALYTIC SUBUNIT; COMPND 7 EC: 3.1.3.16; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ANTIGEN KI-67; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 496-536; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP1CC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: RP1B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: MKI67; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-M30 MBP KEYWDS PP1 GAMMA; REPOMAN, KI-67; PHOSPHATASE, HYDROLASE-PROTEIN BINDING KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.S.KUMAR,W.PETI,R.PAGE REVDAT 5 27-SEP-23 5J28 1 REMARK REVDAT 4 18-DEC-19 5J28 1 REMARK REVDAT 3 27-SEP-17 5J28 1 REMARK REVDAT 2 12-OCT-16 5J28 1 JRNL REVDAT 1 05-OCT-16 5J28 0 JRNL AUTH G.S.KUMAR,E.GOKHAN,S.DE MUNTER,M.BOLLEN,P.VAGNARELLI,W.PETI, JRNL AUTH 2 R.PAGE JRNL TITL THE KI-67 AND REPOMAN MITOTIC PHOSPHATASES ASSEMBLE VIA AN JRNL TITL 2 IDENTICAL, YET NOVEL MECHANISM. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27572260 JRNL DOI 10.7554/ELIFE.16539 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6454 - 4.8179 0.97 4534 145 0.1386 0.2018 REMARK 3 2 4.8179 - 3.8252 0.97 4504 143 0.1209 0.1199 REMARK 3 3 3.8252 - 3.3420 0.97 4505 138 0.1449 0.1839 REMARK 3 4 3.3420 - 3.0366 0.97 4490 142 0.1631 0.2185 REMARK 3 5 3.0366 - 2.8190 0.97 4490 142 0.1568 0.1957 REMARK 3 6 2.8190 - 2.6528 0.97 4495 145 0.1706 0.2157 REMARK 3 7 2.6528 - 2.5200 0.97 4481 146 0.1733 0.2256 REMARK 3 8 2.5200 - 2.4103 0.97 4510 144 0.1725 0.1832 REMARK 3 9 2.4103 - 2.3175 0.97 4464 143 0.1819 0.2461 REMARK 3 10 2.3175 - 2.2376 0.97 4479 141 0.1990 0.2412 REMARK 3 11 2.2376 - 2.1676 0.97 4465 144 0.1987 0.2332 REMARK 3 12 2.1676 - 2.1057 0.97 4501 142 0.2013 0.2312 REMARK 3 13 2.1057 - 2.0502 0.97 4500 141 0.2077 0.2533 REMARK 3 14 2.0502 - 2.0002 0.97 4470 142 0.2159 0.2797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5283 REMARK 3 ANGLE : 0.861 7156 REMARK 3 CHIRALITY : 0.047 770 REMARK 3 PLANARITY : 0.005 946 REMARK 3 DIHEDRAL : 11.732 3160 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL, NON FIXED EXIT SLIT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 3, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS NOV 3, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.331 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.08610 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5INB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M SODIUM MALONATE PH 4.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.90567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.81133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.35850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 172.26417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.45283 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 HIS A 5 REMARK 465 MET A 6 REMARK 465 GLU A 300 REMARK 465 LYS A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 PRO A 304 REMARK 465 ASN A 305 REMARK 465 ALA A 306 REMARK 465 THR A 307 REMARK 465 ARG A 308 REMARK 465 GLY B 4 REMARK 465 HIS B 5 REMARK 465 MET B 6 REMARK 465 GLU B 300 REMARK 465 LYS B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 PRO B 304 REMARK 465 ASN B 305 REMARK 465 ALA B 306 REMARK 465 THR B 307 REMARK 465 ARG B 308 REMARK 465 GLY C 491 REMARK 465 ALA C 492 REMARK 465 MET C 493 REMARK 465 GLY C 494 REMARK 465 TYR C 495 REMARK 465 SER C 496 REMARK 465 GLU C 497 REMARK 465 GLY C 498 REMARK 465 ILE C 499 REMARK 465 PRO C 500 REMARK 465 LEU C 501 REMARK 465 LYS C 502 REMARK 465 ARG C 536 REMARK 465 GLY D 491 REMARK 465 ALA D 492 REMARK 465 MET D 493 REMARK 465 GLY D 494 REMARK 465 TYR D 495 REMARK 465 SER D 496 REMARK 465 GLU D 497 REMARK 465 GLY D 498 REMARK 465 ILE D 499 REMARK 465 PRO D 500 REMARK 465 LEU D 501 REMARK 465 LYS D 502 REMARK 465 ARG D 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 31 CD OE1 NE2 REMARK 470 LEU A 40 CD1 CD2 REMARK 470 GLU A 56 CD OE1 OE2 REMARK 470 LYS A 98 CD CE NZ REMARK 470 LYS A 147 CD CE NZ REMARK 470 LYS A 211 CD CE NZ REMARK 470 LYS A 260 CE NZ REMARK 470 LYS B 23 CD CE NZ REMARK 470 GLN B 29 CG CD OE1 NE2 REMARK 470 GLN B 31 CG CD OE1 NE2 REMARK 470 LYS B 41 CD CE NZ REMARK 470 GLU B 56 CD OE1 OE2 REMARK 470 LYS B 98 CD CE NZ REMARK 470 ILE B 133 CD1 REMARK 470 LYS B 147 CD CE NZ REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 LYS B 211 CD CE NZ REMARK 470 LYS B 260 CE NZ REMARK 470 ARG C 503 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 504 CG CD NE CZ NH1 NH2 REMARK 470 MET C 525 CG SD CE REMARK 470 LYS C 528 CG CD CE NZ REMARK 470 THR C 534 OG1 CG2 REMARK 470 LYS C 535 CG CD CE NZ REMARK 470 ARG D 503 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 504 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 505 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 511 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 516 CG CD1 CD2 REMARK 470 ASP D 518 CG OD1 OD2 REMARK 470 ASN D 520 CG OD1 ND2 REMARK 470 LEU D 521 CG CD1 CD2 REMARK 470 LYS D 528 CG CD CE NZ REMARK 470 ARG D 529 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 535 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 506 O HOH A 510 1.99 REMARK 500 O HOH A 556 O HOH A 590 2.01 REMARK 500 O HOH A 508 O HOH C 612 2.11 REMARK 500 O HOH A 581 O HOH A 584 2.14 REMARK 500 O HOH A 532 O HOH A 595 2.15 REMARK 500 O HOH B 585 O HOH B 591 2.18 REMARK 500 O HOH A 536 O HOH A 578 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 576 O HOH B 579 5554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 273 CB CYS A 273 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 70.09 60.65 REMARK 500 ASP A 95 147.91 78.56 REMARK 500 ARG A 96 -48.17 82.36 REMARK 500 TYR A 144 -104.87 -134.22 REMARK 500 SER A 224 -149.95 68.62 REMARK 500 ALA A 247 -124.65 -128.33 REMARK 500 HIS A 248 -12.19 78.39 REMARK 500 CYS A 273 16.06 56.22 REMARK 500 ASP A 277 70.00 -111.50 REMARK 500 ASP B 95 150.23 71.84 REMARK 500 ARG B 96 -47.59 76.52 REMARK 500 TYR B 144 -104.45 -132.19 REMARK 500 ARG B 221 -9.99 -59.42 REMARK 500 SER B 224 -146.98 62.18 REMARK 500 ALA B 247 -125.72 -126.24 REMARK 500 HIS B 248 -14.16 80.02 REMARK 500 ASN B 271 59.53 39.82 REMARK 500 ASP B 277 52.30 -99.97 REMARK 500 ARG C 504 80.40 50.88 REMARK 500 MET C 525 78.14 -118.09 REMARK 500 ASN D 524 32.59 -83.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 GLU A 167 OE1 94.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5INB RELATED DB: PDB REMARK 900 PP1 GAMMA IN COMPLEX WITH REPOMAN REMARK 900 RELATED ID: 5IOH RELATED DB: PDB REMARK 900 PP1 ALPHA IN COMPLEX WITH REPOMAN REMARK 900 RELATED ID: 25981 RELATED DB: BMRB REMARK 900 ASSIGNMENTS OF REPOMAN PP1 BINDING DOMAIN DBREF 5J28 A 7 308 UNP P36873 PP1G_HUMAN 7 308 DBREF 5J28 B 7 308 UNP P36873 PP1G_HUMAN 7 308 DBREF 5J28 C 496 536 UNP P46013 KI67_HUMAN 496 536 DBREF 5J28 D 496 536 UNP P46013 KI67_HUMAN 496 536 SEQADV 5J28 GLY A 4 UNP P36873 EXPRESSION TAG SEQADV 5J28 HIS A 5 UNP P36873 EXPRESSION TAG SEQADV 5J28 MET A 6 UNP P36873 EXPRESSION TAG SEQADV 5J28 GLY B 4 UNP P36873 EXPRESSION TAG SEQADV 5J28 HIS B 5 UNP P36873 EXPRESSION TAG SEQADV 5J28 MET B 6 UNP P36873 EXPRESSION TAG SEQADV 5J28 GLY C 491 UNP P46013 EXPRESSION TAG SEQADV 5J28 ALA C 492 UNP P46013 EXPRESSION TAG SEQADV 5J28 MET C 493 UNP P46013 EXPRESSION TAG SEQADV 5J28 GLY C 494 UNP P46013 EXPRESSION TAG SEQADV 5J28 TYR C 495 UNP P46013 EXPRESSION TAG SEQADV 5J28 MET C 525 UNP P46013 THR 525 ENGINEERED MUTATION SEQADV 5J28 GLY D 491 UNP P46013 EXPRESSION TAG SEQADV 5J28 ALA D 492 UNP P46013 EXPRESSION TAG SEQADV 5J28 MET D 493 UNP P46013 EXPRESSION TAG SEQADV 5J28 GLY D 494 UNP P46013 EXPRESSION TAG SEQADV 5J28 TYR D 495 UNP P46013 EXPRESSION TAG SEQADV 5J28 MET D 525 UNP P46013 THR 525 ENGINEERED MUTATION SEQRES 1 A 305 GLY HIS MET LEU ASN ILE ASP SER ILE ILE GLN ARG LEU SEQRES 2 A 305 LEU GLU VAL ARG GLY SER LYS PRO GLY LYS ASN VAL GLN SEQRES 3 A 305 LEU GLN GLU ASN GLU ILE ARG GLY LEU CYS LEU LYS SER SEQRES 4 A 305 ARG GLU ILE PHE LEU SER GLN PRO ILE LEU LEU GLU LEU SEQRES 5 A 305 GLU ALA PRO LEU LYS ILE CYS GLY ASP ILE HIS GLY GLN SEQRES 6 A 305 TYR TYR ASP LEU LEU ARG LEU PHE GLU TYR GLY GLY PHE SEQRES 7 A 305 PRO PRO GLU SER ASN TYR LEU PHE LEU GLY ASP TYR VAL SEQRES 8 A 305 ASP ARG GLY LYS GLN SER LEU GLU THR ILE CYS LEU LEU SEQRES 9 A 305 LEU ALA TYR LYS ILE LYS TYR PRO GLU ASN PHE PHE LEU SEQRES 10 A 305 LEU ARG GLY ASN HIS GLU CYS ALA SER ILE ASN ARG ILE SEQRES 11 A 305 TYR GLY PHE TYR ASP GLU CYS LYS ARG ARG TYR ASN ILE SEQRES 12 A 305 LYS LEU TRP LYS THR PHE THR ASP CYS PHE ASN CYS LEU SEQRES 13 A 305 PRO ILE ALA ALA ILE VAL ASP GLU LYS ILE PHE CYS CYS SEQRES 14 A 305 HIS GLY GLY LEU SER PRO ASP LEU GLN SER MET GLU GLN SEQRES 15 A 305 ILE ARG ARG ILE MET ARG PRO THR ASP VAL PRO ASP GLN SEQRES 16 A 305 GLY LEU LEU CYS ASP LEU LEU TRP SER ASP PRO ASP LYS SEQRES 17 A 305 ASP VAL LEU GLY TRP GLY GLU ASN ASP ARG GLY VAL SER SEQRES 18 A 305 PHE THR PHE GLY ALA GLU VAL VAL ALA LYS PHE LEU HIS SEQRES 19 A 305 LYS HIS ASP LEU ASP LEU ILE CYS ARG ALA HIS GLN VAL SEQRES 20 A 305 VAL GLU ASP GLY TYR GLU PHE PHE ALA LYS ARG GLN LEU SEQRES 21 A 305 VAL THR LEU PHE SER ALA PRO ASN TYR CYS GLY GLU PHE SEQRES 22 A 305 ASP ASN ALA GLY ALA MET MET SER VAL ASP GLU THR LEU SEQRES 23 A 305 MET CYS SER PHE GLN ILE LEU LYS PRO ALA GLU LYS LYS SEQRES 24 A 305 LYS PRO ASN ALA THR ARG SEQRES 1 B 305 GLY HIS MET LEU ASN ILE ASP SER ILE ILE GLN ARG LEU SEQRES 2 B 305 LEU GLU VAL ARG GLY SER LYS PRO GLY LYS ASN VAL GLN SEQRES 3 B 305 LEU GLN GLU ASN GLU ILE ARG GLY LEU CYS LEU LYS SER SEQRES 4 B 305 ARG GLU ILE PHE LEU SER GLN PRO ILE LEU LEU GLU LEU SEQRES 5 B 305 GLU ALA PRO LEU LYS ILE CYS GLY ASP ILE HIS GLY GLN SEQRES 6 B 305 TYR TYR ASP LEU LEU ARG LEU PHE GLU TYR GLY GLY PHE SEQRES 7 B 305 PRO PRO GLU SER ASN TYR LEU PHE LEU GLY ASP TYR VAL SEQRES 8 B 305 ASP ARG GLY LYS GLN SER LEU GLU THR ILE CYS LEU LEU SEQRES 9 B 305 LEU ALA TYR LYS ILE LYS TYR PRO GLU ASN PHE PHE LEU SEQRES 10 B 305 LEU ARG GLY ASN HIS GLU CYS ALA SER ILE ASN ARG ILE SEQRES 11 B 305 TYR GLY PHE TYR ASP GLU CYS LYS ARG ARG TYR ASN ILE SEQRES 12 B 305 LYS LEU TRP LYS THR PHE THR ASP CYS PHE ASN CYS LEU SEQRES 13 B 305 PRO ILE ALA ALA ILE VAL ASP GLU LYS ILE PHE CYS CYS SEQRES 14 B 305 HIS GLY GLY LEU SER PRO ASP LEU GLN SER MET GLU GLN SEQRES 15 B 305 ILE ARG ARG ILE MET ARG PRO THR ASP VAL PRO ASP GLN SEQRES 16 B 305 GLY LEU LEU CYS ASP LEU LEU TRP SER ASP PRO ASP LYS SEQRES 17 B 305 ASP VAL LEU GLY TRP GLY GLU ASN ASP ARG GLY VAL SER SEQRES 18 B 305 PHE THR PHE GLY ALA GLU VAL VAL ALA LYS PHE LEU HIS SEQRES 19 B 305 LYS HIS ASP LEU ASP LEU ILE CYS ARG ALA HIS GLN VAL SEQRES 20 B 305 VAL GLU ASP GLY TYR GLU PHE PHE ALA LYS ARG GLN LEU SEQRES 21 B 305 VAL THR LEU PHE SER ALA PRO ASN TYR CYS GLY GLU PHE SEQRES 22 B 305 ASP ASN ALA GLY ALA MET MET SER VAL ASP GLU THR LEU SEQRES 23 B 305 MET CYS SER PHE GLN ILE LEU LYS PRO ALA GLU LYS LYS SEQRES 24 B 305 LYS PRO ASN ALA THR ARG SEQRES 1 C 46 GLY ALA MET GLY TYR SER GLU GLY ILE PRO LEU LYS ARG SEQRES 2 C 46 ARG ARG VAL SER PHE GLY GLY HIS LEU ARG PRO GLU LEU SEQRES 3 C 46 PHE ASP GLU ASN LEU PRO PRO ASN MET PRO LEU LYS ARG SEQRES 4 C 46 GLY GLU ALA PRO THR LYS ARG SEQRES 1 D 46 GLY ALA MET GLY TYR SER GLU GLY ILE PRO LEU LYS ARG SEQRES 2 D 46 ARG ARG VAL SER PHE GLY GLY HIS LEU ARG PRO GLU LEU SEQRES 3 D 46 PHE ASP GLU ASN LEU PRO PRO ASN MET PRO LEU LYS ARG SEQRES 4 D 46 GLY GLU ALA PRO THR LYS ARG HET MLI A 401 7 HET NA A 402 1 HET MLI B 401 7 HETNAM MLI MALONATE ION HETNAM NA SODIUM ION FORMUL 5 MLI 2(C3 H2 O4 2-) FORMUL 6 NA NA 1+ FORMUL 8 HOH *232(H2 O) HELIX 1 AA1 ASN A 8 LEU A 17 1 10 HELIX 2 AA2 GLU A 18 SER A 22 5 5 HELIX 3 AA3 GLN A 31 GLN A 49 1 19 HELIX 4 AA4 GLN A 68 GLY A 80 1 13 HELIX 5 AA5 GLN A 99 TYR A 114 1 16 HELIX 6 AA6 CYS A 127 ARG A 132 1 6 HELIX 7 AA7 GLY A 135 TYR A 144 1 10 HELIX 8 AA8 ASN A 145 ASN A 157 1 13 HELIX 9 AA9 MET A 183 ARG A 188 1 6 HELIX 10 AB1 GLY A 199 SER A 207 1 9 HELIX 11 AB2 GLY A 228 ASP A 240 1 13 HELIX 12 AB3 ASN A 271 GLU A 275 5 5 HELIX 13 AB4 ASN B 8 LEU B 17 1 10 HELIX 14 AB5 GLU B 18 SER B 22 5 5 HELIX 15 AB6 GLN B 31 GLN B 49 1 19 HELIX 16 AB7 GLN B 68 GLY B 80 1 13 HELIX 17 AB8 GLN B 99 TYR B 114 1 16 HELIX 18 AB9 CYS B 127 ARG B 132 1 6 HELIX 19 AC1 GLY B 135 TYR B 144 1 10 HELIX 20 AC2 ASN B 145 ASN B 157 1 13 HELIX 21 AC3 MET B 183 ARG B 188 1 6 HELIX 22 AC4 GLY B 199 SER B 207 1 9 HELIX 23 AC5 GLY B 228 ASP B 240 1 13 HELIX 24 AC6 ASN B 271 GLU B 275 5 5 SHEET 1 AA1 6 LEU A 52 LEU A 55 0 SHEET 2 AA1 6 ALA A 162 VAL A 165 1 O ILE A 164 N LEU A 53 SHEET 3 AA1 6 ILE A 169 CYS A 172 -1 O CYS A 171 N ALA A 163 SHEET 4 AA1 6 LEU A 243 ARG A 246 1 O CYS A 245 N PHE A 170 SHEET 5 AA1 6 LEU A 263 LEU A 266 1 O LEU A 266 N ARG A 246 SHEET 6 AA1 6 TYR A 255 PHE A 258 -1 N GLU A 256 O THR A 265 SHEET 1 AA2 6 PHE A 118 LEU A 120 0 SHEET 2 AA2 6 TYR A 87 PHE A 89 1 N PHE A 89 O PHE A 119 SHEET 3 AA2 6 LEU A 59 CYS A 62 1 N CYS A 62 O LEU A 88 SHEET 4 AA2 6 GLY A 280 VAL A 285 -1 O VAL A 285 N LEU A 59 SHEET 5 AA2 6 MET A 290 PRO A 298 -1 O LEU A 296 N GLY A 280 SHEET 6 AA2 6 SER C 507 PHE C 508 1 O SER C 507 N CYS A 291 SHEET 1 AA3 6 PHE A 118 LEU A 120 0 SHEET 2 AA3 6 TYR A 87 PHE A 89 1 N PHE A 89 O PHE A 119 SHEET 3 AA3 6 LEU A 59 CYS A 62 1 N CYS A 62 O LEU A 88 SHEET 4 AA3 6 GLY A 280 VAL A 285 -1 O VAL A 285 N LEU A 59 SHEET 5 AA3 6 MET A 290 PRO A 298 -1 O LEU A 296 N GLY A 280 SHEET 6 AA3 6 GLU C 515 PHE C 517 1 O GLU C 515 N ILE A 295 SHEET 1 AA4 3 ASP A 208 PRO A 209 0 SHEET 2 AA4 3 PHE A 225 PHE A 227 1 O PHE A 227 N ASP A 208 SHEET 3 AA4 3 TRP A 216 GLU A 218 -1 N GLY A 217 O THR A 226 SHEET 1 AA5 6 LEU B 52 LEU B 55 0 SHEET 2 AA5 6 ALA B 162 VAL B 165 1 O ILE B 164 N LEU B 55 SHEET 3 AA5 6 ILE B 169 CYS B 172 -1 O CYS B 171 N ALA B 163 SHEET 4 AA5 6 LEU B 243 ARG B 246 1 O CYS B 245 N PHE B 170 SHEET 5 AA5 6 LEU B 263 LEU B 266 1 O LEU B 266 N ARG B 246 SHEET 6 AA5 6 TYR B 255 PHE B 258 -1 N PHE B 258 O LEU B 263 SHEET 1 AA6 6 PHE B 118 LEU B 120 0 SHEET 2 AA6 6 TYR B 87 PHE B 89 1 N PHE B 89 O PHE B 119 SHEET 3 AA6 6 LEU B 59 CYS B 62 1 N LYS B 60 O LEU B 88 SHEET 4 AA6 6 GLY B 280 VAL B 285 -1 O VAL B 285 N LEU B 59 SHEET 5 AA6 6 MET B 290 PRO B 298 -1 O LEU B 296 N GLY B 280 SHEET 6 AA6 6 SER D 507 PHE D 508 1 O SER D 507 N CYS B 291 SHEET 1 AA7 6 PHE B 118 LEU B 120 0 SHEET 2 AA7 6 TYR B 87 PHE B 89 1 N PHE B 89 O PHE B 119 SHEET 3 AA7 6 LEU B 59 CYS B 62 1 N LYS B 60 O LEU B 88 SHEET 4 AA7 6 GLY B 280 VAL B 285 -1 O VAL B 285 N LEU B 59 SHEET 5 AA7 6 MET B 290 PRO B 298 -1 O LEU B 296 N GLY B 280 SHEET 6 AA7 6 GLU D 515 PHE D 517 1 O GLU D 515 N ILE B 295 SHEET 1 AA8 3 ASP B 208 PRO B 209 0 SHEET 2 AA8 3 PHE B 225 PHE B 227 1 O PHE B 225 N ASP B 208 SHEET 3 AA8 3 TRP B 216 GLU B 218 -1 N GLY B 217 O THR B 226 LINK OE2 GLU A 54 NA NA A 402 1555 1555 2.98 LINK OE1 GLU A 167 NA NA A 402 1555 1555 2.74 CISPEP 1 ALA A 57 PRO A 58 0 1.58 CISPEP 2 PRO A 82 PRO A 83 0 -1.06 CISPEP 3 ARG A 191 PRO A 192 0 -2.04 CISPEP 4 ALA B 57 PRO B 58 0 0.84 CISPEP 5 PRO B 82 PRO B 83 0 5.51 CISPEP 6 ARG B 191 PRO B 192 0 -1.03 SITE 1 AC1 11 ASP A 64 HIS A 66 ASP A 92 ARG A 221 SITE 2 AC1 11 HIS A 248 TYR A 272 HOH A 514 HOH A 526 SITE 3 AC1 11 HOH A 528 GLU B 218 ASP B 220 SITE 1 AC2 3 GLU A 54 ILE A 164 GLU A 167 SITE 1 AC3 10 GLU A 218 ASP A 220 ASP B 64 HIS B 66 SITE 2 AC3 10 ASP B 92 ARG B 221 HIS B 248 TYR B 272 SITE 3 AC3 10 HOH B 527 HOH B 528 CRYST1 90.832 90.832 206.717 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011009 0.006356 0.000000 0.00000 SCALE2 0.000000 0.012712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004838 0.00000