PDB Short entry for 5J7B HEADER TRANSFERASE/TRANSFERASE INHIBITOR 06-APR-16 5J7B TITLE THE IDENTIFICATION AND PHARMACOLOGICAL CHARACTERIZATION OF 6-(TERT- TITLE 2 BUTYLSULFONYL)-N-(5-FLUORO-1H-INDAZOL-3-YL)QUINOLIN-4-AMINE (GSK583), TITLE 3 A HIGHLY POTENT AND SELECTIVE INHIBITOR OF RIP2 KINASE, GSK583 TITLE 4 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-310; COMPND 5 SYNONYM: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- COMPND 6 ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- COMPND 7 INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, COMPND 8 TYROSINE-PROTEIN KINASE RIPK2; COMPND 9 EC: 2.7.11.1,2.7.10.2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE DOMAIN, KINASE INHIBITOR, STRUCTURE-BASED DRUG DESIGN, KEYWDS 2 INHIBITOR SELECTIVITY, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.CONVERY,L.N.CASILLAS,P.A.HAILE,B.J.VOTTA,A.S.LAKDAWALA REVDAT 3 27-SEP-23 5J7B 1 JRNL REMARK REVDAT 2 08-JUN-16 5J7B 1 JRNL REVDAT 1 18-MAY-16 5J7B 0 JRNL AUTH P.A.HAILE,B.J.VOTTA,R.W.MARQUIS,M.J.BURY,J.F.MEHLMANN, JRNL AUTH 2 R.SINGHAUS,A.K.CHARNLEY,A.S.LAKDAWALA,M.A.CONVERY, JRNL AUTH 3 D.B.LIPSHUTZ,B.M.DESAI,B.SWIFT,C.A.CAPRIOTTI,S.B.BERGER, JRNL AUTH 4 M.K.MAHAJAN,M.A.REILLY,E.J.RIVERA,H.H.SUN,R.NAGILLA, JRNL AUTH 5 A.M.BEAL,J.N.FINGER,M.N.COOK,B.W.KING,M.T.OUELLETTE, JRNL AUTH 6 R.D.TOTORITIS,M.PIERDOMENICO,A.NEGRONI,L.STRONATI, JRNL AUTH 7 S.CUCCHIARA,B.ZIOKOWSKI,A.VOSSENKAMPER,T.T.MACDONALD, JRNL AUTH 8 P.J.GOUGH,J.BERTIN,L.N.CASILLAS JRNL TITL THE IDENTIFICATION AND PHARMACOLOGICAL CHARACTERIZATION OF JRNL TITL 2 6-(TERT-BUTYLSULFONYL)-N-(5-FLUORO-1H-INDAZOL-3-YL) JRNL TITL 3 QUINOLIN-4-AMINE (GSK583), A HIGHLY POTENT AND SELECTIVE JRNL TITL 4 INHIBITOR OF RIP2 KINASE. JRNL REF J.MED.CHEM. V. 59 4867 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27109867 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00211 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 34651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1825 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2536 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4470 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -3.71000 REMARK 3 B12 (A**2) : 0.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4648 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6337 ; 1.298 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 3.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;32.159 ;23.430 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;10.358 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ; 8.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3506 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2225 ; 6.198 ; 9.474 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2769 ; 9.325 ;21.225 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2420 ; 6.970 ; 9.469 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7122 ;12.859 ;48.959 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 78.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5AR4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH7, 12% PEG 400, 250MM REMARK 280 CACL2. CRYSTALS SOAKED IN COMPOUND FOR 2 HOURS., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.52000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.76000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.76000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.52000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 LYS A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 ASP A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 HIS A 50 REMARK 465 ILE A 51 REMARK 465 HIS A 52 REMARK 465 THR A 53 REMARK 465 PRO A 54 REMARK 465 SER A 168 REMARK 465 LYS A 169 REMARK 465 TRP A 170 REMARK 465 ARG A 171 REMARK 465 MET A 172 REMARK 465 MET A 173 REMARK 465 SER A 174 REMARK 465 LEU A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 ALA A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 PRO A 200 REMARK 465 GLY A 201 REMARK 465 GLN A 202 REMARK 465 LYS A 203 REMARK 465 MET B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 LYS B -12 REMARK 465 ASP B -11 REMARK 465 ASP B -10 REMARK 465 ASP B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 3 REMARK 465 HIS B 50 REMARK 465 ILE B 51 REMARK 465 HIS B 52 REMARK 465 THR B 53 REMARK 465 PRO B 54 REMARK 465 LEU B 55 REMARK 465 LEU B 56 REMARK 465 ASP B 57 REMARK 465 SER B 168 REMARK 465 LYS B 169 REMARK 465 TRP B 170 REMARK 465 ARG B 171 REMARK 465 MET B 172 REMARK 465 MET B 173 REMARK 465 SER B 174 REMARK 465 LEU B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 LYS B 182 REMARK 465 SER B 183 REMARK 465 ALA B 184 REMARK 465 PRO B 185 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 GLN B 202 CG CD OE1 NE2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 581 O HOH A 610 1.81 REMARK 500 O HOH B 578 O HOH B 595 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 597 O HOH B 597 5554 2.09 REMARK 500 O HOH B 621 O HOH B 621 5554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 98.72 -62.56 REMARK 500 HIS A 145 -0.37 67.57 REMARK 500 ASP A 146 39.33 -141.80 REMARK 500 TYR A 198 -73.34 -76.67 REMARK 500 HIS B 145 -2.42 71.16 REMARK 500 ASP B 146 39.54 -141.75 REMARK 500 VAL B 249 97.17 -61.19 REMARK 500 ASN B 251 -166.20 -120.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 635 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B 620 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 621 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B 622 DISTANCE = 7.60 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J79 RELATED DB: PDB DBREF 5J7B A 1 310 UNP O43353 RIPK2_HUMAN 1 310 DBREF 5J7B B 1 310 UNP O43353 RIPK2_HUMAN 1 310 SEQADV 5J7B MET A -15 UNP O43353 INITIATING METHIONINE SEQADV 5J7B ASP A -14 UNP O43353 EXPRESSION TAG SEQADV 5J7B TYR A -13 UNP O43353 EXPRESSION TAG SEQADV 5J7B LYS A -12 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP A -11 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP A -10 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP A -9 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP A -8 UNP O43353 EXPRESSION TAG SEQADV 5J7B LYS A -7 UNP O43353 EXPRESSION TAG SEQADV 5J7B GLU A -6 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASN A -5 UNP O43353 EXPRESSION TAG SEQADV 5J7B LEU A -4 UNP O43353 EXPRESSION TAG SEQADV 5J7B TYR A -3 UNP O43353 EXPRESSION TAG SEQADV 5J7B PHE A -2 UNP O43353 EXPRESSION TAG SEQADV 5J7B GLN A -1 UNP O43353 EXPRESSION TAG SEQADV 5J7B GLY A 0 UNP O43353 EXPRESSION TAG SEQADV 5J7B MET B -15 UNP O43353 INITIATING METHIONINE SEQADV 5J7B ASP B -14 UNP O43353 EXPRESSION TAG SEQADV 5J7B TYR B -13 UNP O43353 EXPRESSION TAG SEQADV 5J7B LYS B -12 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP B -11 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP B -10 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP B -9 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASP B -8 UNP O43353 EXPRESSION TAG SEQADV 5J7B LYS B -7 UNP O43353 EXPRESSION TAG SEQADV 5J7B GLU B -6 UNP O43353 EXPRESSION TAG SEQADV 5J7B ASN B -5 UNP O43353 EXPRESSION TAG SEQADV 5J7B LEU B -4 UNP O43353 EXPRESSION TAG SEQADV 5J7B TYR B -3 UNP O43353 EXPRESSION TAG SEQADV 5J7B PHE B -2 UNP O43353 EXPRESSION TAG SEQADV 5J7B GLN B -1 UNP O43353 EXPRESSION TAG SEQADV 5J7B GLY B 0 UNP O43353 EXPRESSION TAG SEQRES 1 A 326 MET ASP TYR LYS ASP ASP ASP ASP LYS GLU ASN LEU TYR SEQRES 2 A 326 PHE GLN GLY MET ASN GLY GLU ALA ILE CYS SER ALA LEU SEQRES 3 A 326 PRO THR ILE PRO TYR HIS LYS LEU ALA ASP LEU ARG TYR SEQRES 4 A 326 LEU SER ARG GLY ALA SER GLY THR VAL SER SER ALA ARG SEQRES 5 A 326 HIS ALA ASP TRP ARG VAL GLN VAL ALA VAL LYS HIS LEU SEQRES 6 A 326 HIS ILE HIS THR PRO LEU LEU ASP SER GLU ARG LYS ASP SEQRES 7 A 326 VAL LEU ARG GLU ALA GLU ILE LEU HIS LYS ALA ARG PHE SEQRES 8 A 326 SER TYR ILE LEU PRO ILE LEU GLY ILE CYS ASN GLU PRO SEQRES 9 A 326 GLU PHE LEU GLY ILE VAL THR GLU TYR MET PRO ASN GLY SEQRES 10 A 326 SER LEU ASN GLU LEU LEU HIS ARG LYS THR GLU TYR PRO SEQRES 11 A 326 ASP VAL ALA TRP PRO LEU ARG PHE ARG ILE LEU HIS GLU SEQRES 12 A 326 ILE ALA LEU GLY VAL ASN TYR LEU HIS ASN MET THR PRO SEQRES 13 A 326 PRO LEU LEU HIS HIS ASP LEU LYS THR GLN ASN ILE LEU SEQRES 14 A 326 LEU ASP ASN GLU PHE HIS VAL LYS ILE ALA ASP PHE GLY SEQRES 15 A 326 LEU SER LYS TRP ARG MET MET SER LEU SER GLN SER ARG SEQRES 16 A 326 SER SER LYS SER ALA PRO GLU GLY GLY THR ILE ILE TYR SEQRES 17 A 326 MET PRO PRO GLU ASN TYR GLU PRO GLY GLN LYS SER ARG SEQRES 18 A 326 ALA SER ILE LYS HIS ASP ILE TYR SER TYR ALA VAL ILE SEQRES 19 A 326 THR TRP GLU VAL LEU SER ARG LYS GLN PRO PHE GLU ASP SEQRES 20 A 326 VAL THR ASN PRO LEU GLN ILE MET TYR SER VAL SER GLN SEQRES 21 A 326 GLY HIS ARG PRO VAL ILE ASN GLU GLU SER LEU PRO TYR SEQRES 22 A 326 ASP ILE PRO HIS ARG ALA ARG MET ILE SER LEU ILE GLU SEQRES 23 A 326 SER GLY TRP ALA GLN ASN PRO ASP GLU ARG PRO SER PHE SEQRES 24 A 326 LEU LYS CYS LEU ILE GLU LEU GLU PRO VAL LEU ARG THR SEQRES 25 A 326 PHE GLU GLU ILE THR PHE LEU GLU ALA VAL ILE GLN LEU SEQRES 26 A 326 LYS SEQRES 1 B 326 MET ASP TYR LYS ASP ASP ASP ASP LYS GLU ASN LEU TYR SEQRES 2 B 326 PHE GLN GLY MET ASN GLY GLU ALA ILE CYS SER ALA LEU SEQRES 3 B 326 PRO THR ILE PRO TYR HIS LYS LEU ALA ASP LEU ARG TYR SEQRES 4 B 326 LEU SER ARG GLY ALA SER GLY THR VAL SER SER ALA ARG SEQRES 5 B 326 HIS ALA ASP TRP ARG VAL GLN VAL ALA VAL LYS HIS LEU SEQRES 6 B 326 HIS ILE HIS THR PRO LEU LEU ASP SER GLU ARG LYS ASP SEQRES 7 B 326 VAL LEU ARG GLU ALA GLU ILE LEU HIS LYS ALA ARG PHE SEQRES 8 B 326 SER TYR ILE LEU PRO ILE LEU GLY ILE CYS ASN GLU PRO SEQRES 9 B 326 GLU PHE LEU GLY ILE VAL THR GLU TYR MET PRO ASN GLY SEQRES 10 B 326 SER LEU ASN GLU LEU LEU HIS ARG LYS THR GLU TYR PRO SEQRES 11 B 326 ASP VAL ALA TRP PRO LEU ARG PHE ARG ILE LEU HIS GLU SEQRES 12 B 326 ILE ALA LEU GLY VAL ASN TYR LEU HIS ASN MET THR PRO SEQRES 13 B 326 PRO LEU LEU HIS HIS ASP LEU LYS THR GLN ASN ILE LEU SEQRES 14 B 326 LEU ASP ASN GLU PHE HIS VAL LYS ILE ALA ASP PHE GLY SEQRES 15 B 326 LEU SER LYS TRP ARG MET MET SER LEU SER GLN SER ARG SEQRES 16 B 326 SER SER LYS SER ALA PRO GLU GLY GLY THR ILE ILE TYR SEQRES 17 B 326 MET PRO PRO GLU ASN TYR GLU PRO GLY GLN LYS SER ARG SEQRES 18 B 326 ALA SER ILE LYS HIS ASP ILE TYR SER TYR ALA VAL ILE SEQRES 19 B 326 THR TRP GLU VAL LEU SER ARG LYS GLN PRO PHE GLU ASP SEQRES 20 B 326 VAL THR ASN PRO LEU GLN ILE MET TYR SER VAL SER GLN SEQRES 21 B 326 GLY HIS ARG PRO VAL ILE ASN GLU GLU SER LEU PRO TYR SEQRES 22 B 326 ASP ILE PRO HIS ARG ALA ARG MET ILE SER LEU ILE GLU SEQRES 23 B 326 SER GLY TRP ALA GLN ASN PRO ASP GLU ARG PRO SER PHE SEQRES 24 B 326 LEU LYS CYS LEU ILE GLU LEU GLU PRO VAL LEU ARG THR SEQRES 25 B 326 PHE GLU GLU ILE THR PHE LEU GLU ALA VAL ILE GLN LEU SEQRES 26 B 326 LYS HET 6GD A 401 28 HET 6GD B 401 28 HETNAM 6GD 6-(TERT-BUTYLSULFONYL)-N-(5-FLUORO-2H-INDAZOL-3-YL) HETNAM 2 6GD QUINOLIN-4-AMINE FORMUL 3 6GD 2(C20 H19 F N4 O2 S) FORMUL 5 HOH *257(H2 O) HELIX 1 AA1 PRO A 14 HIS A 16 5 3 HELIX 2 AA2 SER A 58 ALA A 73 1 16 HELIX 3 AA3 SER A 102 ARG A 109 1 8 HELIX 4 AA4 ALA A 117 ASN A 137 1 21 HELIX 5 AA5 PRO A 194 TYR A 198 5 5 HELIX 6 AA6 LYS A 209 ARG A 225 1 17 HELIX 7 AA7 ASN A 234 GLN A 244 1 11 HELIX 8 AA8 HIS A 261 TRP A 273 1 13 HELIX 9 AA9 ASN A 276 ARG A 280 5 5 HELIX 10 AB1 SER A 282 THR A 296 1 15 HELIX 11 AB2 GLU A 298 LYS A 310 1 13 HELIX 12 AB3 PRO B 14 HIS B 16 5 3 HELIX 13 AB4 ARG B 60 ALA B 73 1 14 HELIX 14 AB5 SER B 102 ARG B 109 1 8 HELIX 15 AB6 ALA B 117 ASN B 137 1 21 HELIX 16 AB7 LYS B 148 GLN B 150 5 3 HELIX 17 AB8 PRO B 194 GLU B 199 5 6 HELIX 18 AB9 LYS B 209 ARG B 225 1 17 HELIX 19 AC1 ASN B 234 GLN B 244 1 11 HELIX 20 AC2 HIS B 261 TRP B 273 1 13 HELIX 21 AC3 ASN B 276 ARG B 280 5 5 HELIX 22 AC4 SER B 282 THR B 296 1 15 HELIX 23 AC5 GLU B 298 LYS B 310 1 13 SHEET 1 AA1 2 CYS A 7 ALA A 9 0 SHEET 2 AA1 2 CYS B 7 ALA B 9 -1 O SER B 8 N SER A 8 SHEET 1 AA2 5 LEU A 18 GLY A 27 0 SHEET 2 AA2 5 GLY A 30 HIS A 37 -1 O VAL A 32 N SER A 25 SHEET 3 AA2 5 GLN A 43 HIS A 48 -1 O HIS A 48 N THR A 31 SHEET 4 AA2 5 LEU A 91 GLU A 96 -1 O THR A 95 N ALA A 45 SHEET 5 AA2 5 ILE A 81 ASN A 86 -1 N CYS A 85 O GLY A 92 SHEET 1 AA3 2 ILE A 152 LEU A 154 0 SHEET 2 AA3 2 VAL A 160 ILE A 162 -1 O LYS A 161 N LEU A 153 SHEET 1 AA4 5 LEU B 18 GLY B 27 0 SHEET 2 AA4 5 GLY B 30 HIS B 37 -1 O VAL B 32 N SER B 25 SHEET 3 AA4 5 GLN B 43 HIS B 48 -1 O VAL B 46 N SER B 33 SHEET 4 AA4 5 LEU B 91 GLU B 96 -1 O THR B 95 N ALA B 45 SHEET 5 AA4 5 ILE B 81 ASN B 86 -1 N LEU B 82 O VAL B 94 SHEET 1 AA5 2 ILE B 152 LEU B 154 0 SHEET 2 AA5 2 VAL B 160 ILE B 162 -1 O LYS B 161 N LEU B 153 CISPEP 1 THR A 139 PRO A 140 0 1.30 CISPEP 2 THR B 139 PRO B 140 0 0.65 SITE 1 AC1 16 LEU A 24 SER A 25 ALA A 45 LYS A 47 SITE 2 AC1 16 GLU A 66 ILE A 93 THR A 95 GLU A 96 SITE 3 AC1 16 MET A 98 GLY A 101 GLU A 105 LEU A 153 SITE 4 AC1 16 ALA A 163 ASP A 164 HOH A 518 HOH A 545 SITE 1 AC2 15 SER B 25 ALA B 45 LYS B 47 GLU B 66 SITE 2 AC2 15 LEU B 79 ILE B 93 THR B 95 GLU B 96 SITE 3 AC2 15 MET B 98 GLY B 101 LEU B 153 ALA B 163 SITE 4 AC2 15 ASP B 164 HOH B 530 HOH B 559 CRYST1 132.381 132.381 107.280 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007554 0.004361 0.000000 0.00000 SCALE2 0.000000 0.008723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009321 0.00000