PDB Short entry for 5JEL HEADER IMMUNE SYSTEM 18-APR-16 5JEL TITLE PHOSPHORYLATED TRIF IN COMPLEX WITH IRF-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 189-427; COMPND 5 SYNONYM: IRF-3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PHOSPHORYLATED TRIF PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INNATE IMMUNITY, SIGNALING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,P.LI REVDAT 2 29-JUN-16 5JEL 1 JRNL REVDAT 1 15-JUN-16 5JEL 0 JRNL AUTH B.ZHAO,C.SHU,X.GAO,B.SANKARAN,F.DU,C.L.SHELTON,A.B.HERR, JRNL AUTH 2 J.Y.JI,P.LI JRNL TITL STRUCTURAL BASIS FOR CONCERTED RECRUITMENT AND ACTIVATION OF JRNL TITL 2 IRF-3 BY INNATE IMMUNE ADAPTOR PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E3403 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27302953 JRNL DOI 10.1073/PNAS.1603269113 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8661 - 3.8566 1.00 3811 153 0.1494 0.1647 REMARK 3 2 3.8566 - 3.0613 1.00 3672 149 0.1487 0.1843 REMARK 3 3 3.0613 - 2.6744 1.00 3619 149 0.1767 0.1774 REMARK 3 4 2.6744 - 2.4299 1.00 3591 143 0.1835 0.2075 REMARK 3 5 2.4299 - 2.2557 1.00 3600 146 0.1758 0.1836 REMARK 3 6 2.2557 - 2.1227 1.00 3581 142 0.1686 0.1913 REMARK 3 7 2.1227 - 2.0164 1.00 3570 143 0.1698 0.1808 REMARK 3 8 2.0164 - 1.9287 1.00 3563 139 0.1721 0.1808 REMARK 3 9 1.9287 - 1.8544 1.00 3565 142 0.1718 0.2091 REMARK 3 10 1.8544 - 1.7904 1.00 3544 142 0.1826 0.2006 REMARK 3 11 1.7904 - 1.7344 1.00 3510 141 0.1926 0.2120 REMARK 3 12 1.7344 - 1.6849 1.00 3553 142 0.2010 0.2174 REMARK 3 13 1.6849 - 1.6405 1.00 3525 140 0.2217 0.2729 REMARK 3 14 1.6405 - 1.6005 0.99 3525 140 0.2557 0.2820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2016 REMARK 3 ANGLE : 1.039 2755 REMARK 3 CHIRALITY : 0.044 294 REMARK 3 PLANARITY : 0.005 357 REMARK 3 DIHEDRAL : 14.083 732 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0373 76.2505 137.9856 REMARK 3 T TENSOR REMARK 3 T11: 0.2647 T22: 0.1286 REMARK 3 T33: 0.1833 T12: -0.0750 REMARK 3 T13: 0.0254 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.3825 L22: 1.1959 REMARK 3 L33: 1.7237 L12: -0.1224 REMARK 3 L13: -0.3998 L23: 0.3050 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: -0.0242 S13: 0.2070 REMARK 3 S21: 0.0553 S22: 0.0484 S23: -0.2048 REMARK 3 S31: -0.3382 S32: 0.2624 S33: -0.1049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5756 63.4682 125.8711 REMARK 3 T TENSOR REMARK 3 T11: 0.4998 T22: 0.2586 REMARK 3 T33: 0.3162 T12: -0.1308 REMARK 3 T13: -0.0010 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 0.2907 L22: 6.4181 REMARK 3 L33: 0.0087 L12: 0.9264 REMARK 3 L13: -0.0431 L23: -0.2449 REMARK 3 S TENSOR REMARK 3 S11: -0.2570 S12: 0.4230 S13: -0.2402 REMARK 3 S21: -1.4219 S22: 0.4897 S23: -0.2564 REMARK 3 S31: 0.5140 S32: -0.1100 S33: -0.1180 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5515 73.5248 140.1572 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.1062 REMARK 3 T33: 0.1518 T12: -0.0033 REMARK 3 T13: 0.0242 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.4286 L22: 2.1939 REMARK 3 L33: 2.1654 L12: 0.6739 REMARK 3 L13: 0.1952 L23: 0.5641 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.0027 S13: 0.1235 REMARK 3 S21: 0.0318 S22: 0.1134 S23: 0.1448 REMARK 3 S31: -0.1697 S32: -0.1537 S33: -0.1020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 384 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4483 83.6407 152.6151 REMARK 3 T TENSOR REMARK 3 T11: 0.4430 T22: 0.6303 REMARK 3 T33: 0.4120 T12: -0.2083 REMARK 3 T13: -0.0165 T23: -0.1624 REMARK 3 L TENSOR REMARK 3 L11: 3.5840 L22: 5.4460 REMARK 3 L33: 1.2762 L12: -0.3656 REMARK 3 L13: 2.0281 L23: 0.6268 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.7236 S13: 0.4084 REMARK 3 S21: 0.6206 S22: 0.1312 S23: -0.6044 REMARK 3 S31: -0.8914 S32: 1.0928 S33: -0.1690 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7432 92.6213 152.6310 REMARK 3 T TENSOR REMARK 3 T11: 0.7959 T22: 0.3371 REMARK 3 T33: 0.5142 T12: -0.1324 REMARK 3 T13: 0.1332 T23: -0.1932 REMARK 3 L TENSOR REMARK 3 L11: 1.4907 L22: 2.9961 REMARK 3 L33: 1.3428 L12: -0.3507 REMARK 3 L13: 0.0312 L23: 0.3482 REMARK 3 S TENSOR REMARK 3 S11: 0.2045 S12: -0.2982 S13: 0.6928 REMARK 3 S21: -0.0469 S22: 0.0737 S23: -0.1591 REMARK 3 S31: -0.8053 S32: 0.1623 S33: 0.0419 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 199 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6943 55.5182 133.0059 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.2764 REMARK 3 T33: 0.3463 T12: -0.1067 REMARK 3 T13: 0.0465 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 5.7478 L22: 5.0455 REMARK 3 L33: 9.3323 L12: 1.6794 REMARK 3 L13: 2.0667 L23: -5.1512 REMARK 3 S TENSOR REMARK 3 S11: -0.1574 S12: -0.2627 S13: -0.2537 REMARK 3 S21: 0.2988 S22: 0.5296 S23: 1.6387 REMARK 3 S31: 0.3422 S32: -0.9930 S33: -0.3610 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0150 65.6488 122.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.5446 T22: 0.4989 REMARK 3 T33: 0.2912 T12: -0.1432 REMARK 3 T13: -0.0631 T23: 0.0953 REMARK 3 L TENSOR REMARK 3 L11: 2.3068 L22: 6.6207 REMARK 3 L33: 3.2380 L12: -3.8189 REMARK 3 L13: 2.5414 L23: -4.5687 REMARK 3 S TENSOR REMARK 3 S11: -0.2244 S12: 1.3556 S13: 0.5867 REMARK 3 S21: -1.4410 S22: -0.1740 S23: 0.0488 REMARK 3 S31: 0.3982 S32: -0.0935 S33: 0.4221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52282 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.848 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAAC PH 4.6, 2.0M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.06800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.53400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.53400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.06800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.11235 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 297.73800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 531 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 737 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 PHE A 188 REMARK 465 GLY A 423 REMARK 465 PRO A 424 REMARK 465 GLY A 425 REMARK 465 GLU A 426 REMARK 465 SER A 427 REMARK 465 PRO B 213 REMARK 465 THR B 214 REMARK 465 MET B 215 REMARK 465 PRO B 216 REMARK 465 PHE B 217 REMARK 465 TRP B 218 REMARK 465 SER B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 296 O HOH A 501 2.15 REMARK 500 O HOH A 667 O HOH A 679 2.18 REMARK 500 O LYS A 313 O HOH A 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 231 46.76 33.31 REMARK 500 SER A 251 153.94 -45.22 REMARK 500 ASP A 314 -11.38 73.82 REMARK 500 TYR A 342 -2.36 -142.15 REMARK 500 SER A 385 -148.97 56.11 REMARK 500 SER A 386 36.38 -159.57 REMARK 500 LEU A 387 -157.77 -89.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 327 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 328 DISTANCE = 6.66 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JEJ RELATED DB: PDB REMARK 900 RELATED ID: 5JEK RELATED DB: PDB REMARK 900 RELATED ID: 5JEM RELATED DB: PDB REMARK 900 RELATED ID: 5JEO RELATED DB: PDB REMARK 900 RELATED ID: 5JER RELATED DB: PDB DBREF 5JEL A 189 427 UNP Q14653 IRF3_HUMAN 189 427 DBREF 5JEL B 199 219 PDB 5JEL 5JEL 199 219 SEQADV 5JEL SER A 186 UNP Q14653 EXPRESSION TAG SEQADV 5JEL GLU A 187 UNP Q14653 EXPRESSION TAG SEQADV 5JEL PHE A 188 UNP Q14653 EXPRESSION TAG SEQRES 1 A 242 SER GLU PHE GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 A 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 A 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 A 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 A 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 A 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 A 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 A 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 A 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 A 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 A 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 A 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 A 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 A 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 A 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 A 242 VAL GLY GLY ALA SER SER LEU GLU ASN THR VAL ASP LEU SEQRES 17 A 242 HIS ILE SER ASN SER HIS PRO LEU SER LEU THR SER ASP SEQRES 18 A 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 A 242 ASP PHE GLN GLY PRO GLY GLU SER SEQRES 1 B 21 SER PRO ALA SEP LEU ALA SEP ASN LEU GLU ILE SEP GLN SEQRES 2 B 21 SER PRO THR MET PRO PHE TRP SER HET SEP B 202 10 HET SEP B 205 10 HET SEP B 210 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 3(C3 H8 N O6 P) FORMUL 3 HOH *267(H2 O) HELIX 1 AA1 ASN A 190 VAL A 197 5 8 HELIX 2 AA2 ASP A 254 CYS A 267 1 14 HELIX 3 AA3 LEU A 322 GLU A 334 1 13 HELIX 4 AA4 PRO A 357 ARG A 361 5 5 HELIX 5 AA5 THR A 370 ALA A 384 1 15 HELIX 6 AA6 SER A 405 GLY A 418 1 14 HELIX 7 AA7 PRO B 200 LEU B 207 1 8 SHEET 1 AA1 6 ARG A 213 ILE A 220 0 SHEET 2 AA1 6 PHE A 204 TYR A 210 -1 N VAL A 206 O GLN A 218 SHEET 3 AA1 6 VAL A 363 PRO A 369 -1 O LYS A 366 N THR A 207 SHEET 4 AA1 6 ALA A 343 VAL A 348 -1 N LEU A 344 O VAL A 367 SHEET 5 AA1 6 THR A 291 SER A 296 -1 N TYR A 292 O CYS A 347 SHEET 6 AA1 6 GLY A 309 GLU A 310 -1 O GLY A 309 N TRP A 293 SHEET 1 AA2 5 TRP A 241 THR A 244 0 SHEET 2 AA2 5 LEU A 226 VAL A 229 1 N ARG A 227 O VAL A 243 SHEET 3 AA2 5 LEU A 272 ALA A 277 -1 O LEU A 272 N LEU A 228 SHEET 4 AA2 5 TRP A 280 ARG A 285 -1 O TRP A 282 N TRP A 275 SHEET 5 AA2 5 GLY A 317 ASP A 321 -1 O VAL A 319 N LEU A 281 SHEET 1 AA3 2 GLU A 388 VAL A 391 0 SHEET 2 AA3 2 LEU A 401 THR A 404 -1 O LEU A 401 N VAL A 391 LINK C ALA B 201 N SEP B 202 1555 1555 1.33 LINK C SEP B 202 N LEU B 203 1555 1555 1.33 LINK C ALA B 204 N SEP B 205 1555 1555 1.33 LINK C SEP B 205 N ASN B 206 1555 1555 1.33 LINK C ILE B 209 N SEP B 210 1555 1555 1.32 LINK C SEP B 210 N GLN B 211 1555 1555 1.33 CISPEP 1 VAL A 233 GLY A 234 0 0.19 CRYST1 72.811 72.811 127.602 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013734 0.007929 0.000000 0.00000 SCALE2 0.000000 0.015859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007837 0.00000