PDB Short entry for 5JLW HEADER TRANSCRIPTION REGULATOR/DNA 27-APR-16 5JLW TITLE ANTPHD WITH 15BP DNA DUPLEX R-MONOTHIOATED AT CYTIDINE-8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOTIC PROTEIN ANTENNAPEDIA; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C7R) COMPND 8 P*AP*TP*TP*AP*GP*AP*G)-3'); COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: R-MONOTHIOLATED PHOSPHATE AT CYTIDINE 8; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)- COMPND 14 3'); COMPND 15 CHAIN: C, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ANTP, CG1028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 11 ORGANISM_TAXID: 32644; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 15 ORGANISM_TAXID: 32644 KEYWDS HOMEODOMAIN, DNA-BINDING PROTEIN, COMPLEX (HOMEODOMAIN-DNA), KEYWDS 2 TRANSCRIPTION-DNA COMPLEX, TRANSCRIPTION REGULATOR-DNA COMPLEX, KEYWDS 3 MONOTHIOLATED DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.A.WHITE,L.ZANDARASHVILI,J.IWAHARA,D.NGUYEN REVDAT 7 25-DEC-19 5JLW 1 DBREF REVDAT 6 07-MAR-18 5JLW 1 REMARK REVDAT 5 27-SEP-17 5JLW 1 REMARK REVDAT 4 20-SEP-17 5JLW 1 REMARK REVDAT 3 14-SEP-16 5JLW 1 JRNL REVDAT 2 13-JUL-16 5JLW 1 TITLE REVDAT 1 22-JUN-16 5JLW 0 JRNL AUTH D.NGUYEN,L.ZANDARASHVILI,M.A.WHITE,J.IWAHARA JRNL TITL STEREOSPECIFIC EFFECTS OF OXYGEN-TO-SULFUR SUBSTITUTION IN JRNL TITL 2 DNA PHOSPHATE ON ION PAIR DYNAMICS AND PROTEIN-DNA AFFINITY. JRNL REF CHEMBIOCHEM V. 17 1636 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 27271797 JRNL DOI 10.1002/CBIC.201600265 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 48110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.2984 - 5.3334 0.89 2530 123 0.1974 0.2063 REMARK 3 2 5.3334 - 4.2481 0.99 2775 146 0.1672 0.2012 REMARK 3 3 4.2481 - 3.7155 0.99 2750 150 0.1661 0.1956 REMARK 3 4 3.7155 - 3.3778 0.98 2716 142 0.1729 0.1849 REMARK 3 5 3.3778 - 3.1368 0.95 2670 140 0.1893 0.2540 REMARK 3 6 3.1368 - 2.9525 0.98 2762 144 0.2309 0.2196 REMARK 3 7 2.9525 - 2.8051 0.99 2759 141 0.2501 0.2547 REMARK 3 8 2.8051 - 2.6833 0.98 2764 142 0.2556 0.3459 REMARK 3 9 2.6833 - 2.5803 0.98 2772 143 0.2754 0.2874 REMARK 3 10 2.5803 - 2.4914 0.98 2723 146 0.2711 0.2916 REMARK 3 11 2.4914 - 2.4137 0.98 2729 140 0.2873 0.3712 REMARK 3 12 2.4137 - 2.3448 0.99 2765 145 0.2776 0.2849 REMARK 3 13 2.3448 - 2.2832 0.98 2743 143 0.2904 0.3455 REMARK 3 14 2.2832 - 2.2276 0.98 2758 148 0.3105 0.2875 REMARK 3 15 2.2276 - 2.1770 0.97 2728 144 0.3112 0.3401 REMARK 3 16 2.1770 - 2.1307 0.96 2691 142 0.3272 0.3511 REMARK 3 17 2.1307 - 2.0881 0.75 2085 111 0.4013 0.3914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2479 REMARK 3 ANGLE : 1.117 3595 REMARK 3 CHIRALITY : 0.049 383 REMARK 3 PLANARITY : 0.007 248 REMARK 3 DIHEDRAL : 27.454 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 33 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:13) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5127 14.2077 2.2277 REMARK 3 T TENSOR REMARK 3 T11: 0.4573 T22: 0.4652 REMARK 3 T33: 0.3360 T12: 0.0799 REMARK 3 T13: 0.0037 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.0496 L22: 0.0448 REMARK 3 L33: 0.0184 L12: -0.0397 REMARK 3 L13: 0.0075 L23: -0.0222 REMARK 3 S TENSOR REMARK 3 S11: 0.1582 S12: 0.2623 S13: 0.1354 REMARK 3 S21: 0.1984 S22: 0.1272 S23: -0.1624 REMARK 3 S31: 0.0791 S32: 0.1457 S33: 0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 14:17) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2594 14.5362 7.9079 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.3417 REMARK 3 T33: 0.3302 T12: 0.0752 REMARK 3 T13: 0.0221 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0123 L22: 0.0157 REMARK 3 L33: 0.0182 L12: 0.0145 REMARK 3 L13: -0.0053 L23: -0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.2069 S12: -0.0810 S13: -0.0267 REMARK 3 S21: 0.0920 S22: 0.0851 S23: 0.0857 REMARK 3 S31: 0.0318 S32: 0.0469 S33: 0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 18:23) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5248 14.9218 8.4647 REMARK 3 T TENSOR REMARK 3 T11: 0.3967 T22: 0.4196 REMARK 3 T33: 0.3487 T12: 0.1307 REMARK 3 T13: -0.0003 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.0056 L22: 0.0293 REMARK 3 L33: 0.0141 L12: 0.0127 REMARK 3 L13: -0.0065 L23: -0.0155 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: -0.0071 S13: 0.2150 REMARK 3 S21: -0.0494 S22: -0.0060 S23: 0.1344 REMARK 3 S31: 0.2600 S32: -0.0501 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 24:28) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7271 21.1037 2.8856 REMARK 3 T TENSOR REMARK 3 T11: 0.3865 T22: 0.4398 REMARK 3 T33: 0.4324 T12: 0.1128 REMARK 3 T13: -0.0996 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 0.0177 L22: 0.0148 REMARK 3 L33: 0.0147 L12: -0.0012 REMARK 3 L13: -0.0174 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.1423 S13: 0.0548 REMARK 3 S21: 0.0684 S22: 0.1946 S23: 0.1679 REMARK 3 S31: 0.0724 S32: -0.1323 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 29:33) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4297 29.3937 4.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.5808 T22: 0.3685 REMARK 3 T33: 0.4730 T12: 0.0606 REMARK 3 T13: -0.0752 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.0360 L22: 0.0168 REMARK 3 L33: 0.0164 L12: 0.0080 REMARK 3 L13: 0.0184 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.0576 S13: 0.3126 REMARK 3 S21: -0.0903 S22: 0.1155 S23: 0.2068 REMARK 3 S31: -0.0268 S32: -0.0923 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 34:38) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8118 26.2080 8.1274 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.3870 REMARK 3 T33: 0.4014 T12: 0.0485 REMARK 3 T13: -0.0002 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0325 L22: 0.0025 REMARK 3 L33: 0.0130 L12: 0.0043 REMARK 3 L13: -0.0019 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.1561 S13: 0.0818 REMARK 3 S21: 0.0434 S22: -0.0178 S23: 0.0050 REMARK 3 S31: 0.0465 S32: 0.0008 S33: -0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 39:44) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6622 24.4167 0.5328 REMARK 3 T TENSOR REMARK 3 T11: 0.4368 T22: 0.4818 REMARK 3 T33: 0.3506 T12: 0.1320 REMARK 3 T13: 0.0265 T23: 0.0872 REMARK 3 L TENSOR REMARK 3 L11: 0.0178 L22: 0.0250 REMARK 3 L33: 0.0142 L12: -0.0056 REMARK 3 L13: -0.0126 L23: 0.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: 0.0699 S13: 0.1150 REMARK 3 S21: -0.2164 S22: -0.1068 S23: -0.1041 REMARK 3 S31: -0.1018 S32: 0.1311 S33: -0.0009 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 45:52) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3651 19.0645 -2.4554 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.3333 REMARK 3 T33: 0.2816 T12: 0.0779 REMARK 3 T13: -0.0508 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.0141 L22: 0.0095 REMARK 3 L33: 0.0300 L12: -0.0059 REMARK 3 L13: -0.0064 L23: 0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: 0.0915 S13: -0.0167 REMARK 3 S21: -0.2433 S22: -0.0625 S23: 0.1602 REMARK 3 S31: -0.1857 S32: -0.0217 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 53:56) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8167 12.6528 -3.0156 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.3049 REMARK 3 T33: 0.4312 T12: 0.0096 REMARK 3 T13: -0.1706 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.0037 L22: 0.0206 REMARK 3 L33: 0.0113 L12: -0.0098 REMARK 3 L13: -0.0063 L23: 0.0110 REMARK 3 S TENSOR REMARK 3 S11: 0.2079 S12: 0.1872 S13: -0.1025 REMARK 3 S21: 0.1173 S22: -0.0062 S23: 0.1016 REMARK 3 S31: 0.0706 S32: -0.0812 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 57:61) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1260 7.6904 -2.5273 REMARK 3 T TENSOR REMARK 3 T11: 0.7798 T22: 0.6843 REMARK 3 T33: 0.9737 T12: -0.1291 REMARK 3 T13: -0.0380 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.0036 L22: 0.0122 REMARK 3 L33: 0.0052 L12: 0.0035 REMARK 3 L13: 0.0029 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.1025 S12: -0.0175 S13: -0.0883 REMARK 3 S21: 0.0239 S22: 0.0138 S23: -0.0294 REMARK 3 S31: 0.0604 S32: -0.1447 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5180 34.7578 -11.2167 REMARK 3 T TENSOR REMARK 3 T11: 0.5190 T22: 0.4169 REMARK 3 T33: 0.4931 T12: 0.1482 REMARK 3 T13: -0.0803 T23: 0.1150 REMARK 3 L TENSOR REMARK 3 L11: 0.0395 L22: 0.0588 REMARK 3 L33: 0.0199 L12: 0.0490 REMARK 3 L13: 0.0251 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.4066 S13: -0.0416 REMARK 3 S21: 0.2230 S22: -0.3126 S23: 0.0450 REMARK 3 S31: -0.1630 S32: 0.3569 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 6:11) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3663 15.6961 -13.4554 REMARK 3 T TENSOR REMARK 3 T11: 0.6510 T22: 0.4965 REMARK 3 T33: 0.4075 T12: 0.2290 REMARK 3 T13: -0.2267 T23: -0.1353 REMARK 3 L TENSOR REMARK 3 L11: 0.8714 L22: 1.2149 REMARK 3 L33: 0.8378 L12: 0.6051 REMARK 3 L13: -0.8521 L23: -0.5783 REMARK 3 S TENSOR REMARK 3 S11: 0.4452 S12: 0.1762 S13: -0.3019 REMARK 3 S21: -0.1130 S22: -0.0093 S23: 0.3255 REMARK 3 S31: 0.2580 S32: -0.0513 S33: 0.4434 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3515 8.7437 -9.7201 REMARK 3 T TENSOR REMARK 3 T11: 0.6763 T22: 0.4917 REMARK 3 T33: 0.3993 T12: 0.2085 REMARK 3 T13: 0.0346 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 0.0075 L22: 0.0273 REMARK 3 L33: 0.0239 L12: 0.0148 REMARK 3 L13: 0.0032 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.3458 S12: 0.3006 S13: -0.0284 REMARK 3 S21: 0.2780 S22: -0.2966 S23: 0.1384 REMARK 3 S31: -0.4057 S32: 0.2197 S33: -0.0004 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5924 5.8472 -8.4403 REMARK 3 T TENSOR REMARK 3 T11: 0.5034 T22: 0.4363 REMARK 3 T33: 0.3705 T12: 0.1552 REMARK 3 T13: -0.0597 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 0.0781 L22: 0.0172 REMARK 3 L33: 0.0461 L12: -0.0179 REMARK 3 L13: 0.0071 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.1706 S12: 0.3536 S13: 0.0226 REMARK 3 S21: 0.0610 S22: -0.0401 S23: 0.0464 REMARK 3 S31: 0.1723 S32: -0.2098 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 8:11) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8468 21.6942 -17.2384 REMARK 3 T TENSOR REMARK 3 T11: 0.9125 T22: 0.9284 REMARK 3 T33: 0.5205 T12: 0.9671 REMARK 3 T13: -0.1961 T23: 0.4665 REMARK 3 L TENSOR REMARK 3 L11: 0.0545 L22: 0.4064 REMARK 3 L33: 0.1311 L12: -0.1297 REMARK 3 L13: 0.0178 L23: -0.1724 REMARK 3 S TENSOR REMARK 3 S11: -0.2310 S12: 0.3629 S13: 0.4136 REMARK 3 S21: -0.2340 S22: -0.1323 S23: 0.0138 REMARK 3 S31: -0.1920 S32: 0.1081 S33: -0.4102 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN C AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8798 27.9153 -11.3182 REMARK 3 T TENSOR REMARK 3 T11: 0.6997 T22: 0.4326 REMARK 3 T33: 0.4676 T12: 0.1393 REMARK 3 T13: -0.1708 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.0278 L22: 0.0307 REMARK 3 L33: 0.0199 L12: 0.0252 REMARK 3 L13: -0.0163 L23: -0.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.5024 S12: 0.1280 S13: -0.0762 REMARK 3 S21: 0.1135 S22: -0.4294 S23: 0.0042 REMARK 3 S31: 0.1348 S32: -0.1076 S33: -0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN D AND RESID 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4671 30.5294 28.1017 REMARK 3 T TENSOR REMARK 3 T11: 0.7544 T22: 0.4583 REMARK 3 T33: 0.4789 T12: 0.0573 REMARK 3 T13: -0.0064 T23: -0.0890 REMARK 3 L TENSOR REMARK 3 L11: 0.0098 L22: 0.0160 REMARK 3 L33: 0.0110 L12: -0.0098 REMARK 3 L13: 0.0086 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.0014 S13: 0.2076 REMARK 3 S21: 0.0490 S22: -0.0382 S23: -0.0425 REMARK 3 S31: -0.2602 S32: -0.1766 S33: -0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN D AND RESID 11:15) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8312 26.8837 17.8332 REMARK 3 T TENSOR REMARK 3 T11: 0.4094 T22: 0.3222 REMARK 3 T33: 0.2778 T12: 0.1050 REMARK 3 T13: -0.0350 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0069 L22: 0.0052 REMARK 3 L33: 0.0052 L12: -0.0046 REMARK 3 L13: 0.0034 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0555 S12: 0.0038 S13: 0.0025 REMARK 3 S21: -0.1912 S22: -0.1320 S23: 0.0888 REMARK 3 S31: -0.1667 S32: 0.0066 S33: 0.0002 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN D AND RESID 16:21) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9927 18.0322 18.9632 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.3624 REMARK 3 T33: 0.2982 T12: 0.1107 REMARK 3 T13: 0.0112 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.0162 L22: 0.0069 REMARK 3 L33: 0.0142 L12: -0.0055 REMARK 3 L13: -0.0048 L23: -0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0075 S13: -0.0395 REMARK 3 S21: -0.2512 S22: 0.0047 S23: -0.0062 REMARK 3 S31: 0.0620 S32: -0.2051 S33: 0.0003 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN D AND RESID 22:25) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1823 11.1436 19.2918 REMARK 3 T TENSOR REMARK 3 T11: 0.3785 T22: 0.3901 REMARK 3 T33: 0.4218 T12: 0.0555 REMARK 3 T13: -0.0129 T23: -0.0983 REMARK 3 L TENSOR REMARK 3 L11: 0.0059 L22: 0.0138 REMARK 3 L33: 0.0140 L12: 0.0096 REMARK 3 L13: -0.0020 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.1877 S12: 0.0292 S13: -0.1216 REMARK 3 S21: 0.0572 S22: 0.0041 S23: 0.0809 REMARK 3 S31: 0.0974 S32: -0.0574 S33: 0.0004 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN D AND RESID 26:29) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2182 10.3899 24.9197 REMARK 3 T TENSOR REMARK 3 T11: 0.4379 T22: 0.3937 REMARK 3 T33: 0.3490 T12: 0.1070 REMARK 3 T13: 0.0246 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0831 L22: 0.0142 REMARK 3 L33: 0.0212 L12: -0.0015 REMARK 3 L13: -0.0208 L23: 0.0180 REMARK 3 S TENSOR REMARK 3 S11: 0.1499 S12: -0.1231 S13: 0.0896 REMARK 3 S21: -0.1614 S22: 0.0402 S23: 0.0936 REMARK 3 S31: 0.1230 S32: 0.0913 S33: 0.0010 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN D AND RESID 30:34) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2705 13.2343 20.0024 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.5342 REMARK 3 T33: 0.3031 T12: 0.1447 REMARK 3 T13: 0.0554 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 0.0035 L22: 0.0100 REMARK 3 L33: 0.0025 L12: -0.0022 REMARK 3 L13: 0.0014 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: 0.0137 S13: -0.0558 REMARK 3 S21: -0.1041 S22: 0.0204 S23: 0.0184 REMARK 3 S31: 0.0113 S32: 0.0515 S33: 0.0001 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN D AND RESID 35:39) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8528 21.9391 18.9721 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.4015 REMARK 3 T33: 0.3400 T12: 0.0321 REMARK 3 T13: -0.0164 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.0217 L22: 0.0041 REMARK 3 L33: 0.0061 L12: -0.0049 REMARK 3 L13: 0.0010 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.0994 S12: 0.0388 S13: -0.0827 REMARK 3 S21: -0.0711 S22: -0.0300 S23: 0.0170 REMARK 3 S31: -0.0521 S32: 0.0854 S33: -0.0000 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN D AND RESID 40:43) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7760 22.7466 25.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.4244 T22: 0.5524 REMARK 3 T33: 0.3485 T12: -0.0940 REMARK 3 T13: 0.0450 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.0216 L22: 0.0283 REMARK 3 L33: 0.0080 L12: 0.0205 REMARK 3 L13: -0.0006 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.1563 S13: -0.1903 REMARK 3 S21: -0.1860 S22: -0.0249 S23: -0.1465 REMARK 3 S31: -0.1874 S32: 0.1668 S33: 0.0006 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN D AND RESID 44:53) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8669 18.2883 29.6494 REMARK 3 T TENSOR REMARK 3 T11: 0.1887 T22: 0.3241 REMARK 3 T33: 0.2434 T12: 0.0764 REMARK 3 T13: -0.0079 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0204 L22: 0.0344 REMARK 3 L33: 0.0470 L12: 0.0082 REMARK 3 L13: -0.0322 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: 0.0701 S13: 0.0715 REMARK 3 S21: -0.0122 S22: 0.0782 S23: 0.0961 REMARK 3 S31: 0.0436 S32: 0.0480 S33: -0.0001 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: (CHAIN D AND RESID 54:57) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6508 13.8808 29.6776 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.4428 REMARK 3 T33: 0.4096 T12: 0.0283 REMARK 3 T13: 0.0379 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0177 REMARK 3 L33: 0.0162 L12: -0.0047 REMARK 3 L13: 0.0013 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0681 S12: 0.0326 S13: 0.0720 REMARK 3 S21: 0.1725 S22: -0.0600 S23: 0.0935 REMARK 3 S31: 0.0444 S32: -0.0426 S33: -0.0003 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: (CHAIN D AND RESID 58:61) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3090 13.5322 30.4444 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.8853 REMARK 3 T33: 0.5544 T12: -0.0787 REMARK 3 T13: 0.0978 T23: -0.1132 REMARK 3 L TENSOR REMARK 3 L11: 0.0079 L22: 0.0255 REMARK 3 L33: 0.0717 L12: -0.0136 REMARK 3 L13: 0.0225 L23: -0.0429 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.0167 S13: 0.0171 REMARK 3 S21: 0.0032 S22: -0.0875 S23: 0.0065 REMARK 3 S31: 0.0197 S32: -0.0688 S33: -0.0045 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: (CHAIN E AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6665 7.8999 37.3251 REMARK 3 T TENSOR REMARK 3 T11: 0.2989 T22: 0.4381 REMARK 3 T33: 0.3001 T12: 0.0655 REMARK 3 T13: -0.0416 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 0.0348 L22: 0.0035 REMARK 3 L33: 0.0548 L12: 0.0196 REMARK 3 L13: -0.0001 L23: -0.0091 REMARK 3 S TENSOR REMARK 3 S11: -0.1844 S12: 0.2695 S13: -0.1718 REMARK 3 S21: 0.1518 S22: -0.0328 S23: 0.0639 REMARK 3 S31: -0.2720 S32: 0.0938 S33: 0.0004 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: (CHAIN E AND RESID 8:11) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2117 18.7811 42.4996 REMARK 3 T TENSOR REMARK 3 T11: 0.5880 T22: 0.6293 REMARK 3 T33: 0.5525 T12: 0.2516 REMARK 3 T13: 0.3491 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 0.1267 L22: 0.3246 REMARK 3 L33: 0.1734 L12: -0.0158 REMARK 3 L13: 0.1335 L23: -0.1159 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: 0.0225 S13: -0.0295 REMARK 3 S21: 0.2234 S22: -0.0401 S23: 0.1128 REMARK 3 S31: -0.0680 S32: -0.5102 S33: -0.1873 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: (CHAIN E AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7851 33.8808 36.2469 REMARK 3 T TENSOR REMARK 3 T11: 0.6369 T22: 0.6525 REMARK 3 T33: 0.5758 T12: 0.2462 REMARK 3 T13: 0.0071 T23: 0.0843 REMARK 3 L TENSOR REMARK 3 L11: 0.0313 L22: 0.0391 REMARK 3 L33: 0.0028 L12: 0.0170 REMARK 3 L13: -0.0083 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: 0.3466 S13: 0.1460 REMARK 3 S21: 0.3483 S22: 0.0092 S23: 0.0268 REMARK 3 S31: -0.3392 S32: 0.2931 S33: 0.0004 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: (CHAIN F AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1246 30.9666 36.5066 REMARK 3 T TENSOR REMARK 3 T11: 0.4750 T22: 0.4832 REMARK 3 T33: 0.9172 T12: 0.0682 REMARK 3 T13: 0.0918 T23: -0.1314 REMARK 3 L TENSOR REMARK 3 L11: 0.0357 L22: 0.0077 REMARK 3 L33: 0.0106 L12: -0.0114 REMARK 3 L13: 0.0096 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: 0.0227 S13: -0.2242 REMARK 3 S21: 0.1985 S22: -0.1901 S23: 0.0066 REMARK 3 S31: 0.1907 S32: -0.2274 S33: -0.0004 REMARK 3 TLS GROUP : 32 REMARK 3 SELECTION: (CHAIN F AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4773 24.8650 34.5979 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.4369 REMARK 3 T33: 0.3642 T12: 0.1583 REMARK 3 T13: -0.0221 T23: -0.0855 REMARK 3 L TENSOR REMARK 3 L11: 0.0278 L22: 0.0468 REMARK 3 L33: 0.0305 L12: 0.0187 REMARK 3 L13: -0.0292 L23: -0.0294 REMARK 3 S TENSOR REMARK 3 S11: -0.2376 S12: 0.1416 S13: 0.1012 REMARK 3 S21: 0.3150 S22: 0.1277 S23: 0.0693 REMARK 3 S31: -0.2533 S32: 0.0328 S33: -0.0001 REMARK 3 TLS GROUP : 33 REMARK 3 SELECTION: (CHAIN F AND RESID 9:15) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4752 8.4746 41.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.5864 T22: 0.5925 REMARK 3 T33: 0.5414 T12: 0.1234 REMARK 3 T13: -0.0436 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.5212 L22: 1.4442 REMARK 3 L33: 0.7864 L12: -1.1208 REMARK 3 L13: -1.0421 L23: 0.9091 REMARK 3 S TENSOR REMARK 3 S11: -0.3936 S12: 0.2932 S13: -0.4005 REMARK 3 S21: 0.4314 S22: -0.1524 S23: 0.1507 REMARK 3 S31: -0.3070 S32: -0.3038 S33: -0.0906 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER REMARK 200 OPTICS : HELIOS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.088 REMARK 200 RESOLUTION RANGE LOW (A) : 19.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.720 REMARK 200 R MERGE (I) : 0.07910 REMARK 200 R SYM (I) : 0.04990 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.28 REMARK 200 R MERGE FOR SHELL (I) : 0.50320 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM BIS-TRIS PROPANE, 10MM NICL2, 4 REMARK 280 -6% 2-METHYL-2,4-PENTANEDIOL, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.84800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.84800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO PROTEIN:DNA COMPLEXES IN THE A.U. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 MET D 0 REMARK 465 ARG D 1 REMARK 465 LYS D 2 REMARK 465 ARG D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CD CE NZ REMARK 470 LYS D 57 CD CE NZ REMARK 470 LYS D 58 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR D 11 O HOH D 101 1.26 REMARK 500 HZ3 LYS A 55 O HOH A 202 1.52 REMARK 500 HE21 GLN D 6 O HOH D 106 1.53 REMARK 500 HH12 ARG A 43 OP2 DT C 7 1.54 REMARK 500 O HOH A 213 O HOH D 141 1.83 REMARK 500 OP2 DT F 3 O HOH F 201 1.86 REMARK 500 OH TYR D 11 O HOH D 101 1.87 REMARK 500 OE1 GLU D 42 O HOH D 102 1.87 REMARK 500 O HOH A 232 O HOH A 236 1.92 REMARK 500 O HOH B 217 O HOH C 124 1.94 REMARK 500 O HOH D 141 O HOH D 148 1.95 REMARK 500 O HOH A 242 O HOH A 247 1.96 REMARK 500 O HOH E 202 O HOH E 226 1.96 REMARK 500 OE1 GLU A 17 O HOH A 201 1.99 REMARK 500 O HOH D 141 O HOH D 151 2.01 REMARK 500 OE1 GLU D 17 O HOH D 103 2.03 REMARK 500 O HOH D 110 O HOH D 144 2.10 REMARK 500 O HOH A 223 O HOH B 220 2.10 REMARK 500 O HOH F 222 O HOH F 226 2.11 REMARK 500 OE1 GLU D 59 O HOH D 104 2.12 REMARK 500 O HOH A 234 O HOH D 145 2.13 REMARK 500 O HOH B 204 O HOH B 224 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 1 O3' DG B 1 C3' -0.050 REMARK 500 DG B 12 O3' DG B 12 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA E 5 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA E 12 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT F 5 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 21 NE2 REMARK 620 2 HIS D 21 NE2 93.0 REMARK 620 3 HOH A 206 O 81.3 85.4 REMARK 620 4 ASN D 60 ND2 155.8 65.3 86.2 REMARK 620 5 HOH D 114 O 93.0 88.2 171.2 96.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 102 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 12 N7 REMARK 620 2 HOH B 207 O 65.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI E 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 2 N7 REMARK 620 2 HOH E 205 O 88.2 REMARK 620 3 HOH E 218 O 76.8 164.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD F 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD F 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DC E 7 and C7R E REMARK 800 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide C7R E 8 and DA E REMARK 800 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JLX RELATED DB: PDB DBREF 5JLW A 1 60 UNP P02833 ANTP_DROME 297 356 DBREF 5JLW B 0 14 PDB 5JLW 5JLW 0 14 DBREF 5JLW C 0 14 PDB 5JLW 5JLW 0 14 DBREF 5JLW D 1 60 UNP P02833 ANTP_DROME 297 356 DBREF 5JLW E 1 15 PDB 5JLW 5JLW 1 15 DBREF 5JLW F 1 15 PDB 5JLW 5JLW 1 15 SEQADV 5JLW MET A 0 UNP P02833 EXPRESSION TAG SEQADV 5JLW SER A 39 UNP P02833 CYS 335 ENGINEERED MUTATION SEQADV 5JLW MET D 0 UNP P02833 EXPRESSION TAG SEQADV 5JLW SER D 39 UNP P02833 CYS 335 ENGINEERED MUTATION SEQRES 1 A 61 MET ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR GLN SEQRES 2 A 61 THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG TYR SEQRES 3 A 61 LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA LEU SEQRES 4 A 61 SER LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN ASN SEQRES 5 A 61 ARG ARG MET LYS TRP LYS LYS GLU ASN SEQRES 1 B 15 DA DG DA DA DA DG DC C7R DA DT DT DA DG SEQRES 2 B 15 DA DG SEQRES 1 C 15 DT DC DT DC DT DA DA DT DG DG DC DT DT SEQRES 2 C 15 DT DC SEQRES 1 D 61 MET ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR GLN SEQRES 2 D 61 THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG TYR SEQRES 3 D 61 LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA LEU SEQRES 4 D 61 SER LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN ASN SEQRES 5 D 61 ARG ARG MET LYS TRP LYS LYS GLU ASN SEQRES 1 E 15 DA DG DA DA DA DG DC C7R DA DT DT DA DG SEQRES 2 E 15 DA DG SEQRES 1 F 15 DT DC DT DC DT DA DA DT DG DG DC DT DT SEQRES 2 F 15 DT DC HET C7R B 7 30 HET C7R E 8 30 HET NI A 101 1 HET NI B 101 1 HET NI B 102 1 HET NI B 103 1 HET NI E 101 1 HET NI E 102 1 HET MPD F 101 22 HET MPD F 102 22 HET MPD F 103 22 HETNAM C7R 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE HETNAM NI NICKEL (II) ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN C7R 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE (THIOPHOSPHO HETSYN 2 C7R CONNECTION ISOFORM 1) FORMUL 2 C7R 2(C9 H14 N3 O6 P S) FORMUL 7 NI 6(NI 2+) FORMUL 13 MPD 3(C6 H14 O2) FORMUL 16 HOH *212(H2 O) HELIX 1 AA1 THR A 9 ASN A 23 1 15 HELIX 2 AA2 THR A 27 SER A 39 1 13 HELIX 3 AA3 THR A 41 LYS A 58 1 18 HELIX 4 AA4 THR D 9 ASN D 23 1 15 HELIX 5 AA5 THR D 27 SER D 39 1 13 HELIX 6 AA6 THR D 41 ASN D 60 1 20 LINK NE2 HIS A 21 NI NI A 101 1555 1555 2.15 LINK N7 DG B 1 NI NI B 101 1555 1555 2.54 LINK O3' DC B 6 P C7R B 7 1555 1555 1.60 LINK O3' C7R B 7 P DA B 8 1555 1555 1.61 LINK N7 DG B 12 NI NI B 102 1555 1555 2.67 LINK NE2 HIS D 21 NI NI A 101 1555 1555 2.17 LINK N7 DG E 2 NI NI E 101 1555 1555 2.35 LINK O3' DC E 7 P C7R E 8 1555 1555 1.58 LINK O3' C7R E 8 P DA E 9 1555 1555 1.60 LINK NI NI A 101 O HOH A 206 1555 1555 1.82 LINK NI NI B 102 O HOH B 207 1555 1555 2.08 LINK NI NI E 101 O HOH E 205 1555 1555 2.21 LINK NI NI E 101 O HOH E 218 1555 1555 2.20 LINK ND2 ASN D 60 NI NI A 101 1555 3555 2.40 LINK NI NI A 101 O HOH D 114 1555 3555 2.24 SITE 1 AC1 5 HIS A 21 HOH A 206 HIS D 21 ASN D 60 SITE 2 AC1 5 HOH D 114 SITE 1 AC2 2 DG B 1 HOH C 122 SITE 1 AC3 2 DG B 12 HOH B 207 SITE 1 AC4 3 DA B 3 DA B 4 DT C 13 SITE 1 AC5 3 DG E 2 HOH E 205 HOH E 218 SITE 1 AC6 1 DG E 13 SITE 1 AC7 2 DT F 13 MPD F 102 SITE 1 AC8 3 DT F 13 MPD F 101 MPD F 103 SITE 1 AC9 2 DT F 14 MPD F 102 SITE 1 AD1 8 TYR D 25 GLN D 50 ARG D 53 MET D 54 SITE 2 AD1 8 DG E 6 DA E 9 DG F 9 DG F 10 SITE 1 AD2 7 MET D 54 DC E 7 DT E 10 DA F 7 SITE 2 AD2 7 DT F 8 DG F 9 DG F 10 CRYST1 61.266 75.888 93.696 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016322 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010673 0.00000