PDB Short entry for 5JOL HEADER METAL BINDING PROTEIN 02-MAY-16 5JOL TITLE CALCIUM-FREE EF-HAND DOMAIN OF L-PLASTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EF-HAND DOMAIN (UNP RESIDUES 1-82); COMPND 5 SYNONYM: L-PLASTIN,LC64P,LYMPHOCYTE CYTOSOLIC PROTEIN 1,LCP-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCP1, PLS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM-BINDING, EF-HAND, L-PLASTIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.ISHIDA,K.V.JENSEN,A.G.WOODMAN,M.E.HYNDMAN,H.J.VOGEL REVDAT 2 14-JUN-23 5JOL 1 REMARK REVDAT 1 19-APR-17 5JOL 0 JRNL AUTH H.ISHIDA,K.V.JENSEN,A.G.WOODMAN,M.E.HYNDMAN,H.J.VOGEL JRNL TITL THE CALCIUM-DEPENDENT SWITCH HELIX OF L-PLASTIN REGULATES JRNL TITL 2 ACTIN BUNDLING. JRNL REF SCI REP V. 7 40662 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28145401 JRNL DOI 10.1038/SREP40662 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220859. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 25 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 15N] EF-HAND DOMAIN REMARK 210 OF L-PLASTIN, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-99% 13C; U-98% 15N] EF- REMARK 210 HAND DOMAIN OF L-PLASTIN, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-99% 13C; REMARK 210 U-98% 15N] EF-HAND DOMAIN OF L- REMARK 210 PLASTIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 144.73 -174.70 REMARK 500 1 SER A 5 -56.79 -141.49 REMARK 500 1 ASP A 22 48.83 -106.28 REMARK 500 1 PRO A 46 -166.63 -69.81 REMARK 500 1 ASP A 66 -29.71 -178.92 REMARK 500 1 ARG A 68 -168.78 -74.78 REMARK 500 2 PRO A 46 -169.57 -69.81 REMARK 500 2 ASP A 66 -27.90 -178.10 REMARK 500 3 SER A 5 -175.98 -174.69 REMARK 500 3 ASP A 22 46.88 -107.55 REMARK 500 3 PRO A 46 -169.69 -69.75 REMARK 500 3 ASP A 66 -32.76 -171.05 REMARK 500 4 ASP A 22 46.59 -109.48 REMARK 500 4 PRO A 46 -168.48 -69.76 REMARK 500 5 ARG A 3 136.59 -174.44 REMARK 500 5 PRO A 46 -168.95 -69.83 REMARK 500 5 ASP A 66 -26.95 -177.22 REMARK 500 6 ARG A 3 -74.87 -102.62 REMARK 500 6 ASP A 22 49.08 -106.44 REMARK 500 6 PRO A 46 -168.59 -69.85 REMARK 500 6 ASP A 66 -29.33 -176.65 REMARK 500 7 ALA A 2 -75.05 -106.13 REMARK 500 7 ARG A 3 74.34 55.56 REMARK 500 7 SER A 5 -176.09 -177.45 REMARK 500 7 ASP A 22 50.70 -105.30 REMARK 500 7 PRO A 46 -169.54 -69.84 REMARK 500 7 ARG A 68 -167.62 -123.41 REMARK 500 8 SER A 5 -66.74 -134.06 REMARK 500 8 SER A 7 153.93 -49.26 REMARK 500 8 PRO A 46 -167.72 -69.79 REMARK 500 8 ASP A 66 -28.59 -179.79 REMARK 500 8 ARG A 68 -169.83 -72.13 REMARK 500 9 SER A 5 -57.38 -130.19 REMARK 500 9 PRO A 46 -169.72 -69.85 REMARK 500 9 LEU A 63 31.73 -95.89 REMARK 500 9 ASP A 66 -28.47 -179.77 REMARK 500 9 ARG A 68 -168.70 -79.46 REMARK 500 10 ARG A 3 -73.74 -74.69 REMARK 500 10 SER A 5 -53.87 -126.24 REMARK 500 10 ASP A 22 50.11 -105.64 REMARK 500 10 PRO A 46 -168.36 -69.78 REMARK 500 10 ASP A 66 -39.87 -152.89 REMARK 500 11 ARG A 3 -62.01 -108.82 REMARK 500 11 ASP A 22 46.01 -103.24 REMARK 500 11 PRO A 46 -169.45 -69.67 REMARK 500 11 ASP A 66 -32.43 -168.45 REMARK 500 12 SER A 5 -46.06 -146.80 REMARK 500 12 ASP A 22 50.82 -105.29 REMARK 500 12 PRO A 46 -167.89 -69.65 REMARK 500 12 ASP A 66 -39.28 -153.26 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30072 RELATED DB: BMRB REMARK 900 RELATED ID: 5JOJ RELATED DB: PDB DBREF 5JOL A 1 82 UNP P13796 PLSL_HUMAN 1 82 SEQRES 1 A 82 MET ALA ARG GLY SER VAL SER ASP GLU GLU MET MET GLU SEQRES 2 A 82 LEU ARG GLU ALA PHE ALA LYS VAL ASP THR ASP GLY ASN SEQRES 3 A 82 GLY TYR ILE SER PHE ASN GLU LEU ASN ASP LEU PHE LYS SEQRES 4 A 82 ALA ALA CYS LEU PRO LEU PRO GLY TYR ARG VAL ARG GLU SEQRES 5 A 82 ILE THR GLU ASN LEU MET ALA THR GLY ASP LEU ASP GLN SEQRES 6 A 82 ASP GLY ARG ILE SER PHE ASP GLU PHE ILE LYS ILE PHE SEQRES 7 A 82 HIS GLY LEU LYS HELIX 1 AA1 SER A 7 ASP A 22 1 16 HELIX 2 AA2 SER A 30 ALA A 41 1 12 HELIX 3 AA3 PRO A 46 MET A 58 1 13 HELIX 4 AA4 PHE A 71 GLY A 80 1 10 SHEET 1 AA1 2 TYR A 28 ILE A 29 0 SHEET 2 AA1 2 ILE A 69 SER A 70 -1 O ILE A 69 N ILE A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000