PDB Short entry for 5JS6 HEADER OXIDOREDUCTASE 07-MAY-16 5JS6 TITLE CRYSTAL STRUCTURE OF 17BETA-HYDROXYSTEROID DEHYDROGENASE 14 T205 TITLE 2 VARIANT IN COMPLEX WITH NAD. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 17-BETA-HYDROXYSTEROID DEHYDROGENASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 17-BETA-HSD 14,17-BETA-HYDROXYSTEROID DEHYDROGENASE DHRS10, COMPND 5 DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 10,RETINAL SHORT-CHAIN COMPND 6 DEHYDROGENASE/REDUCTASE RETSDR3,SHORT CHAIN DEHYDROGENASE/REDUCTASE COMPND 7 FAMILY 47C MEMBER 1; COMPND 8 EC: 1.1.1.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSD17B14, DHRS10, SDR3, SDR47C1, UNQ502/PRO474; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS COFACTOR COMPLEX, HYDROXYSTEROID DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.BERTOLETTI,S.MARCHAIS-OBERWINKLER,A.HEINE,G.KLEBE REVDAT 4 10-JAN-24 5JS6 1 REMARK REVDAT 3 06-SEP-17 5JS6 1 REMARK REVDAT 2 10-AUG-16 5JS6 1 JRNL REVDAT 1 13-JUL-16 5JS6 0 JRNL AUTH N.BERTOLETTI,F.BRAUN,M.LEPAGE,G.MOLLER,J.ADAMSKI,A.HEINE, JRNL AUTH 2 G.KLEBE,S.MARCHAIS-OBERWINKLER JRNL TITL NEW INSIGHTS INTO HUMAN 17 BETA-HYDROXYSTEROID DEHYDROGENASE JRNL TITL 2 TYPE 14: FIRST CRYSTAL STRUCTURES IN COMPLEX WITH A JRNL TITL 3 STEROIDAL LIGAND AND WITH A POTENT NONSTEROIDAL INHIBITOR. JRNL REF J.MED.CHEM. V. 59 6961 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27362750 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00293 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0469 - 4.1634 0.99 2688 142 0.1438 0.1656 REMARK 3 2 4.1634 - 3.3049 1.00 2644 139 0.1520 0.1631 REMARK 3 3 3.3049 - 2.8872 0.99 2587 136 0.1754 0.1990 REMARK 3 4 2.8872 - 2.6233 1.00 2619 138 0.1766 0.2072 REMARK 3 5 2.6233 - 2.4352 0.99 2619 138 0.1888 0.2304 REMARK 3 6 2.4352 - 2.2917 1.00 2581 136 0.2021 0.2429 REMARK 3 7 2.2917 - 2.1769 1.00 2612 137 0.2112 0.2613 REMARK 3 8 2.1769 - 2.0821 1.00 2598 137 0.2141 0.2581 REMARK 3 9 2.0821 - 2.0020 0.98 2546 134 0.2766 0.3213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2036 REMARK 3 ANGLE : 0.817 2777 REMARK 3 CHIRALITY : 0.053 325 REMARK 3 PLANARITY : 0.005 382 REMARK 3 DIHEDRAL : 19.461 1230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6555 3.7337 47.9463 REMARK 3 T TENSOR REMARK 3 T11: 0.3889 T22: 0.5293 REMARK 3 T33: 0.9637 T12: -0.0423 REMARK 3 T13: 0.1911 T23: 0.2136 REMARK 3 L TENSOR REMARK 3 L11: 4.1942 L22: 0.7341 REMARK 3 L33: 2.4369 L12: 0.0075 REMARK 3 L13: -0.4210 L23: 1.3241 REMARK 3 S TENSOR REMARK 3 S11: -0.1750 S12: 0.2412 S13: 0.1334 REMARK 3 S21: -0.0772 S22: -0.1429 S23: -0.5508 REMARK 3 S31: -0.3182 S32: 0.6956 S33: 0.2265 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0126 1.6258 41.3164 REMARK 3 T TENSOR REMARK 3 T11: 0.4572 T22: 0.4251 REMARK 3 T33: 0.7818 T12: -0.0009 REMARK 3 T13: 0.1878 T23: 0.1532 REMARK 3 L TENSOR REMARK 3 L11: 2.9391 L22: 1.3910 REMARK 3 L33: 1.5346 L12: 0.1374 REMARK 3 L13: -0.1398 L23: -0.4102 REMARK 3 S TENSOR REMARK 3 S11: -0.2878 S12: 0.5715 S13: 0.0450 REMARK 3 S21: -0.4550 S22: -0.1521 S23: -0.5734 REMARK 3 S31: 0.0404 S32: 0.3371 S33: 0.3344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9743 -3.9763 42.2779 REMARK 3 T TENSOR REMARK 3 T11: 0.3869 T22: 0.3454 REMARK 3 T33: 0.6873 T12: -0.0227 REMARK 3 T13: 0.1379 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 6.6103 L22: 5.1078 REMARK 3 L33: 2.5084 L12: -5.0340 REMARK 3 L13: 2.5885 L23: -1.9331 REMARK 3 S TENSOR REMARK 3 S11: -0.1572 S12: 0.6828 S13: -0.1025 REMARK 3 S21: -0.4404 S22: -0.3274 S23: -0.5120 REMARK 3 S31: 0.0480 S32: 0.3747 S33: 0.4634 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9087 3.6182 54.0253 REMARK 3 T TENSOR REMARK 3 T11: 0.2920 T22: 0.2949 REMARK 3 T33: 0.6670 T12: -0.0395 REMARK 3 T13: 0.0326 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 2.6558 L22: 2.7016 REMARK 3 L33: 2.3615 L12: 0.3732 REMARK 3 L13: -0.1011 L23: 1.0971 REMARK 3 S TENSOR REMARK 3 S11: -0.3454 S12: 0.1411 S13: 0.2126 REMARK 3 S21: -0.3440 S22: -0.0075 S23: -0.2567 REMARK 3 S31: -0.0686 S32: 0.1024 S33: 0.3282 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3155 4.6090 52.0110 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.3542 REMARK 3 T33: 0.6911 T12: -0.0087 REMARK 3 T13: 0.0324 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 1.0436 L22: 3.0894 REMARK 3 L33: 1.4623 L12: -0.0516 REMARK 3 L13: 0.1976 L23: -0.4792 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: 0.0971 S13: -0.1318 REMARK 3 S21: -0.2703 S22: -0.1973 S23: -0.2647 REMARK 3 S31: -0.0317 S32: 0.0774 S33: 0.3205 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0532 9.5034 61.1385 REMARK 3 T TENSOR REMARK 3 T11: 0.3020 T22: 0.3544 REMARK 3 T33: 0.8216 T12: -0.0405 REMARK 3 T13: -0.0706 T23: 0.1145 REMARK 3 L TENSOR REMARK 3 L11: 0.2489 L22: 2.9435 REMARK 3 L33: 1.3152 L12: -0.3078 REMARK 3 L13: -0.5394 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: -0.0732 S13: -0.0754 REMARK 3 S21: -0.0831 S22: -0.1707 S23: -0.5286 REMARK 3 S31: -0.1669 S32: 0.2458 S33: 0.2764 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4413 22.0327 65.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.5869 T22: 0.5048 REMARK 3 T33: 0.8887 T12: -0.0050 REMARK 3 T13: -0.1013 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 4.0200 L22: 4.5293 REMARK 3 L33: 3.3079 L12: -0.1572 REMARK 3 L13: -2.9261 L23: -0.0539 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: 0.4514 S13: 0.7253 REMARK 3 S21: -0.0937 S22: 0.0566 S23: 0.5316 REMARK 3 S31: -0.7210 S32: -0.5492 S33: -0.1093 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.620 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.52 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EN4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES 0.1 M PH 7.00, SODIUM FORMATE REMARK 280 3.3 M, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.10300 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 65.10300 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 65.10300 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 65.10300 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 65.10300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 65.10300 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 65.10300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.10300 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 65.10300 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 65.10300 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 65.10300 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 65.10300 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 65.10300 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 65.10300 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 65.10300 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 65.10300 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 65.10300 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 65.10300 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 65.10300 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 65.10300 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 65.10300 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 65.10300 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 65.10300 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 65.10300 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 65.10300 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 65.10300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 130.20600 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 130.20600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 PG4 A 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 SER A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 NZ REMARK 470 LYS A 41 CD CE NZ REMARK 470 GLN A 51 CG CD OE1 NE2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 LYS A 70 CE NZ REMARK 470 SER A 74 OG REMARK 470 ARG A 98 NE CZ NH1 NH2 REMARK 470 GLN A 105 CD OE1 NE2 REMARK 470 LYS A 131 CD CE NZ REMARK 470 ARG A 259 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 PG4 A 303 C3 PG4 A 303 4556 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 140 -130.62 -91.09 REMARK 500 ALA A 151 41.71 -155.55 REMARK 500 ALA A 235 55.04 -105.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 303 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EN4 RELATED DB: PDB DBREF 5JS6 A 1 270 UNP Q9BPX1 DHB14_HUMAN 1 270 SEQADV 5JS6 GLY A -1 UNP Q9BPX1 EXPRESSION TAG SEQADV 5JS6 HIS A 0 UNP Q9BPX1 EXPRESSION TAG SEQADV 5JS6 GLY A 271 UNP Q9BPX1 EXPRESSION TAG SEQADV 5JS6 SER A 272 UNP Q9BPX1 EXPRESSION TAG SEQRES 1 A 274 GLY HIS MET ALA THR GLY THR ARG TYR ALA GLY LYS VAL SEQRES 2 A 274 VAL VAL VAL THR GLY GLY GLY ARG GLY ILE GLY ALA GLY SEQRES 3 A 274 ILE VAL ARG ALA PHE VAL ASN SER GLY ALA ARG VAL VAL SEQRES 4 A 274 ILE CYS ASP LYS ASP GLU SER GLY GLY ARG ALA LEU GLU SEQRES 5 A 274 GLN GLU LEU PRO GLY ALA VAL PHE ILE LEU CYS ASP VAL SEQRES 6 A 274 THR GLN GLU ASP ASP VAL LYS THR LEU VAL SER GLU THR SEQRES 7 A 274 ILE ARG ARG PHE GLY ARG LEU ASP CYS VAL VAL ASN ASN SEQRES 8 A 274 ALA GLY HIS HIS PRO PRO PRO GLN ARG PRO GLU GLU THR SEQRES 9 A 274 SER ALA GLN GLY PHE ARG GLN LEU LEU GLU LEU ASN LEU SEQRES 10 A 274 LEU GLY THR TYR THR LEU THR LYS LEU ALA LEU PRO TYR SEQRES 11 A 274 LEU ARG LYS SER GLN GLY ASN VAL ILE ASN ILE SER SER SEQRES 12 A 274 LEU VAL GLY ALA ILE GLY GLN ALA GLN ALA VAL PRO TYR SEQRES 13 A 274 VAL ALA THR LYS GLY ALA VAL THR ALA MET THR LYS ALA SEQRES 14 A 274 LEU ALA LEU ASP GLU SER PRO TYR GLY VAL ARG VAL ASN SEQRES 15 A 274 CYS ILE SER PRO GLY ASN ILE TRP THR PRO LEU TRP GLU SEQRES 16 A 274 GLU LEU ALA ALA LEU MET PRO ASP PRO ARG ALA THR ILE SEQRES 17 A 274 ARG GLU GLY MET LEU ALA GLN PRO LEU GLY ARG MET GLY SEQRES 18 A 274 GLN PRO ALA GLU VAL GLY ALA ALA ALA VAL PHE LEU ALA SEQRES 19 A 274 SER GLU ALA ASN PHE CYS THR GLY ILE GLU LEU LEU VAL SEQRES 20 A 274 THR GLY GLY ALA GLU LEU GLY TYR GLY CYS LYS ALA SER SEQRES 21 A 274 ARG SER THR PRO VAL ASP ALA PRO ASP ILE PRO SER GLY SEQRES 22 A 274 SER HET NAD A 301 44 HET CL A 302 1 HET PG4 A 303 7 HET PGE A 304 10 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 CL CL 1- FORMUL 4 PG4 C8 H18 O5 FORMUL 5 PGE C6 H14 O4 FORMUL 6 HOH *64(H2 O) HELIX 1 AA1 ARG A 19 SER A 32 1 14 HELIX 2 AA2 ASP A 42 LEU A 53 1 12 HELIX 3 AA3 GLN A 65 GLY A 81 1 17 HELIX 4 AA4 ARG A 98 THR A 102 5 5 HELIX 5 AA5 SER A 103 LEU A 115 1 13 HELIX 6 AA6 LEU A 115 GLN A 133 1 19 HELIX 7 AA7 SER A 141 GLY A 147 1 7 HELIX 8 AA8 ALA A 151 SER A 173 1 23 HELIX 9 AA9 PRO A 174 GLY A 176 5 3 HELIX 10 AB1 THR A 189 ALA A 197 1 9 HELIX 11 AB2 ASP A 201 ALA A 212 1 12 HELIX 12 AB3 GLN A 220 GLU A 234 1 15 SHEET 1 AA1 7 ALA A 56 LEU A 60 0 SHEET 2 AA1 7 ARG A 35 ASP A 40 1 N ILE A 38 O VAL A 57 SHEET 3 AA1 7 VAL A 11 THR A 15 1 N VAL A 12 O VAL A 37 SHEET 4 AA1 7 CYS A 85 ASN A 88 1 O VAL A 87 N VAL A 13 SHEET 5 AA1 7 ASN A 135 ILE A 139 1 O ILE A 137 N VAL A 86 SHEET 6 AA1 7 ARG A 178 PRO A 184 1 O ASN A 180 N VAL A 136 SHEET 7 AA1 7 GLU A 242 VAL A 245 1 O LEU A 243 N CYS A 181 SSBOND 1 CYS A 255 CYS A 255 1555 3556 2.05 SITE 1 AC1 26 GLY A 16 ARG A 19 GLY A 20 ILE A 21 SITE 2 AC1 26 ASP A 40 LYS A 41 CYS A 61 ASP A 62 SITE 3 AC1 26 VAL A 63 ASN A 89 GLY A 91 LEU A 113 SITE 4 AC1 26 ILE A 139 SER A 140 SER A 141 TYR A 154 SITE 5 AC1 26 LYS A 158 PRO A 184 GLY A 185 ILE A 187 SITE 6 AC1 26 THR A 189 LEU A 191 TRP A 192 HOH A 423 SITE 7 AC1 26 HOH A 424 HOH A 428 SITE 1 AC2 2 ALA A 149 TYR A 253 SITE 1 AC3 4 ARG A 82 ARG A 203 ILE A 206 ASP A 267 CRYST1 130.206 130.206 130.206 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007680 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007680 0.00000