PDB Short entry for 5JVO HEADER DNA BINDING PROTEIN 11-MAY-16 5JVO TITLE CRYSTAL STRUCTURE OF THE ARGININE REPRESSOR FROM THE PATHOGENIC TITLE 2 BACTERIUM CORYNEBACTERIUM PSEUDOTUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE REPRESSOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1719; SOURCE 4 GENE: ARGR, CPE19_0967; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARGININE REPRESSOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.B.MARIUTTI,A.ULLAH,M.T.MURAKAMI,R.K.ARNI REVDAT 2 27-SEP-23 5JVO 1 JRNL REMARK REVDAT 1 31-AUG-16 5JVO 0 JRNL AUTH R.B.MARIUTTI,A.ULLAH,G.C.ARAUJO,M.T.MURAKAMI,R.K.ARNI JRNL TITL TYROSINE BINDING AND PROMISCUITY IN THE ARGININE REPRESSOR JRNL TITL 2 FROM THE PATHOGENIC BACTERIUM CORYNEBACTERIUM JRNL TITL 3 PSEUDOTUBERCULOSIS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 475 350 2016 JRNL REFN ESSN 1090-2104 JRNL PMID 27233609 JRNL DOI 10.1016/J.BBRC.2016.05.091 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1048 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.119 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1204 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1179 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1623 ; 2.372 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2706 ; 1.157 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 151 ; 6.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;39.339 ;23.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 205 ;17.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1337 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 259 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 616 ; 2.414 ; 2.670 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 615 ; 2.415 ; 2.671 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 763 ; 3.347 ; 3.978 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 41.3985 12.3230 89.7505 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: 0.0367 REMARK 3 T33: 0.0254 T12: -0.0146 REMARK 3 T13: -0.0157 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.7724 L22: 0.0911 REMARK 3 L33: 0.7077 L12: 0.1296 REMARK 3 L13: 0.4374 L23: 0.2487 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.0694 S13: 0.0704 REMARK 3 S21: -0.0069 S22: 0.0000 S23: -0.0023 REMARK 3 S31: -0.0429 S32: 0.0040 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3979 25.0459 75.7758 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.0412 REMARK 3 T33: 0.0165 T12: 0.0168 REMARK 3 T13: 0.0011 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.7122 L22: 1.0244 REMARK 3 L33: 0.3200 L12: -0.7227 REMARK 3 L13: 0.1919 L23: -0.5014 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: -0.0709 S13: 0.0898 REMARK 3 S21: 0.1893 S22: 0.0638 S23: -0.0669 REMARK 3 S31: -0.1103 S32: -0.0725 S33: 0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ERE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL 200 MM NACL 10% REMARK 280 ETHANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.59550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.59550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.59550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.59550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 41.59550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 41.59550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 41.59550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 41.59550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 41.59550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 41.59550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 41.59550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 41.59550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 41.59550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -41.59550 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 41.59550 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 83.19100 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 41.59550 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 83.19100 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 41.59550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 319 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 313 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 315 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 161 REMARK 465 GLY A 162 REMARK 465 ASN A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 GLU A 166 REMARK 465 ASN A 167 REMARK 465 LEU A 168 REMARK 465 TYR A 169 REMARK 465 PHE A 170 REMARK 465 GLN A 171 REMARK 465 GLY A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 GLY B 82 REMARK 465 THR B 83 REMARK 465 ARG B 84 REMARK 465 GLU B 85 REMARK 465 ARG B 160 REMARK 465 SER B 161 REMARK 465 GLY B 162 REMARK 465 ASN B 163 REMARK 465 GLY B 164 REMARK 465 GLY B 165 REMARK 465 GLU B 166 REMARK 465 ASN B 167 REMARK 465 LEU B 168 REMARK 465 TYR B 169 REMARK 465 PHE B 170 REMARK 465 GLN B 171 REMARK 465 GLY B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 119 NH1 ARG A 123 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 154 CD GLU A 154 OE1 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ILE A 133 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP A 137 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP B 137 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 118.21 -161.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYR B 201 DBREF1 5JVO A 82 163 UNP A0A0E3UAP8_CORPS DBREF2 5JVO A A0A0E3UAP8 82 163 DBREF1 5JVO B 82 163 UNP A0A0E3UAP8_CORPS DBREF2 5JVO B A0A0E3UAP8 82 163 SEQADV 5JVO GLY A 164 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLY A 165 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLU A 166 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO ASN A 167 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO LEU A 168 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO TYR A 169 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO PHE A 170 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLN A 171 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLY A 172 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS A 173 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS A 174 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS A 175 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS A 176 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS A 177 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS A 178 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLY B 164 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLY B 165 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLU B 166 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO ASN B 167 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO LEU B 168 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO TYR B 169 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO PHE B 170 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLN B 171 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO GLY B 172 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS B 173 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS B 174 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS B 175 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS B 176 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS B 177 UNP A0A0E3UAP EXPRESSION TAG SEQADV 5JVO HIS B 178 UNP A0A0E3UAP EXPRESSION TAG SEQRES 1 A 97 GLY THR ARG GLU LYS LEU ARG LYS MET LEU ASP ASP LEU SEQRES 2 A 97 LEU VAL SER VAL ASP HIS SER GLY ASN ILE ALA VAL LEU SEQRES 3 A 97 ARG THR PRO PRO GLY GLY ALA PRO PHE LEU ALA SER PHE SEQRES 4 A 97 ILE ASP ARG VAL GLY MET GLU GLU VAL VAL GLY THR ILE SEQRES 5 A 97 ALA GLY ASP ASP THR VAL PHE VAL LEU ALA ARG ASP PRO SEQRES 6 A 97 MET THR GLY GLN GLU LEU GLY GLU PHE LEU SER GLN ARG SEQRES 7 A 97 ARG SER GLY ASN GLY GLY GLU ASN LEU TYR PHE GLN GLY SEQRES 8 A 97 HIS HIS HIS HIS HIS HIS SEQRES 1 B 97 GLY THR ARG GLU LYS LEU ARG LYS MET LEU ASP ASP LEU SEQRES 2 B 97 LEU VAL SER VAL ASP HIS SER GLY ASN ILE ALA VAL LEU SEQRES 3 B 97 ARG THR PRO PRO GLY GLY ALA PRO PHE LEU ALA SER PHE SEQRES 4 B 97 ILE ASP ARG VAL GLY MET GLU GLU VAL VAL GLY THR ILE SEQRES 5 B 97 ALA GLY ASP ASP THR VAL PHE VAL LEU ALA ARG ASP PRO SEQRES 6 B 97 MET THR GLY GLN GLU LEU GLY GLU PHE LEU SER GLN ARG SEQRES 7 B 97 ARG SER GLY ASN GLY GLY GLU ASN LEU TYR PHE GLN GLY SEQRES 8 B 97 HIS HIS HIS HIS HIS HIS HET TYR A 201 13 HET SO4 A 202 5 HET TYR B 201 13 HETNAM TYR TYROSINE HETNAM SO4 SULFATE ION FORMUL 3 TYR 2(C9 H11 N O3) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *46(H2 O) HELIX 1 AA1 GLY A 82 LEU A 95 1 14 HELIX 2 AA2 GLY A 113 GLY A 125 1 13 HELIX 3 AA3 THR A 148 ARG A 160 1 13 HELIX 4 AA4 LEU B 87 LEU B 95 1 9 HELIX 5 AA5 GLY B 113 GLY B 125 1 13 HELIX 6 AA6 THR B 148 ARG B 159 1 12 SHEET 1 AA1 4 SER A 97 SER A 101 0 SHEET 2 AA1 4 ILE A 104 ARG A 108 -1 O ARG A 108 N SER A 97 SHEET 3 AA1 4 THR A 138 ALA A 143 -1 O VAL A 141 N ALA A 105 SHEET 4 AA1 4 VAL A 129 ALA A 134 -1 N VAL A 130 O LEU A 142 SHEET 1 AA2 4 SER B 97 SER B 101 0 SHEET 2 AA2 4 ILE B 104 ARG B 108 -1 O VAL B 106 N ASP B 99 SHEET 3 AA2 4 THR B 138 ALA B 143 -1 O VAL B 141 N ALA B 105 SHEET 4 AA2 4 VAL B 129 ALA B 134 -1 N VAL B 130 O LEU B 142 CISPEP 1 ASP A 145 PRO A 146 0 9.71 CISPEP 2 ASP B 145 PRO B 146 0 9.70 SITE 1 AC1 13 PRO A 115 ALA A 118 ASP A 122 THR A 132 SITE 2 AC1 13 ILE A 133 ALA A 134 GLY A 135 ASP A 136 SITE 3 AC1 13 ASP A 137 THR A 138 HOH A 304 ASP B 136 SITE 4 AC1 13 TYR B 201 SITE 1 AC2 5 GLY A 82 THR A 83 ARG A 84 HOH A 316 SITE 2 AC2 5 HOH A 321 SITE 1 AC3 13 ASP A 136 TYR A 201 ALA B 118 SER B 119 SITE 2 AC3 13 ASP B 122 THR B 132 ILE B 133 ALA B 134 SITE 3 AC3 13 GLY B 135 ASP B 136 ASP B 137 THR B 138 SITE 4 AC3 13 HOH B 305 CRYST1 83.191 83.191 83.191 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012021 0.00000