PDB Short entry for 5K23 HEADER HYDROLASE/TRANSPORTER PROTEIN/PROTEIN BI18-MAY-16 5K23 TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN PHOSPHATASE PRL-2 IN TITLE 2 THE OXIDIZED STATE WITH THE BATEMAN DOMAIN OF HUMAN MAGNESIUM TITLE 3 TRANSPORTER CNNM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE TYPE IVA 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HU-PP-1,OV-1,PTP(CAAXII),PROTEIN-TYROSINE PHOSPHATASE 4A2, COMPND 5 PROTEIN-TYROSINE PHOSPHATASE OF REGENERATING LIVER 2,PRL-2; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: METAL TRANSPORTER CNNM3; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: ANCIENT CONSERVED DOMAIN-CONTAINING PROTEIN 3,CYCLIN-M3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTP4A2, PRL2, PTPCAAX2, BM-008; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PDEST17; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CNNM3, ACDP3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PDEST15 KEYWDS COMPLEX, PHOSPHATASE, MAGNESIUM TRANSPORTER, PROTEIN BINDING, KEYWDS 2 HYDROLASE, HYDROLASE-TRANSPORTER PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.GULEREZ,G.KOZLOV,K.GEHRING REVDAT 3 27-SEP-23 5K23 1 REMARK REVDAT 2 03-OCT-18 5K23 1 JRNL REMARK REVDAT 1 12-OCT-16 5K23 0 JRNL AUTH H.ZHANG,G.KOZLOV,X.LI,H.WU,I.GULEREZ,K.GEHRING JRNL TITL PRL3 PHOSPHATASE ACTIVE SITE IS REQUIRED FOR BINDING THE JRNL TITL 2 PUTATIVE MAGNESIUM TRANSPORTER CNNM3. JRNL REF SCI REP V. 7 48 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28246390 JRNL DOI 10.1038/S41598-017-00147-2 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 528 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2401 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.380 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.325 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2443 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3323 ; 1.875 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 8.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;41.404 ;24.071 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;24.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;23.119 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1853 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5K23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9759 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.54M SODIUM CITRATE, 0.1M SODIUM REMARK 280 ACETATE, 10MM YTTRIUM CHLORIDE, PH 5.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.57800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.24500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.52400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.57800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.24500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.52400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.57800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.24500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.52400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.57800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.24500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.52400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 SER A -20 REMARK 465 TYR A -19 REMARK 465 TYR A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 PHE A 0 REMARK 465 PHE A 157 REMARK 465 ARG A 158 REMARK 465 ASP A 159 REMARK 465 THR A 160 REMARK 465 ASN A 161 REMARK 465 GLY A 162 REMARK 465 HIS A 163 REMARK 465 CYS A 164 REMARK 465 CYS A 165 REMARK 465 VAL A 166 REMARK 465 GLN A 167 REMARK 465 SER C 447 REMARK 465 GLU C 448 REMARK 465 ILE C 449 REMARK 465 LEU C 450 REMARK 465 ASP C 451 REMARK 465 GLU C 452 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS C 366 CG CD CE NZ REMARK 470 ASN C 387 CG OD1 ND2 REMARK 470 ARG C 408 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 155 O ARG A 156 1.60 REMARK 500 NH2 ARG A 90 NH1 ARG A 156 1.61 REMARK 500 O LEU A 105 O ALA A 137 1.86 REMARK 500 NH1 ARG A 44 OD2 ASP A 64 1.94 REMARK 500 O CYS C 311 NZ LYS C 398 2.04 REMARK 500 CG2 VAL A 7 NH1 ARG A 134 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 156 CG ASP C 372 8455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 46 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 TYR A 50 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 GLU C 353 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 GLU C 353 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 GLU C 354 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 LEU C 413 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 6 167.39 -49.58 REMARK 500 TYR A 11 116.93 107.48 REMARK 500 GLU A 12 -72.27 -103.15 REMARK 500 PRO A 74 151.93 -49.52 REMARK 500 ALA A 137 -117.40 40.35 REMARK 500 LEU A 155 78.19 -165.38 REMARK 500 GLU C 374 96.01 38.87 REMARK 500 ASP C 375 152.43 -48.21 REMARK 500 CYS C 376 78.49 -119.78 REMARK 500 PRO C 427 151.87 -48.60 REMARK 500 ILE C 445 30.77 -85.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K22 RELATED DB: PDB REMARK 900 RELATED ID: 5K24 RELATED DB: PDB REMARK 900 RELATED ID: 5K25 RELATED DB: PDB DBREF 5K23 A 1 167 UNP Q12974 TP4A2_HUMAN 1 167 DBREF 5K23 C 309 452 UNP Q8NE01 CNNM3_HUMAN 309 452 SEQADV 5K23 MET A -21 UNP Q12974 INITIATING METHIONINE SEQADV 5K23 SER A -20 UNP Q12974 EXPRESSION TAG SEQADV 5K23 TYR A -19 UNP Q12974 EXPRESSION TAG SEQADV 5K23 TYR A -18 UNP Q12974 EXPRESSION TAG SEQADV 5K23 HIS A -17 UNP Q12974 EXPRESSION TAG SEQADV 5K23 HIS A -16 UNP Q12974 EXPRESSION TAG SEQADV 5K23 HIS A -15 UNP Q12974 EXPRESSION TAG SEQADV 5K23 HIS A -14 UNP Q12974 EXPRESSION TAG SEQADV 5K23 HIS A -13 UNP Q12974 EXPRESSION TAG SEQADV 5K23 HIS A -12 UNP Q12974 EXPRESSION TAG SEQADV 5K23 LEU A -11 UNP Q12974 EXPRESSION TAG SEQADV 5K23 GLU A -10 UNP Q12974 EXPRESSION TAG SEQADV 5K23 SER A -9 UNP Q12974 EXPRESSION TAG SEQADV 5K23 THR A -8 UNP Q12974 EXPRESSION TAG SEQADV 5K23 SER A -7 UNP Q12974 EXPRESSION TAG SEQADV 5K23 LEU A -6 UNP Q12974 EXPRESSION TAG SEQADV 5K23 TYR A -5 UNP Q12974 EXPRESSION TAG SEQADV 5K23 LYS A -4 UNP Q12974 EXPRESSION TAG SEQADV 5K23 LYS A -3 UNP Q12974 EXPRESSION TAG SEQADV 5K23 ALA A -2 UNP Q12974 EXPRESSION TAG SEQADV 5K23 GLY A -1 UNP Q12974 EXPRESSION TAG SEQADV 5K23 PHE A 0 UNP Q12974 EXPRESSION TAG SEQADV 5K23 GLY C 298 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 PRO C 299 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 LEU C 300 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 ASN C 301 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 MET C 302 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 ILE C 303 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 GLN C 304 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 GLY C 305 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 VAL C 306 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 LEU C 307 UNP Q8NE01 EXPRESSION TAG SEQADV 5K23 GLU C 308 UNP Q8NE01 EXPRESSION TAG SEQRES 1 A 189 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 189 THR SER LEU TYR LYS LYS ALA GLY PHE MET ASN ARG PRO SEQRES 3 A 189 ALA PRO VAL GLU ILE SER TYR GLU ASN MET ARG PHE LEU SEQRES 4 A 189 ILE THR HIS ASN PRO THR ASN ALA THR LEU ASN LYS PHE SEQRES 5 A 189 THR GLU GLU LEU LYS LYS TYR GLY VAL THR THR LEU VAL SEQRES 6 A 189 ARG VAL CYS ASP ALA THR TYR ASP LYS ALA PRO VAL GLU SEQRES 7 A 189 LYS GLU GLY ILE HIS VAL LEU ASP TRP PRO PHE ASP ASP SEQRES 8 A 189 GLY ALA PRO PRO PRO ASN GLN ILE VAL ASP ASP TRP LEU SEQRES 9 A 189 ASN LEU LEU LYS THR LYS PHE ARG GLU GLU PRO GLY CYS SEQRES 10 A 189 CYS VAL ALA VAL HIS CYS VAL ALA GLY LEU GLY ARG ALA SEQRES 11 A 189 PRO VAL LEU VAL ALA LEU ALA LEU ILE GLU CYS GLY MET SEQRES 12 A 189 LYS TYR GLU ASP ALA VAL GLN PHE ILE ARG GLN LYS ARG SEQRES 13 A 189 ARG GLY ALA PHE ASN SER LYS GLN LEU LEU TYR LEU GLU SEQRES 14 A 189 LYS TYR ARG PRO LYS MET ARG LEU ARG PHE ARG ASP THR SEQRES 15 A 189 ASN GLY HIS CYS CYS VAL GLN SEQRES 1 C 155 GLY PRO LEU ASN MET ILE GLN GLY VAL LEU GLU LEU ARG SEQRES 2 C 155 CYS ARG THR VAL GLU ASP VAL LEU THR PRO LEU GLU ASP SEQRES 3 C 155 CYS PHE MET LEU ASP ALA SER THR VAL LEU ASP PHE GLY SEQRES 4 C 155 VAL LEU ALA SER ILE MET GLN SER GLY HIS THR ARG ILE SEQRES 5 C 155 PRO VAL TYR GLU GLU GLU ARG SER ASN ILE VAL ASP MET SEQRES 6 C 155 LEU TYR LEU LYS ASP LEU ALA PHE VAL ASP PRO GLU ASP SEQRES 7 C 155 CYS THR PRO LEU SER THR ILE THR ARG PHE TYR ASN HIS SEQRES 8 C 155 PRO LEU HIS PHE VAL PHE ASN ASP THR LYS LEU ASP ALA SEQRES 9 C 155 VAL LEU GLU GLU PHE LYS ARG GLY LYS SER HIS LEU ALA SEQRES 10 C 155 ILE VAL GLN LYS VAL ASN ASN GLU GLY GLU GLY ASP PRO SEQRES 11 C 155 PHE TYR GLU VAL LEU GLY LEU VAL THR LEU GLU ASP VAL SEQRES 12 C 155 ILE GLU GLU ILE ILE ARG SER GLU ILE LEU ASP GLU HELIX 1 AA1 THR A 26 TYR A 37 1 12 HELIX 2 AA2 LYS A 52 LYS A 57 1 6 HELIX 3 AA3 PRO A 74 GLU A 92 1 19 HELIX 4 AA4 GLY A 106 CYS A 119 1 14 HELIX 5 AA5 LYS A 122 ARG A 134 1 13 HELIX 6 AA6 ASN A 139 TYR A 149 1 11 HELIX 7 AA7 PRO C 299 LEU C 309 1 11 HELIX 8 AA8 THR C 313 LEU C 318 1 6 HELIX 9 AA9 GLU C 322 CYS C 324 5 3 HELIX 10 AB1 ASP C 334 GLY C 345 1 12 HELIX 11 AB2 LYS C 366 ALA C 369 5 4 HELIX 12 AB3 LEU C 379 ARG C 384 1 6 HELIX 13 AB4 LYS C 398 ARG C 408 1 11 HELIX 14 AB5 LEU C 437 ILE C 445 1 9 SHEET 1 AA1 5 VAL A 7 SER A 10 0 SHEET 2 AA1 5 ARG A 15 THR A 19 -1 O PHE A 16 N ILE A 9 SHEET 3 AA1 5 CYS A 96 HIS A 100 1 O VAL A 97 N ARG A 15 SHEET 4 AA1 5 VAL A 39 ARG A 44 1 N THR A 41 O ALA A 98 SHEET 5 AA1 5 HIS A 61 ASP A 64 1 O HIS A 61 N THR A 40 SHEET 1 AA2 4 THR C 319 PRO C 320 0 SHEET 2 AA2 4 PHE C 428 THR C 436 -1 O LEU C 434 N THR C 319 SHEET 3 AA2 4 LEU C 413 ASN C 420 -1 N VAL C 416 O GLY C 433 SHEET 4 AA2 4 PHE C 392 PHE C 394 1 N VAL C 393 O ILE C 415 SHEET 1 AA3 3 LEU C 327 ASP C 328 0 SHEET 2 AA3 3 ARG C 348 TYR C 352 1 O TYR C 352 N LEU C 327 SHEET 3 AA3 3 ILE C 359 TYR C 364 -1 O ASP C 361 N VAL C 351 SHEET 1 AA4 2 VAL C 332 LEU C 333 0 SHEET 2 AA4 2 THR C 377 PRO C 378 -1 O THR C 377 N LEU C 333 SSBOND 1 CYS A 46 CYS A 101 1555 1555 2.04 LINK NH2 ARG A 156 OD1 ASP C 372 1555 8455 1.21 CISPEP 1 TYR A 11 GLU A 12 0 5.64 CISPEP 2 LYS A 152 MET A 153 0 5.30 CISPEP 3 GLU C 353 GLU C 354 0 -7.31 CISPEP 4 GLU C 374 ASP C 375 0 2.58 CRYST1 51.156 124.490 159.048 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006287 0.00000