PDB Short entry for 5K53 HEADER METAL BINDING PROTEIN 23-MAY-16 5K53 TITLE CRYSTAL STRUCTURES OF ALDEHYDE DEFORMYLATING OXYGENASE FROM TITLE 2 OSCILLATORIA SP. KNUA011 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEFORMYLATING OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSCILLATORIA SP.; SOURCE 3 ORGANISM_TAXID: 1159; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FERRITIN-LIKE DI-IRON PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.PARK,H-.W.KIM REVDAT 2 08-NOV-23 5K53 1 JRNL REMARK LINK REVDAT 1 07-SEP-16 5K53 0 JRNL AUTH A.K.PARK,I.S.KIM,B.W.JEON,S.J.ROH,M.Y.RYU,H.R.BAEK,S.W.JO, JRNL AUTH 2 Y.S.KIM,H.PARK,J.H.LEE,H.S.YOON,H.W.KIM JRNL TITL CRYSTAL STRUCTURES OF ALDEHYDE DEFORMYLATING OXYGENASE FROM JRNL TITL 2 LIMNOTHRIX SP. KNUA012 AND OSCILLATORIA SP. KNUA011. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 477 395 2016 JRNL REFN ESSN 1090-2104 JRNL PMID 27329814 JRNL DOI 10.1016/J.BBRC.2016.06.090 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 41104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3581 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3470 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4819 ; 1.840 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7971 ; 1.179 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;38.245 ;25.301 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;15.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;23.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4102 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 839 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 3.261 ; 3.722 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1753 ; 3.252 ; 3.718 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2193 ; 3.987 ; 5.558 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5K53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4QUW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.50600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.43050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.13250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.43050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.50600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.13250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 SER A -25 REMARK 465 SER A -24 REMARK 465 GLY A -23 REMARK 465 LEU A -22 REMARK 465 VAL A -21 REMARK 465 PRO A -20 REMARK 465 ARG A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 MET A -15 REMARK 465 ALA A -14 REMARK 465 SER A -13 REMARK 465 MET A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLN A -8 REMARK 465 GLN A -7 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 GLY A 227 REMARK 465 LEU A 228 REMARK 465 ALA A 229 REMARK 465 ALA A 230 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 SER B -25 REMARK 465 SER B -24 REMARK 465 GLY B -23 REMARK 465 LEU B -22 REMARK 465 VAL B -21 REMARK 465 PRO B -20 REMARK 465 ARG B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 SER B -13 REMARK 465 MET B -12 REMARK 465 THR B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 GLN B -8 REMARK 465 GLN B -7 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLN B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 PRO B 8 REMARK 465 THR B 9 REMARK 465 ALA B 229 REMARK 465 ALA B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 641 O HOH A 650 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 70.67 -118.92 REMARK 500 LEU A 112 -72.95 -97.68 REMARK 500 ASP B 11 95.98 66.76 REMARK 500 LEU B 46 77.40 -113.51 REMARK 500 LEU B 112 -64.09 -104.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 STE A 502 REMARK 610 STE B 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 32 OE1 REMARK 620 2 GLU A 60 OE1 83.3 REMARK 620 3 HIS A 63 ND1 93.6 90.0 REMARK 620 4 GLU A 144 OE1 170.5 99.7 95.4 REMARK 620 5 GLU A 144 OE2 117.1 158.9 93.8 59.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 60 OE2 REMARK 620 2 GLU A 115 OE1 160.1 REMARK 620 3 GLU A 115 OE2 101.4 59.3 REMARK 620 4 GLU A 144 OE1 111.2 88.5 147.2 REMARK 620 5 HIS A 147 ND1 86.3 98.9 93.7 85.0 REMARK 620 6 STE A 502 O1 93.4 78.2 76.8 104.1 170.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 32 OE1 REMARK 620 2 GLU B 60 OE1 82.4 REMARK 620 3 HIS B 63 ND1 94.9 89.2 REMARK 620 4 GLU B 144 OE1 117.3 159.5 94.2 REMARK 620 5 GLU B 144 OE2 169.9 100.9 94.6 58.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 60 OE2 REMARK 620 2 GLU B 115 OE1 161.4 REMARK 620 3 GLU B 115 OE2 101.5 60.1 REMARK 620 4 GLU B 144 OE2 110.8 87.8 147.1 REMARK 620 5 HIS B 147 ND1 82.6 99.1 89.3 89.3 REMARK 620 6 STE B 502 O1 90.4 84.0 81.0 103.8 166.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STE B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K52 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. DBREF 5K53 A -31 230 PDB 5K53 5K53 -31 230 DBREF 5K53 B -31 230 PDB 5K53 5K53 -31 230 SEQRES 1 A 262 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 262 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 3 A 262 GLY ARG GLY SER GLU PHE MET PRO GLN LEU GLU ALA SER SEQRES 4 A 262 PRO THR ILE ASP PHE GLN THR GLU THR TYR LYS ASP ALA SEQRES 5 A 262 TYR SER ARG ILE ASN ALA ILE VAL ILE GLU GLY GLU GLN SEQRES 6 A 262 GLU ALA HIS ASP ASN TYR LEU THR LEU ALA GLU LEU LEU SEQRES 7 A 262 ALA ASP LYS LYS ALA GLU LEU VAL GLY LEU SER LYS MET SEQRES 8 A 262 GLU ASN ARG HIS MET LYS GLY PHE GLN ALA CYS GLY ARG SEQRES 9 A 262 ASN LEU LYS VAL THR PRO ASP MET ALA PHE ALA LYS GLN SEQRES 10 A 262 PHE PHE SER GLU LEU HIS LYS ASN PHE GLN THR ALA ALA SEQRES 11 A 262 ALA GLN GLY GLN ILE VAL THR CYS LEU LEU ILE GLN SER SEQRES 12 A 262 LEU ILE ILE GLU CYS PHE ALA ILE ALA ALA TYR ASN ILE SEQRES 13 A 262 TYR ILE PRO VAL ALA ASP ASP PHE ALA ARG LYS ILE THR SEQRES 14 A 262 GLU GLY VAL VAL LYS GLU GLU TYR SER HIS LEU ASN PHE SEQRES 15 A 262 GLY GLU VAL TRP LEU GLN ALA HIS PHE GLU GLU SER LYS SEQRES 16 A 262 ALA GLU LEU GLU ALA ALA ASN ARG GLN ASN LEU PRO ILE SEQRES 17 A 262 ILE TRP LYS LEU LEU ASN ALA VAL ALA ASP ASP ALA ARG SEQRES 18 A 262 VAL LEU GLY MET GLU LYS ASP ALA LEU ILE GLU ASP PHE SEQRES 19 A 262 MET ILE ALA TYR GLY GLU ALA LEU GLY ASN ILE GLY PHE SEQRES 20 A 262 ASN ASN ARG ASP ILE MET ARG MET SER ALA GLN GLY LEU SEQRES 21 A 262 ALA ALA SEQRES 1 B 262 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 262 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 3 B 262 GLY ARG GLY SER GLU PHE MET PRO GLN LEU GLU ALA SER SEQRES 4 B 262 PRO THR ILE ASP PHE GLN THR GLU THR TYR LYS ASP ALA SEQRES 5 B 262 TYR SER ARG ILE ASN ALA ILE VAL ILE GLU GLY GLU GLN SEQRES 6 B 262 GLU ALA HIS ASP ASN TYR LEU THR LEU ALA GLU LEU LEU SEQRES 7 B 262 ALA ASP LYS LYS ALA GLU LEU VAL GLY LEU SER LYS MET SEQRES 8 B 262 GLU ASN ARG HIS MET LYS GLY PHE GLN ALA CYS GLY ARG SEQRES 9 B 262 ASN LEU LYS VAL THR PRO ASP MET ALA PHE ALA LYS GLN SEQRES 10 B 262 PHE PHE SER GLU LEU HIS LYS ASN PHE GLN THR ALA ALA SEQRES 11 B 262 ALA GLN GLY GLN ILE VAL THR CYS LEU LEU ILE GLN SER SEQRES 12 B 262 LEU ILE ILE GLU CYS PHE ALA ILE ALA ALA TYR ASN ILE SEQRES 13 B 262 TYR ILE PRO VAL ALA ASP ASP PHE ALA ARG LYS ILE THR SEQRES 14 B 262 GLU GLY VAL VAL LYS GLU GLU TYR SER HIS LEU ASN PHE SEQRES 15 B 262 GLY GLU VAL TRP LEU GLN ALA HIS PHE GLU GLU SER LYS SEQRES 16 B 262 ALA GLU LEU GLU ALA ALA ASN ARG GLN ASN LEU PRO ILE SEQRES 17 B 262 ILE TRP LYS LEU LEU ASN ALA VAL ALA ASP ASP ALA ARG SEQRES 18 B 262 VAL LEU GLY MET GLU LYS ASP ALA LEU ILE GLU ASP PHE SEQRES 19 B 262 MET ILE ALA TYR GLY GLU ALA LEU GLY ASN ILE GLY PHE SEQRES 20 B 262 ASN ASN ARG ASP ILE MET ARG MET SER ALA GLN GLY LEU SEQRES 21 B 262 ALA ALA HET FE A 500 1 HET FE A 501 1 HET STE A 502 19 HET FE B 500 1 HET FE B 501 1 HET STE B 502 19 HETNAM FE FE (III) ION HETNAM STE STEARIC ACID FORMUL 3 FE 4(FE 3+) FORMUL 5 STE 2(C18 H36 O2) FORMUL 9 HOH *96(H2 O) HELIX 1 AA1 THR A 14 LEU A 46 1 33 HELIX 2 AA2 LYS A 49 LEU A 74 1 26 HELIX 3 AA3 ASP A 79 GLN A 100 1 22 HELIX 4 AA4 GLN A 102 SER A 111 1 10 HELIX 5 AA5 LEU A 112 ILE A 126 1 15 HELIX 6 AA6 PRO A 127 ALA A 129 5 3 HELIX 7 AA7 ASP A 130 HIS A 158 1 29 HELIX 8 AA8 HIS A 158 LEU A 191 1 34 HELIX 9 AA9 GLU A 194 GLY A 214 1 21 HELIX 10 AB1 ASN A 216 ALA A 225 1 10 HELIX 11 AB2 THR B 14 LEU B 46 1 33 HELIX 12 AB3 LYS B 49 LYS B 75 1 27 HELIX 13 AB4 ASP B 79 PHE B 87 1 9 HELIX 14 AB5 PHE B 87 GLN B 100 1 14 HELIX 15 AB6 GLN B 102 SER B 111 1 10 HELIX 16 AB7 LEU B 112 ILE B 126 1 15 HELIX 17 AB8 PRO B 127 ALA B 129 5 3 HELIX 18 AB9 ASP B 130 HIS B 158 1 29 HELIX 19 AC1 HIS B 158 LEU B 191 1 34 HELIX 20 AC2 GLU B 194 GLY B 214 1 21 HELIX 21 AC3 ASN B 216 ALA B 225 1 10 LINK OE1 GLU A 32 FE FE A 500 1555 1555 2.14 LINK OE1 GLU A 60 FE FE A 500 1555 1555 2.06 LINK OE2 GLU A 60 FE FE A 501 1555 1555 2.04 LINK ND1 HIS A 63 FE FE A 500 1555 1555 2.13 LINK OE1 GLU A 115 FE FE A 501 1555 1555 2.33 LINK OE2 GLU A 115 FE FE A 501 1555 1555 2.16 LINK OE1AGLU A 144 FE FE A 500 1555 1555 2.29 LINK OE2AGLU A 144 FE FE A 500 1555 1555 2.17 LINK OE1AGLU A 144 FE FE A 501 1555 1555 2.18 LINK ND1 HIS A 147 FE FE A 501 1555 1555 2.31 LINK FE FE A 501 O1 STE A 502 1555 1555 2.57 LINK OE1 GLU B 32 FE FE B 501 1555 1555 1.86 LINK OE2 GLU B 60 FE FE B 500 1555 1555 1.92 LINK OE1 GLU B 60 FE FE B 501 1555 1555 2.04 LINK ND1 HIS B 63 FE FE B 501 1555 1555 2.19 LINK OE1 GLU B 115 FE FE B 500 1555 1555 2.31 LINK OE2 GLU B 115 FE FE B 500 1555 1555 2.26 LINK OE2AGLU B 144 FE FE B 500 1555 1555 2.13 LINK OE1AGLU B 144 FE FE B 501 1555 1555 2.18 LINK OE2AGLU B 144 FE FE B 501 1555 1555 2.32 LINK ND1 HIS B 147 FE FE B 500 1555 1555 2.28 LINK FE FE B 500 O1 STE B 502 1555 1555 2.28 CISPEP 1 GLY B 227 LEU B 228 0 10.48 SITE 1 AC1 6 GLU A 32 GLU A 60 HIS A 63 GLU A 144 SITE 2 AC1 6 FE A 501 STE A 502 SITE 1 AC2 6 GLU A 60 GLU A 115 GLU A 144 HIS A 147 SITE 2 AC2 6 FE A 500 STE A 502 SITE 1 AC3 14 TYR A 21 ILE A 24 GLU A 32 ALA A 35 SITE 2 AC3 14 GLU A 60 GLN A 110 ILE A 114 GLU A 115 SITE 3 AC3 14 PHE A 117 TYR A 122 TYR A 125 GLU A 144 SITE 4 AC3 14 FE A 500 FE A 501 SITE 1 AC4 6 GLU B 60 GLU B 115 GLU B 144 HIS B 147 SITE 2 AC4 6 FE B 501 STE B 502 SITE 1 AC5 6 GLU B 32 GLU B 60 HIS B 63 GLU B 144 SITE 2 AC5 6 FE B 500 STE B 502 SITE 1 AC6 17 TYR B 21 ILE B 24 VAL B 28 GLY B 31 SITE 2 AC6 17 GLU B 32 ALA B 35 GLU B 60 GLN B 110 SITE 3 AC6 17 ILE B 114 GLU B 115 PHE B 117 ALA B 121 SITE 4 AC6 17 TYR B 122 TYR B 125 GLU B 144 FE B 500 SITE 5 AC6 17 FE B 501 CRYST1 55.012 78.265 108.861 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009186 0.00000