PDB Short entry for 5K5F HEADER DNA BINDING PROTEIN 23-MAY-16 5K5F TITLE NMR STRUCTURE OF THE HLTF HIRAN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HELICASE-LIKE TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 51-171; COMPND 5 SYNONYM: DNA-BINDING PROTEIN/PLASMINOGEN ACTIVATOR INHIBITOR 1 COMPND 6 REGULATOR,HIP116,RING FINGER PROTEIN 80,SWI/SNF-RELATED MATRIX- COMPND 7 ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A MEMBER COMPND 8 3,SUCROSE NONFERMENTING PROTEIN 2-LIKE 3; COMPND 9 EC: 3.6.4.-,6.3.2.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLTF, HIP116A, RNF80, SMARCA3, SNF2L3, ZBU1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-BINDING, DNA REPLICATION, STRUCTURAL GENOMICS, PSI-BIOLOGY, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.BEZSONOVA,D.NECULAI,D.KORZHNEV,J.WEIGELT,C.BOUNTRA,A.EDWARDS, AUTHOR 2 C.ARROWSMITH,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 14-JUN-23 5K5F 1 COMPND REMARK REVDAT 1 08-JUN-16 5K5F 0 SPRSDE 08-JUN-16 5K5F 2L1I JRNL AUTH I.BEZSONOVA,D.NECULAI,D.KORZHNEV,C.ARROWSMITH,S.DHE-PAGANON JRNL TITL NMR STRUCTURE OF THE HLTF HIRAN DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 5K5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221791. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] HLTF REMARK 210 HIRAN DOMAIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE, SPARKY, TALOS, REMARK 210 ABACUS, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 94 162.20 172.10 REMARK 500 1 GLN A 107 99.67 -65.17 REMARK 500 1 LYS A 112 133.81 150.85 REMARK 500 1 PHE A 142 -77.86 -151.34 REMARK 500 2 ASN A 90 33.95 -98.75 REMARK 500 2 ASN A 102 -168.92 -75.71 REMARK 500 2 LYS A 112 166.49 170.72 REMARK 500 3 SER A 51 36.33 -85.12 REMARK 500 3 HIS A 66 87.64 -68.08 REMARK 500 3 ASN A 78 -146.26 -109.68 REMARK 500 3 ASN A 80 -5.44 68.83 REMARK 500 3 ASN A 90 106.95 -167.38 REMARK 500 3 GLN A 107 95.37 -69.78 REMARK 500 3 LYS A 112 121.83 152.12 REMARK 500 4 TYR A 93 -50.72 -128.61 REMARK 500 4 LYS A 112 168.77 172.01 REMARK 500 4 PHE A 142 -83.49 -141.50 REMARK 500 5 VAL A 76 158.28 -42.19 REMARK 500 5 ASN A 78 -76.84 -72.75 REMARK 500 5 ASN A 80 -7.60 70.70 REMARK 500 5 TYR A 93 -53.38 -120.84 REMARK 500 5 ASN A 102 -165.60 -107.10 REMARK 500 5 GLN A 107 92.45 -61.64 REMARK 500 5 LYS A 112 -179.32 -178.47 REMARK 500 6 VAL A 76 169.31 -41.45 REMARK 500 6 ASN A 78 -166.70 -75.15 REMARK 500 6 ASP A 94 157.04 177.74 REMARK 500 6 ASN A 102 -169.95 -107.51 REMARK 500 6 LYS A 112 -156.44 64.08 REMARK 500 7 ARG A 71 -6.63 -56.88 REMARK 500 7 VAL A 76 171.51 -52.84 REMARK 500 7 ASN A 90 47.73 -91.70 REMARK 500 7 HIS A 110 113.62 -161.34 REMARK 500 7 LYS A 112 149.18 70.71 REMARK 500 8 VAL A 76 155.80 -40.46 REMARK 500 8 LYS A 112 126.96 162.54 REMARK 500 8 ALA A 141 -64.35 -92.17 REMARK 500 9 ASN A 78 -166.78 -104.83 REMARK 500 9 ASN A 80 -18.54 77.17 REMARK 500 9 TYR A 93 -56.08 -120.52 REMARK 500 9 LYS A 112 129.68 69.63 REMARK 500 10 TYR A 93 -52.79 -126.30 REMARK 500 10 LYS A 112 141.86 68.74 REMARK 500 10 ALA A 141 -60.90 -97.80 REMARK 500 10 LYS A 170 138.56 -172.81 REMARK 500 11 VAL A 76 164.16 -40.90 REMARK 500 11 ASN A 78 -79.27 -70.38 REMARK 500 11 LYS A 112 143.29 147.31 REMARK 500 12 VAL A 76 165.83 -43.71 REMARK 500 12 ASN A 78 -82.05 -94.91 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MZN RELATED DB: PDB REMARK 900 RELATED ID: 30098 RELATED DB: BMRB DBREF 5K5F A 51 171 UNP Q14527 HLTF_HUMAN 51 171 SEQADV 5K5F GLY A 50 UNP Q14527 EXPRESSION TAG SEQRES 1 A 122 GLY SER ASP GLU GLU VAL ASP SER VAL LEU PHE GLY SER SEQRES 2 A 122 LEU ARG GLY HIS VAL VAL GLY LEU ARG TYR TYR THR GLY SEQRES 3 A 122 VAL VAL ASN ASN ASN GLU MET VAL ALA LEU GLN ARG ASP SEQRES 4 A 122 PRO ASN ASN PRO TYR ASP LYS ASN ALA ILE LYS VAL ASN SEQRES 5 A 122 ASN VAL ASN GLY ASN GLN VAL GLY HIS LEU LYS LYS GLU SEQRES 6 A 122 LEU ALA GLY ALA LEU ALA TYR ILE MET ASP ASN LYS LEU SEQRES 7 A 122 ALA GLN ILE GLU GLY VAL VAL PRO PHE GLY ALA ASN ASN SEQRES 8 A 122 ALA PHE THR MET PRO LEU HIS MET THR PHE TRP GLY LYS SEQRES 9 A 122 GLU GLU ASN ARG LYS ALA VAL SER ASP GLN LEU LYS LYS SEQRES 10 A 122 HIS GLY PHE LYS LEU HELIX 1 AA1 SER A 51 ASP A 56 1 6 HELIX 2 AA2 GLY A 69 GLY A 75 5 7 HELIX 3 AA3 LYS A 112 ASN A 125 1 14 HELIX 4 AA4 ASN A 156 GLY A 168 1 13 SHEET 1 AA1 6 SER A 57 VAL A 67 0 SHEET 2 AA1 6 MET A 144 LYS A 153 -1 O GLY A 152 N VAL A 58 SHEET 3 AA1 6 GLN A 129 VAL A 134 -1 N GLN A 129 O TRP A 151 SHEET 4 AA1 6 GLU A 81 ARG A 87 -1 N GLU A 81 O VAL A 134 SHEET 5 AA1 6 ILE A 98 ASN A 102 -1 O LYS A 99 N GLN A 86 SHEET 6 AA1 6 GLN A 107 HIS A 110 -1 O GLY A 109 N VAL A 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000