PDB Short entry for 5K5L HEADER TRANSCRIPTION/DNA 23-MAY-16 5K5L TITLE HOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF6-8 AND H19 SEQUENCE DNA TITLE 2 COMPLEX STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*TP*GP*CP*CP*GP*CP*GP*TP*G)-3'); COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*AP*CP*GP*CP*GP*GP*CP*AP*AP*C)-3'); COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 11 CHAIN: E, F, G; COMPND 12 FRAGMENT: UNP RESIDUES 405-492; COMPND 13 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: CTCF; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL-CODON PLUS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PXC1197 KEYWDS CCCTC-BINDING FACTOR, CTCF, ZINC FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 6 06-MAR-24 5K5L 1 REMARK REVDAT 5 25-DEC-19 5K5L 1 REMARK REVDAT 4 20-SEP-17 5K5L 1 REMARK REVDAT 3 14-JUN-17 5K5L 1 JRNL REVDAT 2 07-JUN-17 5K5L 1 JRNL REVDAT 1 24-MAY-17 5K5L 0 JRNL AUTH H.HASHIMOTO,D.WANG,J.R.HORTON,X.ZHANG,V.G.CORCES,X.CHENG JRNL TITL STRUCTURAL BASIS FOR THE VERSATILE AND METHYLATION-DEPENDENT JRNL TITL 2 BINDING OF CTCF TO DNA. JRNL REF MOL. CELL V. 66 711 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 28529057 JRNL DOI 10.1016/J.MOLCEL.2017.05.004 REMARK 2 REMARK 2 RESOLUTION. 3.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2313: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 15139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7000 - 6.7276 0.94 1414 70 0.1957 0.2085 REMARK 3 2 6.7276 - 5.3424 0.99 1483 77 0.2178 0.2311 REMARK 3 3 5.3424 - 4.6678 1.00 1498 77 0.2161 0.2720 REMARK 3 4 4.6678 - 4.2413 1.00 1515 80 0.2337 0.3046 REMARK 3 5 4.2413 - 3.9375 1.00 1485 77 0.2490 0.2512 REMARK 3 6 3.9375 - 3.7054 1.00 1493 81 0.2622 0.3213 REMARK 3 7 3.7054 - 3.5199 0.98 1462 81 0.2643 0.3147 REMARK 3 8 3.5199 - 3.3668 0.98 1469 77 0.2708 0.3259 REMARK 3 9 3.3668 - 3.2372 0.95 1423 73 0.2934 0.3127 REMARK 3 10 3.2372 - 3.1255 0.77 1141 63 0.3326 0.3705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2670 REMARK 3 ANGLE : 0.535 3718 REMARK 3 CHIRALITY : 0.039 393 REMARK 3 PLANARITY : 0.003 329 REMARK 3 DIHEDRAL : 19.673 1422 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:11) REMARK 3 ORIGIN FOR THE GROUP (A): 144.2636 17.9628 -13.1148 REMARK 3 T TENSOR REMARK 3 T11: 1.4267 T22: 1.2891 REMARK 3 T33: 0.7105 T12: 0.1186 REMARK 3 T13: -0.2189 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 5.7603 L22: 7.3747 REMARK 3 L33: 4.0190 L12: 4.2461 REMARK 3 L13: -4.0765 L23: -5.2128 REMARK 3 S TENSOR REMARK 3 S11: 0.5268 S12: 1.1759 S13: -0.8011 REMARK 3 S21: -1.1930 S22: 0.4129 S23: 0.5844 REMARK 3 S31: -0.2101 S32: -0.5093 S33: -0.7362 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 2:11) REMARK 3 ORIGIN FOR THE GROUP (A): 144.9411 17.3357 -11.9992 REMARK 3 T TENSOR REMARK 3 T11: 1.6305 T22: 1.2735 REMARK 3 T33: 0.6611 T12: -0.2043 REMARK 3 T13: -0.0400 T23: 0.1666 REMARK 3 L TENSOR REMARK 3 L11: 5.9264 L22: 4.8208 REMARK 3 L33: 4.3673 L12: -0.8084 REMARK 3 L13: 2.7284 L23: 3.4659 REMARK 3 S TENSOR REMARK 3 S11: 0.6598 S12: 1.5506 S13: -0.2714 REMARK 3 S21: -0.7447 S22: 0.6246 S23: 0.2038 REMARK 3 S31: 1.0630 S32: -0.0331 S33: -1.1332 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 1:11) REMARK 3 ORIGIN FOR THE GROUP (A): 143.3827 17.4105 23.1053 REMARK 3 T TENSOR REMARK 3 T11: 1.1175 T22: 1.5947 REMARK 3 T33: 0.6288 T12: -0.3919 REMARK 3 T13: 0.1454 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 5.1597 L22: 5.4987 REMARK 3 L33: 6.0784 L12: -4.4107 REMARK 3 L13: 1.5332 L23: 1.4443 REMARK 3 S TENSOR REMARK 3 S11: 0.3170 S12: -1.2339 S13: 0.4067 REMARK 3 S21: 1.0349 S22: 0.3209 S23: 0.1747 REMARK 3 S31: -0.9839 S32: 0.7817 S33: -0.5002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 1:11) REMARK 3 ORIGIN FOR THE GROUP (A): 143.4620 17.1398 21.8367 REMARK 3 T TENSOR REMARK 3 T11: 0.9518 T22: 1.4129 REMARK 3 T33: 0.5825 T12: -0.2181 REMARK 3 T13: -0.0347 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.0358 L22: 6.8620 REMARK 3 L33: 8.4579 L12: -2.8470 REMARK 3 L13: -4.7876 L23: 2.9033 REMARK 3 S TENSOR REMARK 3 S11: 0.7895 S12: -1.1667 S13: 0.1684 REMARK 3 S21: 0.9909 S22: -0.0745 S23: -0.2901 REMARK 3 S31: -0.7748 S32: -0.9273 S33: -0.4431 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN E AND RESID 436:448) REMARK 3 ORIGIN FOR THE GROUP (A): 152.5749 32.3687 -22.2442 REMARK 3 T TENSOR REMARK 3 T11: 0.9440 T22: 1.1994 REMARK 3 T33: 0.5201 T12: -0.3728 REMARK 3 T13: -0.0669 T23: -0.1298 REMARK 3 L TENSOR REMARK 3 L11: 7.7413 L22: 7.6693 REMARK 3 L33: 1.7565 L12: 1.3767 REMARK 3 L13: 0.7468 L23: -3.4023 REMARK 3 S TENSOR REMARK 3 S11: -0.2841 S12: 0.3707 S13: 0.0664 REMARK 3 S21: 0.5176 S22: 0.5263 S23: -1.3166 REMARK 3 S31: 1.4471 S32: -1.3079 S33: 0.1832 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN E AND RESID 449:491) REMARK 3 ORIGIN FOR THE GROUP (A): 142.6001 35.1647 -9.3621 REMARK 3 T TENSOR REMARK 3 T11: 0.7595 T22: 0.9172 REMARK 3 T33: 0.4389 T12: -0.0707 REMARK 3 T13: -0.1053 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.5701 L22: 3.8796 REMARK 3 L33: 7.8097 L12: 0.3326 REMARK 3 L13: 0.4618 L23: 0.5505 REMARK 3 S TENSOR REMARK 3 S11: -0.3291 S12: 0.9137 S13: -0.0947 REMARK 3 S21: -0.4814 S22: -0.1185 S23: 0.3272 REMARK 3 S31: 0.9401 S32: -0.2733 S33: 0.4177 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN F AND RESID 436:471) REMARK 3 ORIGIN FOR THE GROUP (A): 130.8966 8.5410 16.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.4106 T22: 0.5519 REMARK 3 T33: 0.8731 T12: -0.2073 REMARK 3 T13: -0.0415 T23: 0.1602 REMARK 3 L TENSOR REMARK 3 L11: 7.2022 L22: 3.1591 REMARK 3 L33: 8.2937 L12: -0.0770 REMARK 3 L13: 3.7162 L23: 1.8434 REMARK 3 S TENSOR REMARK 3 S11: 0.6026 S12: -0.6131 S13: -0.8830 REMARK 3 S21: 0.9675 S22: -0.2675 S23: 0.1729 REMARK 3 S31: -0.3369 S32: 0.3090 S33: -0.4475 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN F AND RESID 472:492) REMARK 3 ORIGIN FOR THE GROUP (A): 128.2361 5.5760 3.8407 REMARK 3 T TENSOR REMARK 3 T11: 0.6281 T22: 0.8892 REMARK 3 T33: 1.2711 T12: 0.0836 REMARK 3 T13: -0.0784 T23: 0.0952 REMARK 3 L TENSOR REMARK 3 L11: 4.8786 L22: 3.1361 REMARK 3 L33: 4.9614 L12: 0.9828 REMARK 3 L13: -0.1432 L23: -0.2593 REMARK 3 S TENSOR REMARK 3 S11: 0.1650 S12: -0.3223 S13: -3.0799 REMARK 3 S21: 0.1038 S22: -0.4477 S23: -1.1918 REMARK 3 S31: 0.8097 S32: 0.9429 S33: 0.0812 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN G AND RESID 408:417) REMARK 3 ORIGIN FOR THE GROUP (A): 141.2718 -4.4528 -11.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.8193 T22: 0.7247 REMARK 3 T33: 0.8296 T12: -0.0122 REMARK 3 T13: -0.2243 T23: 0.4432 REMARK 3 L TENSOR REMARK 3 L11: 7.5913 L22: 6.4210 REMARK 3 L33: 9.1508 L12: -5.5205 REMARK 3 L13: 3.1607 L23: -6.6432 REMARK 3 S TENSOR REMARK 3 S11: 0.4006 S12: 1.0140 S13: -0.0232 REMARK 3 S21: -2.3118 S22: 1.7030 S23: 3.1325 REMARK 3 S31: -0.0764 S32: -3.0729 S33: 2.5017 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN G AND RESID 418:436) REMARK 3 ORIGIN FOR THE GROUP (A): 145.2202 1.9732 -4.8448 REMARK 3 T TENSOR REMARK 3 T11: 0.7835 T22: 0.6883 REMARK 3 T33: 1.2288 T12: 0.1791 REMARK 3 T13: 0.4299 T23: 0.3681 REMARK 3 L TENSOR REMARK 3 L11: 5.9130 L22: 7.3372 REMARK 3 L33: 1.3717 L12: -5.6016 REMARK 3 L13: 2.0738 L23: -0.8234 REMARK 3 S TENSOR REMARK 3 S11: -0.1974 S12: -0.9800 S13: 0.9233 REMARK 3 S21: 1.8703 S22: 1.0675 S23: 1.9666 REMARK 3 S31: -0.7849 S32: -0.9719 S33: 0.0596 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN G AND RESID 437:491) REMARK 3 ORIGIN FOR THE GROUP (A): 160.6125 18.6581 13.6470 REMARK 3 T TENSOR REMARK 3 T11: 0.5889 T22: 0.7513 REMARK 3 T33: 0.2452 T12: -0.1722 REMARK 3 T13: 0.0170 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 2.4253 L22: 4.0645 REMARK 3 L33: 7.2515 L12: -0.9408 REMARK 3 L13: -2.3336 L23: -0.1891 REMARK 3 S TENSOR REMARK 3 S11: 0.2400 S12: -1.1503 S13: 0.1462 REMARK 3 S21: 0.7664 S22: -0.2434 S23: 0.1816 REMARK 3 S31: -0.3504 S32: 0.6025 S33: -0.1494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2829 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15139 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.125 REMARK 200 RESOLUTION RANGE LOW (A) : 46.725 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9170 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.556 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL 8,000 REMARK 280 0.1 M CHES-NAOH PH 9.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 63.39600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.19850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.39600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.19850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC B 1 REMARK 465 GLY E 400 REMARK 465 PRO E 401 REMARK 465 LEU E 402 REMARK 465 GLY E 403 REMARK 465 SER E 404 REMARK 465 LYS E 405 REMARK 465 PRO E 406 REMARK 465 TYR E 407 REMARK 465 GLU E 408 REMARK 465 CYS E 409 REMARK 465 TYR E 410 REMARK 465 ILE E 411 REMARK 465 CYS E 412 REMARK 465 HIS E 413 REMARK 465 ALA E 414 REMARK 465 ARG E 415 REMARK 465 PHE E 416 REMARK 465 THR E 417 REMARK 465 GLN E 418 REMARK 465 SER E 419 REMARK 465 GLY E 420 REMARK 465 THR E 421 REMARK 465 MET E 422 REMARK 465 LYS E 423 REMARK 465 MET E 424 REMARK 465 HIS E 425 REMARK 465 ILE E 426 REMARK 465 LEU E 427 REMARK 465 GLN E 428 REMARK 465 LYS E 429 REMARK 465 HIS E 430 REMARK 465 THR E 431 REMARK 465 GLU E 432 REMARK 465 ASN E 433 REMARK 465 VAL E 434 REMARK 465 ALA E 435 REMARK 465 GLU E 492 REMARK 465 GLY F 400 REMARK 465 PRO F 401 REMARK 465 LEU F 402 REMARK 465 GLY F 403 REMARK 465 SER F 404 REMARK 465 LYS F 405 REMARK 465 PRO F 406 REMARK 465 TYR F 407 REMARK 465 GLU F 408 REMARK 465 CYS F 409 REMARK 465 TYR F 410 REMARK 465 ILE F 411 REMARK 465 CYS F 412 REMARK 465 HIS F 413 REMARK 465 ALA F 414 REMARK 465 ARG F 415 REMARK 465 PHE F 416 REMARK 465 THR F 417 REMARK 465 GLN F 418 REMARK 465 SER F 419 REMARK 465 GLY F 420 REMARK 465 THR F 421 REMARK 465 MET F 422 REMARK 465 LYS F 423 REMARK 465 MET F 424 REMARK 465 HIS F 425 REMARK 465 ILE F 426 REMARK 465 LEU F 427 REMARK 465 GLN F 428 REMARK 465 LYS F 429 REMARK 465 HIS F 430 REMARK 465 THR F 431 REMARK 465 GLU F 432 REMARK 465 ASN F 433 REMARK 465 VAL F 434 REMARK 465 ALA F 435 REMARK 465 GLY G 400 REMARK 465 PRO G 401 REMARK 465 LEU G 402 REMARK 465 GLY G 403 REMARK 465 SER G 404 REMARK 465 LYS G 405 REMARK 465 PRO G 406 REMARK 465 TYR G 407 REMARK 465 GLU G 492 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG A 11 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DG A 11 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG A 11 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP G 473 30.53 -97.79 REMARK 500 HIS G 489 0.43 -64.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 439 SG REMARK 620 2 CYS E 442 SG 97.6 REMARK 620 3 HIS E 455 NE2 131.4 106.3 REMARK 620 4 HIS E 460 NE2 94.6 89.9 126.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 469 SG REMARK 620 2 CYS E 472 SG 110.4 REMARK 620 3 HIS E 485 NE2 105.1 106.9 REMARK 620 4 HIS E 489 NE2 114.3 114.1 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 439 SG REMARK 620 2 CYS F 442 SG 108.7 REMARK 620 3 HIS F 455 NE2 111.2 100.4 REMARK 620 4 HIS F 460 NE2 113.9 108.0 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 469 SG REMARK 620 2 CYS F 472 SG 100.5 REMARK 620 3 HIS F 485 NE2 141.9 101.5 REMARK 620 4 HIS F 489 NE2 114.2 95.0 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 409 SG REMARK 620 2 CYS G 412 SG 124.7 REMARK 620 3 HIS G 425 NE2 107.1 116.7 REMARK 620 4 HIS G 430 NE2 108.9 89.2 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 439 SG REMARK 620 2 CYS G 442 SG 101.5 REMARK 620 3 HIS G 455 NE2 106.8 104.5 REMARK 620 4 HIS G 460 NE2 108.2 120.4 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 469 SG REMARK 620 2 CYS G 472 SG 103.5 REMARK 620 3 HIS G 485 NE2 103.8 93.2 REMARK 620 4 HIS G 489 NE2 118.5 134.5 93.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K5J RELATED DB: PDB REMARK 900 RELATED ID: 5K5I RELATED DB: PDB REMARK 900 RELATED ID: 5K5H RELATED DB: PDB DBREF 5K5L A 1 11 PDB 5K5L 5K5L 1 11 DBREF 5K5L B 1 11 PDB 5K5L 5K5L 1 11 DBREF 5K5L C 1 11 PDB 5K5L 5K5L 1 11 DBREF 5K5L D 1 11 PDB 5K5L 5K5L 1 11 DBREF 5K5L E 405 492 UNP P49711 CTCF_HUMAN 405 492 DBREF 5K5L F 405 492 UNP P49711 CTCF_HUMAN 405 492 DBREF 5K5L G 405 492 UNP P49711 CTCF_HUMAN 405 492 SEQADV 5K5L GLY E 400 UNP P49711 EXPRESSION TAG SEQADV 5K5L PRO E 401 UNP P49711 EXPRESSION TAG SEQADV 5K5L LEU E 402 UNP P49711 EXPRESSION TAG SEQADV 5K5L GLY E 403 UNP P49711 EXPRESSION TAG SEQADV 5K5L SER E 404 UNP P49711 EXPRESSION TAG SEQADV 5K5L GLY F 400 UNP P49711 EXPRESSION TAG SEQADV 5K5L PRO F 401 UNP P49711 EXPRESSION TAG SEQADV 5K5L LEU F 402 UNP P49711 EXPRESSION TAG SEQADV 5K5L GLY F 403 UNP P49711 EXPRESSION TAG SEQADV 5K5L SER F 404 UNP P49711 EXPRESSION TAG SEQADV 5K5L GLY G 400 UNP P49711 EXPRESSION TAG SEQADV 5K5L PRO G 401 UNP P49711 EXPRESSION TAG SEQADV 5K5L LEU G 402 UNP P49711 EXPRESSION TAG SEQADV 5K5L GLY G 403 UNP P49711 EXPRESSION TAG SEQADV 5K5L SER G 404 UNP P49711 EXPRESSION TAG SEQRES 1 A 11 DG DT DT DG DC DC DG DC DG DT DG SEQRES 1 B 11 DC DA DC DG DC DG DG DC DA DA DC SEQRES 1 C 11 DG DT DT DG DC DC DG DC DG DT DG SEQRES 1 D 11 DC DA DC DG DC DG DG DC DA DA DC SEQRES 1 E 93 GLY PRO LEU GLY SER LYS PRO TYR GLU CYS TYR ILE CYS SEQRES 2 E 93 HIS ALA ARG PHE THR GLN SER GLY THR MET LYS MET HIS SEQRES 3 E 93 ILE LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE HIS SEQRES 4 E 93 CYS PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER ASP SEQRES 5 E 93 LEU GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE GLU SEQRES 6 E 93 GLN GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS SEQRES 7 E 93 GLU ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS LYS SEQRES 8 E 93 ASN GLU SEQRES 1 F 93 GLY PRO LEU GLY SER LYS PRO TYR GLU CYS TYR ILE CYS SEQRES 2 F 93 HIS ALA ARG PHE THR GLN SER GLY THR MET LYS MET HIS SEQRES 3 F 93 ILE LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE HIS SEQRES 4 F 93 CYS PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER ASP SEQRES 5 F 93 LEU GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE GLU SEQRES 6 F 93 GLN GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS SEQRES 7 F 93 GLU ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS LYS SEQRES 8 F 93 ASN GLU SEQRES 1 G 93 GLY PRO LEU GLY SER LYS PRO TYR GLU CYS TYR ILE CYS SEQRES 2 G 93 HIS ALA ARG PHE THR GLN SER GLY THR MET LYS MET HIS SEQRES 3 G 93 ILE LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE HIS SEQRES 4 G 93 CYS PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER ASP SEQRES 5 G 93 LEU GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE GLU SEQRES 6 G 93 GLN GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS SEQRES 7 G 93 GLU ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS LYS SEQRES 8 G 93 ASN GLU HET ZN E 501 1 HET ZN E 502 1 HET ZN F 501 1 HET ZN F 502 1 HET ZN G 501 1 HET ZN G 502 1 HET ZN G 503 1 HETNAM ZN ZINC ION FORMUL 8 ZN 7(ZN 2+) FORMUL 15 HOH *2(H2 O) HELIX 1 AA1 ARG E 448 SER E 461 1 14 HELIX 2 AA2 GLU E 478 SER E 488 1 11 HELIX 3 AA3 HIS E 489 ASN E 491 5 3 HELIX 4 AA4 LYS F 449 HIS F 460 1 12 HELIX 5 AA5 ARG F 479 ASN F 491 1 13 HELIX 6 AA6 GLN G 418 LYS G 429 1 12 HELIX 7 AA7 HIS G 430 VAL G 434 5 5 HELIX 8 AA8 ARG G 448 HIS G 460 1 13 HELIX 9 AA9 GLU G 478 HIS G 489 1 12 SHEET 1 AA1 2 PHE E 437 HIS E 438 0 SHEET 2 AA1 2 VAL E 445 ILE E 446 -1 O ILE E 446 N PHE E 437 SHEET 1 AA2 2 LYS E 467 LYS E 468 0 SHEET 2 AA2 2 VAL E 475 PHE E 476 -1 O PHE E 476 N LYS E 467 SHEET 1 AA3 2 TYR F 462 LYS F 468 0 SHEET 2 AA3 2 VAL F 475 GLU F 478 -1 O HIS F 477 N ILE F 463 SHEET 1 AA4 2 PHE G 437 HIS G 438 0 SHEET 2 AA4 2 VAL G 445 ILE G 446 -1 O ILE G 446 N PHE G 437 SHEET 1 AA5 2 LYS G 467 LYS G 468 0 SHEET 2 AA5 2 VAL G 475 PHE G 476 -1 O PHE G 476 N LYS G 467 LINK SG CYS E 439 ZN ZN E 501 1555 1555 2.35 LINK SG CYS E 442 ZN ZN E 501 1555 1555 2.35 LINK NE2 HIS E 455 ZN ZN E 501 1555 1555 2.04 LINK NE2 HIS E 460 ZN ZN E 501 1555 1555 2.02 LINK SG CYS E 469 ZN ZN E 502 1555 1555 2.36 LINK SG CYS E 472 ZN ZN E 502 1555 1555 2.29 LINK NE2 HIS E 485 ZN ZN E 502 1555 1555 2.03 LINK NE2 HIS E 489 ZN ZN E 502 1555 1555 2.07 LINK SG CYS F 439 ZN ZN F 501 1555 1555 2.30 LINK SG CYS F 442 ZN ZN F 501 1555 1555 2.30 LINK NE2 HIS F 455 ZN ZN F 501 1555 1555 2.07 LINK NE2 HIS F 460 ZN ZN F 501 1555 1555 2.02 LINK SG CYS F 469 ZN ZN F 502 1555 1555 2.33 LINK SG CYS F 472 ZN ZN F 502 1555 1555 2.26 LINK NE2 HIS F 485 ZN ZN F 502 1555 1555 2.03 LINK NE2 HIS F 489 ZN ZN F 502 1555 1555 2.03 LINK SG CYS G 409 ZN ZN G 503 1555 1555 2.26 LINK SG CYS G 412 ZN ZN G 503 1555 1555 2.28 LINK NE2 HIS G 425 ZN ZN G 503 1555 1555 2.04 LINK NE2 HIS G 430 ZN ZN G 503 1555 1555 2.02 LINK SG CYS G 439 ZN ZN G 501 1555 1555 2.32 LINK SG CYS G 442 ZN ZN G 501 1555 1555 2.27 LINK NE2 HIS G 455 ZN ZN G 501 1555 1555 2.06 LINK NE2 HIS G 460 ZN ZN G 501 1555 1555 2.02 LINK SG CYS G 469 ZN ZN G 502 1555 1555 2.41 LINK SG CYS G 472 ZN ZN G 502 1555 1555 2.33 LINK NE2 HIS G 485 ZN ZN G 502 1555 1555 2.06 LINK NE2 HIS G 489 ZN ZN G 502 1555 1555 2.05 SITE 1 AC1 4 CYS E 439 CYS E 442 HIS E 455 HIS E 460 SITE 1 AC2 4 CYS E 469 CYS E 472 HIS E 485 HIS E 489 SITE 1 AC3 4 CYS F 439 CYS F 442 HIS F 455 HIS F 460 SITE 1 AC4 4 CYS F 469 CYS F 472 HIS F 485 HIS F 489 SITE 1 AC5 4 CYS G 439 CYS G 442 HIS G 455 HIS G 460 SITE 1 AC6 4 CYS G 469 CYS G 472 HIS G 485 HIS G 489 SITE 1 AC7 4 CYS G 409 CYS G 412 HIS G 425 HIS G 430 CRYST1 126.792 52.397 69.135 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014464 0.00000