PDB Short entry for 5KE8 HEADER TRANSCRIPTION/DNA 09-JUN-16 5KE8 TITLE MOUSE KLF4 E446P ZNF1-3 AND MPG/MPG SEQUENCE DNA COMPLEX STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUEPPEL-LIKE FACTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 396-483; COMPND 5 SYNONYM: EPITHELIAL ZINC FINGER PROTEIN EZF,GUT-ENRICHED KRUEPPEL- COMPND 6 LIKE FACTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KLF4, EZF, GKLF, ZIE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS KLF4, ZINC FINGER, KRUPPEL-LIKE FACTORS, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 6 27-SEP-23 5KE8 1 REMARK REVDAT 5 25-DEC-19 5KE8 1 REMARK REVDAT 4 20-SEP-17 5KE8 1 REMARK REVDAT 3 14-DEC-16 5KE8 1 JRNL REVDAT 2 21-SEP-16 5KE8 1 JRNL REVDAT 1 14-SEP-16 5KE8 0 JRNL AUTH H.HASHIMOTO,D.WANG,A.N.STEVES,P.JIN,R.M.BLUMENTHAL,X.ZHANG, JRNL AUTH 2 X.CHENG JRNL TITL DISTINCTIVE KLF4 MUTANTS DETERMINE PREFERENCE FOR DNA JRNL TITL 2 METHYLATION STATUS. JRNL REF NUCLEIC ACIDS RES. V. 44 10177 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27596594 JRNL DOI 10.1093/NAR/GKW774 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2400: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.5 REMARK 3 NUMBER OF REFLECTIONS : 4788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.590 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6740 - 3.5334 1.00 2115 234 0.1981 0.2328 REMARK 3 2 3.5334 - 2.8049 0.92 1812 184 0.2780 0.3474 REMARK 3 3 2.8049 - 2.4504 0.21 402 41 0.4208 0.4227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1196 REMARK 3 ANGLE : 0.698 1678 REMARK 3 CHIRALITY : 0.035 168 REMARK 3 PLANARITY : 0.003 145 REMARK 3 DIHEDRAL : 29.899 458 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9349 -11.9189 1.3617 REMARK 3 T TENSOR REMARK 3 T11: 0.4409 T22: 0.4853 REMARK 3 T33: 0.4503 T12: -0.0940 REMARK 3 T13: 0.0572 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 8.0888 L22: 5.8272 REMARK 3 L33: 5.6736 L12: 0.0533 REMARK 3 L13: -1.4128 L23: -0.4612 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: 0.3494 S13: 0.9336 REMARK 3 S21: -0.4588 S22: 0.3856 S23: -0.1910 REMARK 3 S31: -0.6023 S32: 0.8539 S33: -0.2572 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4707 -31.0231 15.3571 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.3143 REMARK 3 T33: 0.3672 T12: -0.0256 REMARK 3 T13: -0.0197 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 5.9164 L22: 5.8212 REMARK 3 L33: 4.8517 L12: -0.8137 REMARK 3 L13: 1.4665 L23: -2.4563 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.3978 S13: -0.6002 REMARK 3 S21: 0.3961 S22: 0.2225 S23: 0.4459 REMARK 3 S31: -0.0710 S32: 0.1530 S33: -0.1956 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1576 -24.3821 8.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.3303 T22: 0.4441 REMARK 3 T33: 0.2490 T12: 0.0580 REMARK 3 T13: -0.0437 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 3.5833 L22: 3.5407 REMARK 3 L33: 3.6183 L12: 0.8240 REMARK 3 L13: -0.3058 L23: 0.6419 REMARK 3 S TENSOR REMARK 3 S11: 0.4263 S12: 0.0463 S13: 0.3907 REMARK 3 S21: 0.2128 S22: -0.2328 S23: -0.1694 REMARK 3 S31: 0.4712 S32: 0.6916 S33: -0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2319 -25.9079 9.6377 REMARK 3 T TENSOR REMARK 3 T11: 0.3731 T22: 0.6196 REMARK 3 T33: 0.3251 T12: -0.1089 REMARK 3 T13: 0.0168 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.4913 L22: 3.2396 REMARK 3 L33: 5.9995 L12: -0.7183 REMARK 3 L13: 0.7231 L23: 1.1748 REMARK 3 S TENSOR REMARK 3 S11: 0.4371 S12: -0.1139 S13: 0.0216 REMARK 3 S21: 0.0682 S22: 0.0643 S23: -0.1822 REMARK 3 S31: 0.2553 S32: 0.0783 S33: -0.4007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 35.674 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 4.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.5 , 0.25M NACL AND REMARK 280 20% POLYETHYLENE GLYCOL 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.24500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.22500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.86750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.22500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.62250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.22500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.22500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.86750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.22500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.22500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.62250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.24500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 391 REMARK 465 PRO A 392 REMARK 465 LEU A 393 REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 ARG A 396 REMARK 465 THR A 397 REMARK 465 ALA A 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 428 75.50 -150.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 CYS A 407 SG 111.3 REMARK 620 3 HIS A 420 NE2 110.6 89.6 REMARK 620 4 HIS A 424 NE2 104.5 119.9 120.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 432 SG REMARK 620 2 CYS A 437 SG 116.9 REMARK 620 3 HIS A 450 NE2 126.2 87.1 REMARK 620 4 HIS A 454 NE2 113.8 109.2 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 462 SG REMARK 620 2 CYS A 465 SG 116.5 REMARK 620 3 HIS A 478 NE2 114.5 98.1 REMARK 620 4 HIS A 482 NE2 118.1 111.7 94.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KEA RELATED DB: PDB REMARK 900 RELATED ID: 5KE9 RELATED DB: PDB REMARK 900 RELATED ID: 5KEB RELATED DB: PDB REMARK 900 RELATED ID: 5K5I RELATED DB: PDB REMARK 900 RELATED ID: 5K5J RELATED DB: PDB REMARK 900 RELATED ID: 5K5L RELATED DB: PDB REMARK 900 RELATED ID: 5K5H RELATED DB: PDB DBREF 5KE8 A 396 483 UNP Q60793 KLF4_MOUSE 396 483 DBREF 5KE8 B 1 10 PDB 5KE8 5KE8 1 10 DBREF 5KE8 C 1 10 PDB 5KE8 5KE8 1 10 SEQADV 5KE8 GLY A 391 UNP Q60793 EXPRESSION TAG SEQADV 5KE8 PRO A 392 UNP Q60793 EXPRESSION TAG SEQADV 5KE8 LEU A 393 UNP Q60793 EXPRESSION TAG SEQADV 5KE8 GLY A 394 UNP Q60793 EXPRESSION TAG SEQADV 5KE8 SER A 395 UNP Q60793 EXPRESSION TAG SEQADV 5KE8 PRO A 446 UNP Q60793 GLU 446 ENGINEERED MUTATION SEQRES 1 A 93 GLY PRO LEU GLY SER ARG THR ALA THR HIS THR CYS ASP SEQRES 2 A 93 TYR ALA GLY CYS GLY LYS THR TYR THR LYS SER SER HIS SEQRES 3 A 93 LEU LYS ALA HIS LEU ARG THR HIS THR GLY GLU LYS PRO SEQRES 4 A 93 TYR HIS CYS ASP TRP ASP GLY CYS GLY TRP LYS PHE ALA SEQRES 5 A 93 ARG SER ASP PRO LEU THR ARG HIS TYR ARG LYS HIS THR SEQRES 6 A 93 GLY HIS ARG PRO PHE GLN CYS GLN LYS CYS ASP ARG ALA SEQRES 7 A 93 PHE SER ARG SER ASP HIS LEU ALA LEU HIS MET LYS ARG SEQRES 8 A 93 HIS PHE SEQRES 1 B 10 DG DA DG DG 5CM DG DT DG DG DC SEQRES 1 C 10 DG DC DC DA 5CM DG DC DC DT DC HET 5CM B 5 33 HET 5CM C 5 33 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 2 5CM 2(C10 H16 N3 O7 P) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *9(H2 O) HELIX 1 AA1 LYS A 413 GLY A 426 1 14 HELIX 2 AA2 ARG A 443 GLY A 456 1 14 HELIX 3 AA3 ARG A 471 LYS A 480 1 10 HELIX 4 AA4 ARG A 481 PHE A 483 5 3 SHEET 1 AA1 2 HIS A 400 THR A 401 0 SHEET 2 AA1 2 THR A 410 TYR A 411 -1 O TYR A 411 N HIS A 400 SHEET 1 AA2 2 TYR A 430 HIS A 431 0 SHEET 2 AA2 2 LYS A 440 PHE A 441 -1 O PHE A 441 N TYR A 430 SHEET 1 AA3 2 PHE A 460 GLN A 461 0 SHEET 2 AA3 2 ALA A 468 PHE A 469 -1 O PHE A 469 N PHE A 460 LINK O3' DG B 4 P 5CM B 5 1555 1555 1.61 LINK O3' 5CM B 5 P DG B 6 1555 1555 1.61 LINK O3' DA C 4 P 5CM C 5 1555 1555 1.61 LINK O3' 5CM C 5 P DG C 6 1555 1555 1.61 LINK SG CYS A 402 ZN ZN A 503 1555 1555 2.33 LINK SG CYS A 407 ZN ZN A 503 1555 1555 2.28 LINK NE2 HIS A 420 ZN ZN A 503 1555 1555 2.05 LINK NE2 HIS A 424 ZN ZN A 503 1555 1555 2.04 LINK SG CYS A 432 ZN ZN A 502 1555 1555 2.22 LINK SG CYS A 437 ZN ZN A 502 1555 1555 2.22 LINK NE2 HIS A 450 ZN ZN A 502 1555 1555 2.02 LINK NE2 HIS A 454 ZN ZN A 502 1555 1555 2.04 LINK SG CYS A 462 ZN ZN A 501 1555 1555 2.28 LINK SG CYS A 465 ZN ZN A 501 1555 1555 2.26 LINK NE2 HIS A 478 ZN ZN A 501 1555 1555 2.03 LINK NE2 HIS A 482 ZN ZN A 501 1555 1555 2.03 SITE 1 AC1 4 CYS A 462 CYS A 465 HIS A 478 HIS A 482 SITE 1 AC2 4 CYS A 432 CYS A 437 HIS A 450 HIS A 454 SITE 1 AC3 4 CYS A 402 CYS A 407 HIS A 420 HIS A 424 CRYST1 50.450 50.450 130.490 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019822 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007663 0.00000