PDB Short entry for 5KEA HEADER TRANSCRIPTION FACTOR/DNA 09-JUN-16 5KEA TITLE MOUSE KLF4 ZNF1-3 (E446D) AND CPG/CPG SEQUENCE DNA COMPLEX STRUCTURE: TITLE 2 FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUEPPEL-LIKE FACTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 396-483; COMPND 5 SYNONYM: EPITHELIAL ZINC FINGER PROTEIN EZF,GUT-ENRICHED KRUEPPEL- COMPND 6 LIKE FACTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*GP*AP*GP*GP*CP*GP*TP*GP*GP*C)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*CP*GP*CP*CP*TP*C)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KLF4, EZF, GKLF, ZIE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-11; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC1411; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS KLF4, ZINC FINGER, UNMETHYLATED CYTOSINE SPECIFIC, TRANSCRIPTION KEYWDS 2 FACTOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 7 27-SEP-23 5KEA 1 REMARK REVDAT 6 25-DEC-19 5KEA 1 REMARK REVDAT 5 03-JAN-18 5KEA 1 TITLE REVDAT 4 20-SEP-17 5KEA 1 REMARK REVDAT 3 14-DEC-16 5KEA 1 JRNL REVDAT 2 21-SEP-16 5KEA 1 JRNL REVDAT 1 14-SEP-16 5KEA 0 JRNL AUTH H.HASHIMOTO,D.WANG,A.N.STEVES,P.JIN,R.M.BLUMENTHAL,X.ZHANG, JRNL AUTH 2 X.CHENG JRNL TITL DISTINCTIVE KLF4 MUTANTS DETERMINE PREFERENCE FOR DNA JRNL TITL 2 METHYLATION STATUS. JRNL REF NUCLEIC ACIDS RES. V. 44 10177 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27596594 JRNL DOI 10.1093/NAR/GKW774 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2400: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.2 REMARK 3 NUMBER OF REFLECTIONS : 5174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4000 - 3.9015 0.99 1605 179 0.1913 0.2355 REMARK 3 2 3.9015 - 3.0969 0.99 1495 166 0.2318 0.3135 REMARK 3 3 3.0969 - 2.7055 0.85 1264 140 0.3314 0.3612 REMARK 3 4 2.7055 - 2.4582 0.20 292 33 0.4140 0.5378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1207 REMARK 3 ANGLE : 0.540 1690 REMARK 3 CHIRALITY : 0.036 173 REMARK 3 PLANARITY : 0.002 147 REMARK 3 DIHEDRAL : 23.046 458 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6697 -13.6071 -7.1851 REMARK 3 T TENSOR REMARK 3 T11: 0.7477 T22: 0.9080 REMARK 3 T33: 0.9275 T12: -0.0615 REMARK 3 T13: 0.1674 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.6249 L22: 4.7898 REMARK 3 L33: 7.9028 L12: 0.1319 REMARK 3 L13: -0.3154 L23: -3.7121 REMARK 3 S TENSOR REMARK 3 S11: -0.1366 S12: -0.4039 S13: 0.5489 REMARK 3 S21: -1.7964 S22: -0.6184 S23: -0.3592 REMARK 3 S31: 0.7268 S32: 1.4597 S33: 0.4112 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5023 -4.6089 1.3813 REMARK 3 T TENSOR REMARK 3 T11: 0.8630 T22: 0.8259 REMARK 3 T33: 0.9094 T12: -0.3627 REMARK 3 T13: -0.1620 T23: 0.0997 REMARK 3 L TENSOR REMARK 3 L11: 3.8782 L22: 5.3409 REMARK 3 L33: 1.6368 L12: -2.9845 REMARK 3 L13: -2.4355 L23: 1.2971 REMARK 3 S TENSOR REMARK 3 S11: -0.4171 S12: -0.4412 S13: 1.4414 REMARK 3 S21: -0.5627 S22: 1.0000 S23: -0.9542 REMARK 3 S31: 0.6980 S32: 0.0648 S33: -0.1759 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1643 -15.0068 0.7117 REMARK 3 T TENSOR REMARK 3 T11: 0.4595 T22: 0.8225 REMARK 3 T33: 0.6389 T12: -0.2670 REMARK 3 T13: -0.2343 T23: 0.1493 REMARK 3 L TENSOR REMARK 3 L11: 1.7941 L22: 3.1872 REMARK 3 L33: 4.0281 L12: -0.9037 REMARK 3 L13: -1.1256 L23: -0.9385 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: 0.0567 S13: 0.5940 REMARK 3 S21: -0.3080 S22: -0.7808 S23: 0.4110 REMARK 3 S31: -0.4666 S32: 0.8808 S33: -1.0965 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 414 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7297 -13.5334 0.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.5734 T22: 0.5460 REMARK 3 T33: 0.4178 T12: -0.1405 REMARK 3 T13: -0.0980 T23: -0.0950 REMARK 3 L TENSOR REMARK 3 L11: 3.3078 L22: 3.3435 REMARK 3 L33: 0.6297 L12: 0.4503 REMARK 3 L13: -1.3789 L23: -0.6586 REMARK 3 S TENSOR REMARK 3 S11: -0.1737 S12: 0.5298 S13: 0.5056 REMARK 3 S21: -0.3068 S22: -0.2239 S23: 0.8941 REMARK 3 S31: 0.7330 S32: -0.3849 S33: 0.4431 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3254 -20.9049 9.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.2787 REMARK 3 T33: 0.3038 T12: -0.0039 REMARK 3 T13: -0.0169 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.8557 L22: 3.8436 REMARK 3 L33: 1.9085 L12: -0.4370 REMARK 3 L13: 0.4052 L23: -1.4749 REMARK 3 S TENSOR REMARK 3 S11: -0.2012 S12: -0.0772 S13: -0.0500 REMARK 3 S21: -0.1441 S22: 0.3578 S23: 0.1459 REMARK 3 S31: 0.1991 S32: -0.2926 S33: -0.2507 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6538 -36.6905 13.9630 REMARK 3 T TENSOR REMARK 3 T11: 0.6329 T22: 0.5498 REMARK 3 T33: 0.6474 T12: -0.0706 REMARK 3 T13: -0.1343 T23: -0.1767 REMARK 3 L TENSOR REMARK 3 L11: 8.0179 L22: 3.8926 REMARK 3 L33: 1.7154 L12: -3.4709 REMARK 3 L13: -1.3648 L23: 0.1734 REMARK 3 S TENSOR REMARK 3 S11: 0.9258 S12: -1.0703 S13: -0.4445 REMARK 3 S21: 0.6757 S22: -0.2672 S23: -0.4977 REMARK 3 S31: 1.2557 S32: 0.2493 S33: -0.5902 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 461 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7851 -45.4704 19.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.7885 T22: 0.7789 REMARK 3 T33: 0.8650 T12: -0.0430 REMARK 3 T13: 0.0997 T23: 0.2164 REMARK 3 L TENSOR REMARK 3 L11: 0.6454 L22: 2.6587 REMARK 3 L33: 1.7952 L12: 0.7357 REMARK 3 L13: -0.4048 L23: 1.1467 REMARK 3 S TENSOR REMARK 3 S11: -0.4412 S12: -0.4138 S13: -0.8977 REMARK 3 S21: -1.6035 S22: 0.9783 S23: 0.2165 REMARK 3 S31: 0.7362 S32: 0.4604 S33: -0.6341 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0717 -37.1161 18.8289 REMARK 3 T TENSOR REMARK 3 T11: 0.4375 T22: 0.5934 REMARK 3 T33: 0.5572 T12: 0.0815 REMARK 3 T13: -0.0355 T23: 0.2631 REMARK 3 L TENSOR REMARK 3 L11: 1.1081 L22: 7.0026 REMARK 3 L33: 8.2601 L12: 1.3002 REMARK 3 L13: -2.7269 L23: -6.0927 REMARK 3 S TENSOR REMARK 3 S11: 0.2670 S12: -0.9930 S13: -0.7370 REMARK 3 S21: 1.5516 S22: 0.5651 S23: 1.0362 REMARK 3 S31: -0.8977 S32: -0.0344 S33: -0.5495 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 472 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3784 -37.5512 20.9894 REMARK 3 T TENSOR REMARK 3 T11: 0.6109 T22: 0.6785 REMARK 3 T33: 0.4142 T12: 0.0952 REMARK 3 T13: -0.0341 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 4.2402 L22: 5.0423 REMARK 3 L33: 5.5683 L12: -2.3552 REMARK 3 L13: 2.7354 L23: -2.7072 REMARK 3 S TENSOR REMARK 3 S11: -0.0987 S12: -1.1369 S13: 0.4099 REMARK 3 S21: 0.2219 S22: 0.5560 S23: -0.5137 REMARK 3 S31: 0.7219 S32: -0.3648 S33: -0.5992 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1957 -24.7023 8.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.3894 T22: 0.5283 REMARK 3 T33: 0.2602 T12: 0.0058 REMARK 3 T13: -0.0304 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.6619 L22: 1.5831 REMARK 3 L33: 1.7258 L12: -0.3003 REMARK 3 L13: 0.8527 L23: 0.7367 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: 0.1343 S13: -0.0023 REMARK 3 S21: -0.1958 S22: -0.0408 S23: 0.2310 REMARK 3 S31: 0.3677 S32: 0.4799 S33: 0.0360 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0937 -26.1764 8.8455 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.7225 REMARK 3 T33: 0.3599 T12: -0.0323 REMARK 3 T13: 0.0227 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.1246 L22: 2.3960 REMARK 3 L33: 4.6307 L12: 0.2380 REMARK 3 L13: 0.9622 L23: 0.4230 REMARK 3 S TENSOR REMARK 3 S11: 0.2790 S12: 0.0494 S13: -0.0587 REMARK 3 S21: 0.0037 S22: -0.0380 S23: 0.0822 REMARK 3 S31: 0.7602 S32: -0.3471 S33: -0.1764 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 7.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.5 , 0.25M NACL AND REMARK 280 20% POLYETHYLENE GLYCOL 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.42500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.28750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.76250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 98.28750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.76250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 391 REMARK 465 PRO A 392 REMARK 465 LEU A 393 REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 ARG A 396 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 CYS A 465 ZN ZN A 503 1.45 REMARK 500 OP2 DG B 3 O HOH B 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 407 -159.11 -87.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 CYS A 407 SG 108.8 REMARK 620 3 HIS A 420 NE2 110.7 91.9 REMARK 620 4 HIS A 424 NE2 92.9 146.8 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 432 SG REMARK 620 2 CYS A 437 SG 121.4 REMARK 620 3 HIS A 450 NE2 106.5 98.5 REMARK 620 4 HIS A 454 NE2 119.4 105.0 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 462 SG REMARK 620 2 CYS A 465 SG 131.7 REMARK 620 3 HIS A 478 NE2 100.4 121.8 REMARK 620 4 HIS A 482 NE2 98.0 114.9 73.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KE6 RELATED DB: PDB REMARK 900 RELATED ID: 5KE7 RELATED DB: PDB REMARK 900 RELATED ID: 5KE8 RELATED DB: PDB REMARK 900 RELATED ID: 5KE9 RELATED DB: PDB REMARK 900 RELATED ID: 5KEB RELATED DB: PDB DBREF 5KEA A 396 483 UNP Q60793 KLF4_MOUSE 396 483 DBREF 5KEA B 1 10 PDB 5KEA 5KEA 1 10 DBREF 5KEA C 1 10 PDB 5KEA 5KEA 1 10 SEQADV 5KEA GLY A 391 UNP Q60793 EXPRESSION TAG SEQADV 5KEA PRO A 392 UNP Q60793 EXPRESSION TAG SEQADV 5KEA LEU A 393 UNP Q60793 EXPRESSION TAG SEQADV 5KEA GLY A 394 UNP Q60793 EXPRESSION TAG SEQADV 5KEA SER A 395 UNP Q60793 EXPRESSION TAG SEQADV 5KEA ASP A 446 UNP Q60793 GLU 446 ENGINEERED MUTATION SEQRES 1 A 93 GLY PRO LEU GLY SER ARG THR ALA THR HIS THR CYS ASP SEQRES 2 A 93 TYR ALA GLY CYS GLY LYS THR TYR THR LYS SER SER HIS SEQRES 3 A 93 LEU LYS ALA HIS LEU ARG THR HIS THR GLY GLU LYS PRO SEQRES 4 A 93 TYR HIS CYS ASP TRP ASP GLY CYS GLY TRP LYS PHE ALA SEQRES 5 A 93 ARG SER ASP ASP LEU THR ARG HIS TYR ARG LYS HIS THR SEQRES 6 A 93 GLY HIS ARG PRO PHE GLN CYS GLN LYS CYS ASP ARG ALA SEQRES 7 A 93 PHE SER ARG SER ASP HIS LEU ALA LEU HIS MET LYS ARG SEQRES 8 A 93 HIS PHE SEQRES 1 B 10 DG DA DG DG DC DG DT DG DG DC SEQRES 1 C 10 DG DC DC DA DC DG DC DC DT DC HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *15(H2 O) HELIX 1 AA1 LYS A 413 THR A 425 1 13 HELIX 2 AA2 ARG A 443 GLY A 456 1 14 HELIX 3 AA3 ARG A 471 LYS A 480 1 10 HELIX 4 AA4 ARG A 481 PHE A 483 5 3 SHEET 1 AA1 2 HIS A 400 THR A 401 0 SHEET 2 AA1 2 THR A 410 TYR A 411 -1 O TYR A 411 N HIS A 400 SHEET 1 AA2 2 TYR A 430 HIS A 431 0 SHEET 2 AA2 2 LYS A 440 PHE A 441 -1 O PHE A 441 N TYR A 430 SHEET 1 AA3 2 PHE A 460 GLN A 461 0 SHEET 2 AA3 2 ALA A 468 PHE A 469 -1 O PHE A 469 N PHE A 460 LINK SG CYS A 402 ZN ZN A 501 1555 1555 2.24 LINK SG CYS A 407 ZN ZN A 501 1555 1555 2.08 LINK NE2 HIS A 420 ZN ZN A 501 1555 1555 2.03 LINK NE2 HIS A 424 ZN ZN A 501 1555 1555 2.02 LINK SG CYS A 432 ZN ZN A 502 1555 1555 2.25 LINK SG CYS A 437 ZN ZN A 502 1555 1555 2.25 LINK NE2 HIS A 450 ZN ZN A 502 1555 1555 2.02 LINK NE2 HIS A 454 ZN ZN A 502 1555 1555 2.02 LINK SG CYS A 462 ZN ZN A 503 1555 1555 2.39 LINK SG CYS A 465 ZN ZN A 503 1555 1555 2.93 LINK NE2 HIS A 478 ZN ZN A 503 1555 1555 2.03 LINK NE2 HIS A 482 ZN ZN A 503 1555 1555 2.04 SITE 1 AC1 4 CYS A 402 CYS A 407 HIS A 420 HIS A 424 SITE 1 AC2 4 CYS A 432 CYS A 437 HIS A 450 HIS A 454 SITE 1 AC3 4 CYS A 462 CYS A 465 HIS A 478 HIS A 482 CRYST1 50.850 50.850 131.050 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007631 0.00000