PDB Short entry for 5KGF HEADER STRUCTURAL PROTEIN/DNA 13-JUN-16 5KGF TITLE STRUCTURAL MODEL OF 53BP1 BOUND TO A UBIQUITYLATED AND METHYLATED TITLE 2 NUCLEOSOME, AT 4.5 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.2; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: HISTONE H3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 SYNONYM: HISTONE H4KC20ME2; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 OTHER_DETAILS: CYSTEINE ALKYLATION AT POSITION 20; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: HISTONE H2A TYPE 1; COMPND 15 CHAIN: C, G; COMPND 16 SYNONYM: H2A.1, HISTONE H2A/P; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 OTHER_DETAILS: ISOPEPTIDE AMIDE CROSSLINK BETWEEN K15 OF H2A AND G76 COMPND 20 OF UBIQUITIN; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: HISTONE H2B TYPE 1-C/E/F/G/I; COMPND 23 CHAIN: D, H; COMPND 24 SYNONYM: HISTONE H2B.1 A, HISTONE H2B.A, H2B/A, HISTONE H2B.G, H2B/G, COMPND 25 HISTONE H2B.H, H2B/H, HISTONE H2B.K, H2B/K, HISTONE H2B.L, H2B/L; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 5; COMPND 28 MOLECULE: DNA (145-MER); COMPND 29 CHAIN: I; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 6; COMPND 32 MOLECULE: DNA (145-MER); COMPND 33 CHAIN: J; COMPND 34 ENGINEERED: YES; COMPND 35 MOL_ID: 7; COMPND 36 MOLECULE: TUMOR SUPPRESSOR P53-BINDING PROTEIN 1; COMPND 37 CHAIN: L, K; COMPND 38 ENGINEERED: YES; COMPND 39 OTHER_DETAILS: FULL PROTEIN NOT MODELED; COMPND 40 MOL_ID: 8; COMPND 41 MOLECULE: UBIQUITIN; COMPND 42 CHAIN: O, M; COMPND 43 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 9 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 10 ORGANISM_TAXID: 8355; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: HIST1H2AG, H2AFP, HIST1H2AI, H2AFC, HIST1H2AK, H2AFD, SOURCE 18 HIST1H2AL, H2AFI, HIST1H2AM, H2AFN; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: HIST1H2BC, H2BFL, HIST1H2BE, H2BFH, HIST1H2BF, H2BFG, SOURCE 26 HIST1H2BG, H2BFA, HIST1H2BI, H2BFK; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 31 ORGANISM_TAXID: 32630; SOURCE 32 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 34 MOL_ID: 6; SOURCE 35 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 36 ORGANISM_TAXID: 32630; SOURCE 37 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 38 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 39 MOL_ID: 7; SOURCE 40 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 41 ORGANISM_COMMON: HUMAN; SOURCE 42 ORGANISM_TAXID: 9606; SOURCE 43 GENE: TP53BP1; SOURCE 44 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 45 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 46 MOL_ID: 8; SOURCE 47 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 48 ORGANISM_COMMON: HUMAN; SOURCE 49 ORGANISM_TAXID: 9606; SOURCE 50 GENE: UBB; SOURCE 51 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 52 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA, CHROMATIN, 53BP1, STRUCTURAL PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR M.D.WILSON,S.BENLEKBIR,F.SICHERI,J.L.RUBINSTEIN,D.DUROCHER REVDAT 6 15-JAN-20 5KGF 1 REMARK REVDAT 5 18-JUL-18 5KGF 1 REMARK REVDAT 4 13-SEP-17 5KGF 1 JRNL REMARK REVDAT 3 17-AUG-16 5KGF 1 JRNL REVDAT 2 10-AUG-16 5KGF 1 JRNL REVDAT 1 27-JUL-16 5KGF 0 JRNL AUTH M.D.WILSON,S.BENLEKBIR,A.FRADET-TURCOTTE,A.SHERKER, JRNL AUTH 2 J.P.JULIEN,A.MCEWAN,S.M.NOORDERMEER,F.SICHERI, JRNL AUTH 3 J.L.RUBINSTEIN,D.DUROCHER JRNL TITL THE STRUCTURAL BASIS OF MODIFIED NUCLEOSOME RECOGNITION BY JRNL TITL 2 53BP1. JRNL REF NATURE V. 536 100 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27462807 JRNL DOI 10.1038/NATURE18951 REMARK 2 REMARK 2 RESOLUTION. 4.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : DIGITALMICROGRAPH, CTFFIND, UCSF REMARK 3 CHIMERA, PHENIX, RELION, RELION, RELION, REMARK 3 RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 207.500 REMARK 3 REMARK 3 FITTING PROCEDURE : THE ATOMIC MODELS OF WIDOM-601 DNA (PDB ID REMARK 3 3LZ0), OCTAMERIC HISTONES (PDB ID 1KX5), UBIQUITIN (PDB ID 1UBI), REMARK 3 AND H4K20ME2/53BP1 TANDEM TUDOR DOMAIN (PDB ID 2IG0) WERE REMARK 3 FITTED WITHOUT ALLOWING FLEXIBILITY INTO THE 3D MAPS USING UCSF REMARK 3 CHIMERA. SEGMENTATION WAS PERFORMED IN UCSF CHIMERA. FOR THE NCP- REMARK 3 UBME STRUCTURE THE UBIQUITIN SEGMENTATION WAS FURTHER MODIFIED REMARK 3 TO REMOVE OBVIOUS NCP DENSITY FROM THE UBIQUITIN SEGMENT. THE REMARK 3 H2A/H2B SEQUENCE WAS MUTATED TO THE HUMAN H2AK13R/K36R AND H2B REMARK 3 MANUALLY IN UCSF CHIMERA. A POLYALANINE MODEL OF THE UDR WAS REMARK 3 BUILT WITHIN THE UDR DENSITY IN COOT, WHICH COMPARED WELL TO REMARK 3 PREDICTED STRUCTURES GENERATED BY ROSETTA. THE UDR MODEL WAS REMARK 3 MUTATED AND FITTED USING UCSF CHIMERA, FOLLOWED BY ITERATIVE REMARK 3 ROUNDS OF REAL-SPACE REFINEMENT IN PHENIX AND MODEL OPTIMIZATION REMARK 3 IN COOT. ALL FIGURES WERE PREPARED IN UCSF CHIMERA. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.540 REMARK 3 NUMBER OF PARTICLES : 45361 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5KGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221483. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NCP-UBME/GST-53BP1 COMPLEX; NCP REMARK 245 -UBME; WIDOM-601 DNA; GST-53BP1; REMARK 245 UBIQUITYLATED METHYLATED REMARK 245 HISTONE OCTAMER; HISTONE REMARK 245 H4KC20ME2; HISTONE H3; HISTONE REMARK 245 H2B.1; HISTONE H2A.1 K13RK36R; REMARK 245 UBIQUITIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.60 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : PLUNGED INTO LIQUID ETHANE REMARK 245 -PROPANE (FEI VITROBOT MARK III) REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : SINGLE-PARTICLE REMARK 245 ELECTROCRYOMICROSCOPY STRUCTURE OF TANDEM TUDOR DOMAIN AND UDR REMARK 245 REGION OF HUMAN 53BP1 BOUND TO A RECOMBINANT UBIQUITYLATED AND REMARK 245 METHYLATED NUCLEOSOME CORE PARTICLE; MODIFIED NUCLEOSOME CORE REMARK 245 PARTICLE, H2A ENZYMATICALLY UBIQUITYLATED ON H2A K15, H4 REMARK 245 CHEMICALLY ALKYLATED AT K20C TO CREATE DIMETHYL LYSINE ANALOG; REMARK 245 145 BP FRAGMENT OF WIDOM-601 STRONG NUCLESOME POSITIONING REMARK 245 SEQUENCE, GIFT FROM CURT DAVEY (VASUDEVAN ET. AL, 2010, REMARK 245 J.MOL.BIOL.); 53BP1 TANDEM TUDOR DOMAIN AND UBIQUITIN DEPENDENT REMARK 245 RECRUITMENT REGION, ARTIFICIALLY DIMERIZED WITH GLUTHAIONE-S- REMARK 245 TRANSFERASE (GST, NOT VISIBLE IN STRUCTURE); DIMETHYLATED AT REMARK 245 POSITION 20; CROSSLINKED AT H2AK15 TO UBIQUITIN AT UB G76 REMARK 245 (ISOPEPTIDE BOND); CROSSLINKED TO H2A K15 (ISOPEPTIDE BOND) REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 319 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 36.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 25000 REMARK 245 CALIBRATED MAGNIFICATION : 34483 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: L, O, M, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 SER C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 LYS C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 GLY C 128 REMARK 465 LYS C 129 REMARK 465 MET D -3 REMARK 465 PRO D -2 REMARK 465 GLU D -1 REMARK 465 PRO D 0 REMARK 465 ALA D 1 REMARK 465 LYS D 2 REMARK 465 SER D 3 REMARK 465 ALA D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 LYS D 8 REMARK 465 LYS D 9 REMARK 465 GLY D 10 REMARK 465 SER D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 VAL D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 ALA D 18 REMARK 465 GLN D 19 REMARK 465 LYS D 20 REMARK 465 LYS D 21 REMARK 465 ASP D 22 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 MET G 0 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 SER G 122 REMARK 465 HIS G 123 REMARK 465 HIS G 124 REMARK 465 LYS G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 GLY G 128 REMARK 465 LYS G 129 REMARK 465 MET H -3 REMARK 465 PRO H -2 REMARK 465 GLU H -1 REMARK 465 PRO H 0 REMARK 465 ALA H 1 REMARK 465 LYS H 2 REMARK 465 SER H 3 REMARK 465 ALA H 4 REMARK 465 PRO H 5 REMARK 465 ALA H 6 REMARK 465 PRO H 7 REMARK 465 LYS H 8 REMARK 465 LYS H 9 REMARK 465 GLY H 10 REMARK 465 SER H 11 REMARK 465 LYS H 12 REMARK 465 LYS H 13 REMARK 465 ALA H 14 REMARK 465 VAL H 15 REMARK 465 THR H 16 REMARK 465 LYS H 17 REMARK 465 ALA H 18 REMARK 465 GLN H 19 REMARK 465 LYS H 20 REMARK 465 LYS H 21 REMARK 465 ASP H 22 REMARK 465 GLY H 23 REMARK 465 LYS H 24 REMARK 465 LYS H 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG H 26 O3' DC J 30 1.24 REMARK 500 CG1 VAL A 46 OP2 DT J 9 1.35 REMARK 500 NH2 ARG E 63 C4' DA I 17 1.53 REMARK 500 NH2 ARG E 63 O4' DA I 17 1.55 REMARK 500 CD1 ILE L 1617 CD2 HIS M 68 1.56 REMARK 500 O ARG G 11 N ARG G 13 1.84 REMARK 500 NZ LYS C 15 O GLY M 76 1.84 REMARK 500 CZ ARG C 11 O2 DT I -42 1.91 REMARK 500 CG1 VAL A 46 P DT J 9 1.93 REMARK 500 N VAL A 117 OP1 DG I -3 2.03 REMARK 500 CD1 ILE L 1617 CG HIS M 68 2.04 REMARK 500 OH TYR H 37 OP1 DG I 48 2.06 REMARK 500 O ARG H 26 C3' DC J 30 2.06 REMARK 500 N SER H 84 OP1 DA J -34 2.08 REMARK 500 O ASN F 25 N GLY F 28 2.08 REMARK 500 O ASN B 25 N GLY B 28 2.08 REMARK 500 OE1 GLU B 74 OG1 THR L 1612 2.09 REMARK 500 OH TYR E 41 C5' DA I -66 2.09 REMARK 500 NH2 ARG C 42 O4' DG J 38 2.09 REMARK 500 CA ARG H 26 OP1 DT J 31 2.10 REMARK 500 OE1 GLU F 74 OG1 THR K 1612 2.12 REMARK 500 OD2 ASP G 90 NH2 ARG K 1627 2.13 REMARK 500 N ILE B 46 OP1 DG J 8 2.14 REMARK 500 C ARG H 26 O3' DC J 30 2.15 REMARK 500 OG1 THR D 87 OE1 GLU D 90 2.15 REMARK 500 OG1 THR H 87 OE1 GLU H 90 2.15 REMARK 500 NH2 ARG O 42 O LYS O 48 2.16 REMARK 500 NH2 ARG M 42 O LYS M 48 2.16 REMARK 500 N ARG E 42 OP1 DG J 70 2.17 REMARK 500 NZ LYS B 59 OE2 GLU B 63 2.17 REMARK 500 NZ LYS F 59 OE2 GLU F 63 2.17 REMARK 500 N LYS O 6 O LEU O 67 2.19 REMARK 500 N LYS M 6 O LEU M 67 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA I -72 O5' DA I -72 C5' 0.209 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT I -71 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC I -70 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA I -69 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC I -63 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC I -63 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DG I -60 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG I -53 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DC I -51 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DG I -49 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG I -49 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT I -47 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA I -45 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA I -44 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG I -40 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT I -39 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT I -36 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG I -34 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG I -34 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC I -32 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC I -32 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA I -31 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG I -30 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DA I -22 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC I -21 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG I -19 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC I -18 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT I -17 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT I -16 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA I -15 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA I -13 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DC I -12 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DG I -11 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC I -8 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA I -5 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA I -5 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC I -2 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT I 1 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT I 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC I 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC I 10 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT I 12 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT I 13 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT I 14 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA I 16 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC I 18 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG I 20 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC I 22 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA I 23 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DG I 27 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA I 29 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 145 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 37 81.28 53.58 REMARK 500 LYS A 64 -70.31 -55.48 REMARK 500 ASP A 81 72.79 58.86 REMARK 500 CYS A 110 -70.75 -55.26 REMARK 500 ARG A 134 -74.23 -82.74 REMARK 500 M2L B 20 -91.61 -101.54 REMARK 500 VAL B 21 157.91 173.77 REMARK 500 LEU B 22 74.70 58.53 REMARK 500 ARG B 23 -75.18 -88.06 REMARK 500 ASP B 24 -60.21 -132.60 REMARK 500 ASN B 25 -109.08 58.35 REMARK 500 GLU B 52 -71.91 -59.77 REMARK 500 GLU B 63 -70.89 -54.91 REMARK 500 ALA C 10 75.25 57.15 REMARK 500 ALA C 12 -21.17 80.06 REMARK 500 ARG C 13 -101.30 -133.66 REMARK 500 ALA C 14 153.92 162.30 REMARK 500 PRO C 117 -166.07 -68.92 REMARK 500 LYS C 118 -134.21 70.52 REMARK 500 LYS C 119 0.64 92.66 REMARK 500 THR C 120 -15.57 84.84 REMARK 500 LYS D 24 51.39 31.46 REMARK 500 SER D 121 -179.08 -68.51 REMARK 500 LYS E 64 -72.78 -52.21 REMARK 500 ASP E 81 72.86 58.96 REMARK 500 CYS E 110 -70.98 -55.17 REMARK 500 ARG E 134 -72.53 -83.33 REMARK 500 M2L F 20 -113.83 56.19 REMARK 500 ARG F 23 -154.34 -145.67 REMARK 500 ASP F 24 -60.18 -26.74 REMARK 500 ASN F 25 -109.05 58.35 REMARK 500 GLU F 52 -71.96 -59.65 REMARK 500 GLU F 63 -70.95 -54.92 REMARK 500 ALA G 12 -28.33 68.87 REMARK 500 ARG G 13 -105.02 -159.30 REMARK 500 ALA G 14 148.85 140.44 REMARK 500 ALA L1615 66.72 70.89 REMARK 500 ASN L1621 149.35 176.69 REMARK 500 LEU L1622 61.67 -103.48 REMARK 500 ALA K1615 66.85 70.53 REMARK 500 ASN K1621 149.39 176.65 REMARK 500 LEU K1622 61.59 -103.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS C 118 LYS C 119 -137.13 REMARK 500 GLY D 23 LYS D 24 117.45 REMARK 500 LYS D 25 ARG D 26 149.44 REMARK 500 ARG F 23 ASP F 24 -140.45 REMARK 500 ALA G 10 ARG G 11 132.77 REMARK 500 ARG G 11 ALA G 12 140.09 REMARK 500 LYS G 118 LYS G 119 147.69 REMARK 500 ARG H 26 LYS H 27 -130.73 REMARK 500 ARG H 28 SER H 29 -115.57 REMARK 500 ASP L 1620 ASN L 1621 118.72 REMARK 500 ASP K 1620 ASN K 1621 118.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG D 26 -15.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8246 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-8247 RELATED DB: EMDB DBREF 5KGF A 0 135 UNP P84233 H32_XENLA 1 136 DBREF 5KGF B 0 102 UNP P62799 H4_XENLA 1 103 DBREF 5KGF C 0 129 UNP P0C0S8 H2A1_HUMAN 1 130 DBREF 5KGF D -3 122 UNP P62807 H2B1C_HUMAN 1 126 DBREF 5KGF E 0 135 UNP P84233 H32_XENLA 1 136 DBREF 5KGF F 0 102 UNP P62799 H4_XENLA 1 103 DBREF 5KGF G 0 129 UNP P0C0S8 H2A1_HUMAN 1 130 DBREF 5KGF H -3 122 UNP P62807 H2B1C_HUMAN 1 126 DBREF 5KGF I -72 72 PDB 5KGF 5KGF -72 72 DBREF 5KGF J -72 72 PDB 5KGF 5KGF -72 72 DBREF 5KGF L 1611 1631 UNP H7BZY0 H7BZY0_HUMAN 79 99 DBREF 5KGF O 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5KGF M 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5KGF K 1611 1631 UNP H7BZY0 H7BZY0_HUMAN 79 99 SEQADV 5KGF ARG C 13 UNP P0C0S8 LYS 14 ENGINEERED MUTATION SEQADV 5KGF SER C 16 UNP P0C0S8 THR 17 ENGINEERED MUTATION SEQADV 5KGF ARG C 36 UNP P0C0S8 LYS 37 ENGINEERED MUTATION SEQADV 5KGF ARG G 13 UNP P0C0S8 LYS 14 ENGINEERED MUTATION SEQADV 5KGF SER G 16 UNP P0C0S8 THR 17 ENGINEERED MUTATION SEQADV 5KGF ARG G 36 UNP P0C0S8 LYS 37 ENGINEERED MUTATION SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG M2L VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA SEQRES 2 C 130 ARG ALA LYS SER ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 C 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG ARG GLY ASN SEQRES 4 C 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 C 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 C 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 C 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP SEQRES 8 C 130 GLU GLU LEU ASN LYS LEU LEU GLY LYS VAL THR ILE ALA SEQRES 9 C 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU SEQRES 10 C 130 PRO LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 D 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 D 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 D 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 D 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 D 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 D 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 D 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 D 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 D 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 D 126 ALA VAL THR LYS TYR THR SER SER LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG M2L VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA SEQRES 2 G 130 ARG ALA LYS SER ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 G 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG ARG GLY ASN SEQRES 4 G 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 G 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 G 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 G 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP SEQRES 8 G 130 GLU GLU LEU ASN LYS LEU LEU GLY LYS VAL THR ILE ALA SEQRES 9 G 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU SEQRES 10 G 130 PRO LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 H 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 H 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 H 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 H 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 H 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 H 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 H 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 H 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 H 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 H 126 ALA VAL THR LYS TYR THR SER SER LYS SEQRES 1 I 145 DA DT DC DA DG DA DA DT DC DC DC DG DG SEQRES 2 I 145 DT DG DC DC DG DA DG DG DC DC DG DC DT SEQRES 3 I 145 DC DA DA DT DT DG DG DT DC DG DT DA DG SEQRES 4 I 145 DA DC DA DG DC DT DC DT DA DG DC DA DC SEQRES 5 I 145 DC DG DC DT DT DA DA DA DC DG DC DA DC SEQRES 6 I 145 DG DT DA DC DG DC DG DC DT DG DT DC DC SEQRES 7 I 145 DC DC DC DG DC DG DT DT DT DT DA DA DC SEQRES 8 I 145 DC DG DC DC DA DA DG DG DG DG DA DT DT SEQRES 9 I 145 DA DC DT DC DC DC DT DA DG DT DC DT DC SEQRES 10 I 145 DC DA DG DG DC DA DC DG DT DG DT DC DA SEQRES 11 I 145 DG DA DT DA DT DA DT DA DC DA DT DC DG SEQRES 12 I 145 DA DT SEQRES 1 J 145 DA DT DC DG DA DT DG DT DA DT DA DT DA SEQRES 2 J 145 DT DC DT DG DA DC DA DC DG DT DG DC DC SEQRES 3 J 145 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 J 145 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 J 145 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 J 145 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 J 145 DA DC DG DT DG DC DG DT DT DT DA DA DG SEQRES 8 J 145 DC DG DG DT DG DC DT DA DG DA DG DC DT SEQRES 9 J 145 DG DT DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 J 145 DT DG DA DG DC DG DG DC DC DT DC DG DG SEQRES 11 J 145 DC DA DC DC DG DG DG DA DT DT DC DT DG SEQRES 12 J 145 DA DT SEQRES 1 L 21 LEU THR LYS ALA ALA ASP ILE SER LEU ASP ASN LEU VAL SEQRES 2 L 21 GLU GLY LYS ARG LYS ARG ARG SER SEQRES 1 O 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 O 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 O 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 O 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 O 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 O 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 M 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 M 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 M 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 M 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 M 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 M 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 K 21 LEU THR LYS ALA ALA ASP ILE SER LEU ASP ASN LEU VAL SEQRES 2 K 21 GLU GLY LYS ARG LYS ARG ARG SER MODRES 5KGF M2L B 20 LYS MODIFIED RESIDUE MODRES 5KGF M2L F 20 LYS MODIFIED RESIDUE HET M2L B 20 11 HET M2L F 20 11 HETNAM M2L (2R)-2-AMINO-3-(2-DIMETHYLAMINOETHYLSULFANYL)PROPANOIC HETNAM 2 M2L ACID FORMUL 2 M2L 2(C7 H16 N2 O2 S) HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 LYS A 79 1 17 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 GLY A 132 1 13 HELIX 5 AA5 ASP B 24 ILE B 29 5 6 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLY B 94 1 13 HELIX 9 AA9 SER C 16 ALA C 21 1 6 HELIX 10 AB1 PRO C 26 GLY C 37 1 12 HELIX 11 AB2 GLY C 46 ASN C 73 1 28 HELIX 12 AB3 ILE C 79 ASP C 90 1 12 HELIX 13 AB4 ASP C 90 GLY C 98 1 9 HELIX 14 AB5 GLN C 112 LEU C 116 5 5 HELIX 15 AB6 TYR D 34 HIS D 46 1 13 HELIX 16 AB7 SER D 52 LYS D 82 1 31 HELIX 17 AB8 THR D 87 LEU D 99 1 13 HELIX 18 AB9 PRO D 100 SER D 120 1 21 HELIX 19 AC1 GLY E 44 SER E 57 1 14 HELIX 20 AC2 ARG E 63 LYS E 79 1 17 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 GLY E 132 1 13 HELIX 23 AC5 ASP F 24 ILE F 29 5 6 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 GLY F 94 1 13 HELIX 27 AC9 SER G 16 ALA G 21 1 6 HELIX 28 AD1 PRO G 26 GLY G 37 1 12 HELIX 29 AD2 GLY G 46 ASN G 73 1 28 HELIX 30 AD3 ILE G 79 ASP G 90 1 12 HELIX 31 AD4 ASP G 90 GLY G 98 1 9 HELIX 32 AD5 GLN G 112 LEU G 116 5 5 HELIX 33 AD6 TYR H 34 HIS H 46 1 13 HELIX 34 AD7 SER H 52 LYS H 82 1 31 HELIX 35 AD8 THR H 87 LEU H 99 1 13 HELIX 36 AD9 PRO H 100 SER H 120 1 21 HELIX 37 AE1 VAL L 1623 ARG L 1630 1 8 HELIX 38 AE2 THR O 22 GLY O 35 1 14 HELIX 39 AE3 PRO O 37 ASP O 39 5 3 HELIX 40 AE4 THR M 22 GLY M 35 1 14 HELIX 41 AE5 PRO M 37 ASP M 39 5 3 HELIX 42 AE6 VAL K 1623 ARG K 1630 1 8 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 ARG C 42 VAL C 43 0 SHEET 2 AA2 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 42 SHEET 1 AA3 2 ARG C 77 ILE C 78 0 SHEET 2 AA3 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 78 SHEET 1 AA4 2 ARG E 83 PHE E 84 0 SHEET 2 AA4 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA5 2 ARG G 42 VAL G 43 0 SHEET 2 AA5 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 42 SHEET 1 AA6 5 LEU O 15 GLU O 16 0 SHEET 2 AA6 5 GLN O 2 LYS O 6 -1 N ILE O 3 O LEU O 15 SHEET 3 AA6 5 THR O 66 LEU O 71 1 O LEU O 67 N LYS O 6 SHEET 4 AA6 5 GLN O 41 PHE O 45 -1 N ARG O 42 O VAL O 70 SHEET 5 AA6 5 LYS O 48 GLN O 49 -1 O LYS O 48 N PHE O 45 SHEET 1 AA7 5 LEU M 15 GLU M 16 0 SHEET 2 AA7 5 GLN M 2 LYS M 6 -1 N ILE M 3 O LEU M 15 SHEET 3 AA7 5 THR M 66 LEU M 71 1 O LEU M 67 N LYS M 6 SHEET 4 AA7 5 GLN M 41 PHE M 45 -1 N ARG M 42 O VAL M 70 SHEET 5 AA7 5 LYS M 48 GLN M 49 -1 O LYS M 48 N PHE M 45 LINK C ARG B 19 N M2L B 20 1555 1555 1.33 LINK C M2L B 20 N VAL B 21 1555 1555 1.34 LINK C ARG F 19 N M2L F 20 1555 1555 1.33 LINK C M2L F 20 N VAL F 21 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000