PDB Short entry for 5KIY HEADER HYDROLASE/MEMBRANE PROTEIN 17-JUN-16 5KIY TITLE P97 ND1-A232E IN COMPLEX WITH VIMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-460; COMPND 5 SYNONYM: TER ATPASE,15S MG(2+)-ATPASE P97 SUBUNIT,VALOSIN-CONTAINING COMPND 6 PROTEIN,VCP; COMPND 7 EC: 3.6.4.6; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SELENOPROTEIN S; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: RESIDUES 49-122; COMPND 14 SYNONYM: SELS,VCP-INTERACTING MEMBRANE PROTEIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCP; SOURCE 6 EXPRESSION_SYSTEM: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SELENOS, SELS, VIMP, AD-015, SBBI8; SOURCE 13 EXPRESSION_SYSTEM: BACTERIA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 2 KEYWDS P97 ADAPTOR PROTEIN, VCP-INTERACTING MEMBRANE PROTEIN, VIMP, KEYWDS 2 HYDROLASE-MEMBRANE PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.K.TANG,D.XIA REVDAT 3 27-SEP-23 5KIY 1 LINK REVDAT 2 03-JAN-18 5KIY 1 JRNL REVDAT 1 20-DEC-17 5KIY 0 JRNL AUTH W.K.TANG,T.ZHANG,Y.YE,D.XIA JRNL TITL STRUCTURAL BASIS FOR NUCLEOTIDE-MODULATED P97 ASSOCIATION JRNL TITL 2 WITH THE ER MEMBRANE. JRNL REF CELL DISCOV V. 3 17045 2017 JRNL REFN ESSN 2056-5968 JRNL PMID 29238611 JRNL DOI 10.1038/CELLDISC.2017.45 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 125.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 17735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 933 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1069 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.4320 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 124.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.44000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -4.68000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.735 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.343 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.342 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.044 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3921 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3791 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5291 ; 1.928 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8798 ; 1.120 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 7.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;38.924 ;24.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;21.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.111 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4294 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 737 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1946 ; 6.398 ; 9.851 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1945 ; 6.348 ; 9.849 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2429 ; 9.672 ;14.774 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2430 ; 9.677 ;14.779 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 6.521 ;10.462 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1972 ; 6.520 ;10.456 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2861 ;10.323 ;15.439 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15870 ;16.112 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15870 ;16.112 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7313 61.1114 35.4165 REMARK 3 T TENSOR REMARK 3 T11: 0.5378 T22: 0.2661 REMARK 3 T33: 0.5124 T12: -0.0664 REMARK 3 T13: -0.0844 T23: 0.0939 REMARK 3 L TENSOR REMARK 3 L11: 1.8413 L22: 1.6895 REMARK 3 L33: 4.7197 L12: -0.0713 REMARK 3 L13: 2.1813 L23: -0.6900 REMARK 3 S TENSOR REMARK 3 S11: -0.1715 S12: 0.3164 S13: 0.5491 REMARK 3 S21: -0.1093 S22: -0.1595 S23: 0.2256 REMARK 3 S31: -0.3952 S32: -0.0102 S33: 0.3309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4647 54.9811 49.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.3398 T22: 0.0748 REMARK 3 T33: 0.0475 T12: -0.1374 REMARK 3 T13: -0.0330 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.8320 L22: 5.6809 REMARK 3 L33: 5.5666 L12: -0.0713 REMARK 3 L13: 1.4879 L23: 1.5984 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.2074 S13: 0.2377 REMARK 3 S21: 0.4608 S22: -0.2413 S23: 0.0489 REMARK 3 S31: -0.0325 S32: -0.1123 S33: 0.2333 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2259 31.0251 27.0290 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0632 REMARK 3 T33: 0.1054 T12: 0.0268 REMARK 3 T13: -0.0264 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 4.0204 L22: 1.9074 REMARK 3 L33: 2.3876 L12: -0.4164 REMARK 3 L13: -1.1274 L23: -0.4155 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.1313 S13: -0.1733 REMARK 3 S21: 0.1059 S22: -0.1166 S23: 0.3626 REMARK 3 S31: -0.2510 S32: -0.2363 S33: 0.1293 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2244 36.0813 15.1384 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.2080 REMARK 3 T33: 0.2845 T12: -0.1028 REMARK 3 T13: -0.0074 T23: 0.1498 REMARK 3 L TENSOR REMARK 3 L11: 3.9432 L22: 2.0817 REMARK 3 L33: 2.3975 L12: -0.4358 REMARK 3 L13: -0.6761 L23: 0.4844 REMARK 3 S TENSOR REMARK 3 S11: 0.2166 S12: 0.3629 S13: 0.3499 REMARK 3 S21: -0.0176 S22: -0.2310 S23: -0.7259 REMARK 3 S31: -0.2464 S32: 0.4355 S33: 0.0144 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8965 73.8227 38.4265 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.0664 REMARK 3 T33: 0.2302 T12: -0.0706 REMARK 3 T13: -0.1132 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 5.3198 L22: 1.8809 REMARK 3 L33: 10.2539 L12: -0.0196 REMARK 3 L13: -6.3294 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: -0.1634 S13: 0.4278 REMARK 3 S21: 0.1359 S22: 0.1927 S23: 0.0481 REMARK 3 S31: -0.2448 S32: 0.3911 S33: -0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4KO8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8, 6-7 % ETHANOL, 100 REMARK 280 MM NACL, 3.6-4.2 % MPD, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 37980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 130530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 MET B 42 REMARK 465 HIS B 43 REMARK 465 HIS B 44 REMARK 465 HIS B 45 REMARK 465 HIS B 46 REMARK 465 HIS B 47 REMARK 465 HIS B 48 REMARK 465 GLN B 49 REMARK 465 LYS B 50 REMARK 465 LEU B 51 REMARK 465 SER B 52 REMARK 465 ALA B 53 REMARK 465 ARG B 54 REMARK 465 LEU B 55 REMARK 465 ARG B 56 REMARK 465 ALA B 57 REMARK 465 LEU B 58 REMARK 465 ARG B 59 REMARK 465 GLN B 60 REMARK 465 ARG B 61 REMARK 465 GLN B 62 REMARK 465 LEU B 63 REMARK 465 ASP B 64 REMARK 465 ARG B 65 REMARK 465 ALA B 66 REMARK 465 ALA B 67 REMARK 465 ALA B 68 REMARK 465 ALA B 69 REMARK 465 VAL B 70 REMARK 465 GLU B 71 REMARK 465 PRO B 72 REMARK 465 ASP B 73 REMARK 465 VAL B 74 REMARK 465 VAL B 75 REMARK 465 GLU B 109 REMARK 465 GLU B 110 REMARK 465 LYS B 111 REMARK 465 ARG B 112 REMARK 465 ARG B 113 REMARK 465 GLN B 114 REMARK 465 LYS B 115 REMARK 465 ILE B 116 REMARK 465 GLU B 117 REMARK 465 MET B 118 REMARK 465 TRP B 119 REMARK 465 ASP B 120 REMARK 465 SER B 121 REMARK 465 MET B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 368 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 453 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 LEU B 82 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET B 89 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -56.22 -19.13 REMARK 500 ILE A 32 -59.48 -27.68 REMARK 500 GLU A 34 67.52 -102.77 REMARK 500 ASP A 74 117.96 -160.32 REMARK 500 VAL A 220 -63.27 -121.35 REMARK 500 ARG A 313 -1.89 -53.68 REMARK 500 ARG A 362 -120.26 -114.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 124 GLY A 125 -41.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 252 OG1 REMARK 620 2 ANP A 800 O3G 169.5 REMARK 620 3 ANP A 800 O2B 89.5 97.0 REMARK 620 4 HOH A 904 O 90.8 97.6 88.1 REMARK 620 5 HOH A 905 O 84.7 86.1 100.1 170.6 REMARK 620 6 HOH A 914 O 88.6 85.6 174.1 86.3 85.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KIW RELATED DB: PDB DBREF 5KIY A 1 460 UNP P55072 TERA_HUMAN 1 460 DBREF 5KIY B 49 122 UNP Q9BQE4 SELS_HUMAN 49 122 SEQADV 5KIY GLU A 232 UNP P55072 ALA 232 ENGINEERED MUTATION SEQADV 5KIY ARG A 461 UNP P55072 EXPRESSION TAG SEQADV 5KIY SER A 462 UNP P55072 EXPRESSION TAG SEQADV 5KIY HIS A 463 UNP P55072 EXPRESSION TAG SEQADV 5KIY HIS A 464 UNP P55072 EXPRESSION TAG SEQADV 5KIY HIS A 465 UNP P55072 EXPRESSION TAG SEQADV 5KIY HIS A 466 UNP P55072 EXPRESSION TAG SEQADV 5KIY HIS A 467 UNP P55072 EXPRESSION TAG SEQADV 5KIY HIS A 468 UNP P55072 EXPRESSION TAG SEQADV 5KIY MET B 42 UNP Q9BQE4 INITIATING METHIONINE SEQADV 5KIY HIS B 43 UNP Q9BQE4 EXPRESSION TAG SEQADV 5KIY HIS B 44 UNP Q9BQE4 EXPRESSION TAG SEQADV 5KIY HIS B 45 UNP Q9BQE4 EXPRESSION TAG SEQADV 5KIY HIS B 46 UNP Q9BQE4 EXPRESSION TAG SEQADV 5KIY HIS B 47 UNP Q9BQE4 EXPRESSION TAG SEQADV 5KIY HIS B 48 UNP Q9BQE4 EXPRESSION TAG SEQRES 1 A 468 MET ALA SER GLY ALA ASP SER LYS GLY ASP ASP LEU SER SEQRES 2 A 468 THR ALA ILE LEU LYS GLN LYS ASN ARG PRO ASN ARG LEU SEQRES 3 A 468 ILE VAL ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SEQRES 4 A 468 SER LEU SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE SEQRES 5 A 468 ARG GLY ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG SEQRES 6 A 468 GLU ALA VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER SEQRES 7 A 468 ASP GLU LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN SEQRES 8 A 468 LEU ARG VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO SEQRES 9 A 468 CYS PRO ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU SEQRES 10 A 468 PRO ILE ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU SEQRES 11 A 468 PHE GLU VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR SEQRES 12 A 468 ARG PRO ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY SEQRES 13 A 468 GLY MET ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP SEQRES 14 A 468 PRO SER PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE SEQRES 15 A 468 HIS CYS GLU GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU SEQRES 16 A 468 GLU SER LEU ASN GLU VAL GLY TYR ASP ASP ILE GLY GLY SEQRES 17 A 468 CYS ARG LYS GLN LEU ALA GLN ILE LYS GLU MET VAL GLU SEQRES 18 A 468 LEU PRO LEU ARG HIS PRO ALA LEU PHE LYS GLU ILE GLY SEQRES 19 A 468 VAL LYS PRO PRO ARG GLY ILE LEU LEU TYR GLY PRO PRO SEQRES 20 A 468 GLY THR GLY LYS THR LEU ILE ALA ARG ALA VAL ALA ASN SEQRES 21 A 468 GLU THR GLY ALA PHE PHE PHE LEU ILE ASN GLY PRO GLU SEQRES 22 A 468 ILE MET SER LYS LEU ALA GLY GLU SER GLU SER ASN LEU SEQRES 23 A 468 ARG LYS ALA PHE GLU GLU ALA GLU LYS ASN ALA PRO ALA SEQRES 24 A 468 ILE ILE PHE ILE ASP GLU LEU ASP ALA ILE ALA PRO LYS SEQRES 25 A 468 ARG GLU LYS THR HIS GLY GLU VAL GLU ARG ARG ILE VAL SEQRES 26 A 468 SER GLN LEU LEU THR LEU MET ASP GLY LEU LYS GLN ARG SEQRES 27 A 468 ALA HIS VAL ILE VAL MET ALA ALA THR ASN ARG PRO ASN SEQRES 28 A 468 SER ILE ASP PRO ALA LEU ARG ARG PHE GLY ARG PHE ASP SEQRES 29 A 468 ARG GLU VAL ASP ILE GLY ILE PRO ASP ALA THR GLY ARG SEQRES 30 A 468 LEU GLU ILE LEU GLN ILE HIS THR LYS ASN MET LYS LEU SEQRES 31 A 468 ALA ASP ASP VAL ASP LEU GLU GLN VAL ALA ASN GLU THR SEQRES 32 A 468 HIS GLY HIS VAL GLY ALA ASP LEU ALA ALA LEU CYS SER SEQRES 33 A 468 GLU ALA ALA LEU GLN ALA ILE ARG LYS LYS MET ASP LEU SEQRES 34 A 468 ILE ASP LEU GLU ASP GLU THR ILE ASP ALA GLU VAL MET SEQRES 35 A 468 ASN SER LEU ALA VAL THR MET ASP ASP PHE ARG TRP ALA SEQRES 36 A 468 LEU SER GLN SER ASN ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 81 MET HIS HIS HIS HIS HIS HIS GLN LYS LEU SER ALA ARG SEQRES 2 B 81 LEU ARG ALA LEU ARG GLN ARG GLN LEU ASP ARG ALA ALA SEQRES 3 B 81 ALA ALA VAL GLU PRO ASP VAL VAL VAL LYS ARG GLN GLU SEQRES 4 B 81 ALA LEU ALA ALA ALA ARG LEU LYS MET GLN GLU GLU LEU SEQRES 5 B 81 ASN ALA GLN VAL GLU LYS HIS LYS GLU LYS LEU LYS GLN SEQRES 6 B 81 LEU GLU GLU GLU LYS ARG ARG GLN LYS ILE GLU MET TRP SEQRES 7 B 81 ASP SER MET HET ANP A 800 31 HET MG A 801 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *21(H2 O) HELIX 1 AA1 THR A 14 LYS A 18 5 5 HELIX 2 AA2 SER A 42 GLN A 50 1 9 HELIX 3 AA3 ASN A 85 LEU A 92 1 8 HELIX 4 AA4 ASP A 120 VAL A 123 5 4 HELIX 5 AA5 ASN A 129 TYR A 134 1 6 HELIX 6 AA6 TYR A 134 LEU A 140 1 7 HELIX 7 AA7 LYS A 190 ASN A 199 1 10 HELIX 8 AA8 GLY A 202 ILE A 206 5 5 HELIX 9 AA9 CYS A 209 VAL A 220 1 12 HELIX 10 AB1 VAL A 220 HIS A 226 1 7 HELIX 11 AB2 HIS A 226 GLY A 234 1 9 HELIX 12 AB3 GLY A 250 THR A 262 1 13 HELIX 13 AB4 GLY A 271 SER A 276 1 6 HELIX 14 AB5 GLY A 280 ASN A 296 1 17 HELIX 15 AB6 GLU A 305 ILE A 309 5 5 HELIX 16 AB7 GLY A 318 GLY A 334 1 17 HELIX 17 AB8 ARG A 349 ILE A 353 5 5 HELIX 18 AB9 ASP A 354 ARG A 359 5 6 HELIX 19 AC1 ASP A 373 LYS A 386 1 14 HELIX 20 AC2 ASP A 395 GLU A 402 1 8 HELIX 21 AC3 VAL A 407 LYS A 425 1 19 HELIX 22 AC4 ASP A 438 LEU A 445 1 8 HELIX 23 AC5 THR A 448 HIS A 463 1 16 HELIX 24 AC6 LYS B 77 GLU B 108 1 32 SHEET 1 AA1 7 ARG A 25 ASP A 29 0 SHEET 2 AA1 7 LYS A 81 ARG A 83 1 O ILE A 82 N ASP A 29 SHEET 3 AA1 7 VAL A 38 LEU A 41 -1 N SER A 40 O ARG A 83 SHEET 4 AA1 7 GLU A 66 SER A 73 1 O ILE A 70 N VAL A 39 SHEET 5 AA1 7 THR A 56 LYS A 60 -1 N LEU A 59 O ALA A 67 SHEET 6 AA1 7 VAL A 99 PRO A 104 -1 O GLN A 103 N LEU A 58 SHEET 7 AA1 7 ARG A 25 ASP A 29 -1 N LEU A 26 O ILE A 100 SHEET 1 AA2 4 ILE A 151 GLY A 156 0 SHEET 2 AA2 4 ARG A 159 ASP A 169 -1 O PHE A 163 N PHE A 152 SHEET 3 AA2 4 ARG A 113 PRO A 118 -1 N HIS A 115 O GLU A 167 SHEET 4 AA2 4 VAL A 181 HIS A 183 1 O HIS A 183 N ILE A 114 SHEET 1 AA3 2 ARG A 144 ARG A 147 0 SHEET 2 AA3 2 TYR A 173 VAL A 176 -1 O VAL A 176 N ARG A 144 SHEET 1 AA4 5 PHE A 265 ASN A 270 0 SHEET 2 AA4 5 ALA A 299 ASP A 304 1 O ILE A 300 N PHE A 265 SHEET 3 AA4 5 VAL A 341 THR A 347 1 O MET A 344 N ILE A 301 SHEET 4 AA4 5 GLY A 240 TYR A 244 1 N LEU A 243 O ALA A 345 SHEET 5 AA4 5 ARG A 365 ASP A 368 1 O ARG A 365 N LEU A 242 LINK OG1 THR A 252 MG MG A 801 1555 1555 2.01 LINK O3G ANP A 800 MG MG A 801 1555 1555 1.98 LINK O2B ANP A 800 MG MG A 801 1555 1555 1.99 LINK MG MG A 801 O HOH A 904 1555 1555 1.86 LINK MG MG A 801 O HOH A 905 1555 1555 2.00 LINK MG MG A 801 O HOH A 914 1555 1555 2.34 CISPEP 1 ASP A 169 PRO A 170 0 -1.33 CISPEP 2 SER A 171 PRO A 172 0 3.12 CISPEP 3 ALA A 297 PRO A 298 0 -2.48 SITE 1 AC1 20 ASP A 205 GLY A 207 PRO A 247 GLY A 248 SITE 2 AC1 20 THR A 249 GLY A 250 LYS A 251 THR A 252 SITE 3 AC1 20 LEU A 253 ASN A 348 ARG A 359 PHE A 360 SITE 4 AC1 20 ILE A 380 HIS A 384 GLY A 408 ALA A 409 SITE 5 AC1 20 MG A 801 HOH A 904 HOH A 905 HOH A 914 SITE 1 AC2 5 THR A 252 ANP A 800 HOH A 904 HOH A 905 SITE 2 AC2 5 HOH A 914 CRYST1 144.998 144.998 119.817 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006897 0.003982 0.000000 0.00000 SCALE2 0.000000 0.007964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008346 0.00000