PDB Short entry for 5KJX HEADER SIGNALING PROTEIN 20-JUN-16 5KJX TITLE CO-CRYSTAL STRUCTURE OF PKA RI ALPHA CNB-B DOMAIN WITH CAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TISSUE-SPECIFIC EXTINGUISHER 1,TSE1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKAR1A, PKR1, PRKAR1, TSE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TP2000 (DELTA CYA); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQTEV KEYWDS CYCLIC NUCLEOTIDE, CAMP-DEPENDENT PROTEIN KINASE, NUCLEOTIDE KEYWDS 2 SELECTIVITY, CYCLIC NUCLEOTIDE BINDING DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.LORENZ,E.MOON,J.J.KIM,G.Y.HUANG,C.KIM,F.W.HERBERG REVDAT 6 27-SEP-23 5KJX 1 REMARK REVDAT 5 25-DEC-19 5KJX 1 REMARK REVDAT 4 01-NOV-17 5KJX 1 REMARK REVDAT 3 20-SEP-17 5KJX 1 REMARK REVDAT 2 19-JUL-17 5KJX 1 JRNL REVDAT 1 28-JUN-17 5KJX 0 JRNL AUTH R.LORENZ,E.W.MOON,J.J.KIM,S.H.SCHMIDT,B.SANKARAN, JRNL AUTH 2 I.V.PAVLIDIS,C.KIM,F.W.HERBERG JRNL TITL MUTATIONS OF PKA CYCLIC NUCLEOTIDE-BINDING DOMAINS REVEAL JRNL TITL 2 NOVEL ASPECTS OF CYCLIC NUCLEOTIDE SELECTIVITY. JRNL REF BIOCHEM. J. V. 474 2389 2017 JRNL REFN ESSN 1470-8728 JRNL PMID 28583991 JRNL DOI 10.1042/BCJ20160969 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 11873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6485 - 3.0139 1.00 3032 161 0.1738 0.2038 REMARK 3 2 3.0139 - 2.3929 1.00 2878 151 0.1850 0.2550 REMARK 3 3 2.3929 - 2.0906 1.00 2844 150 0.1736 0.2678 REMARK 3 4 2.0906 - 1.8995 0.88 2519 138 0.2009 0.2387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 34.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.80160 REMARK 3 B22 (A**2) : 5.58330 REMARK 3 B33 (A**2) : 3.21840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1119 REMARK 3 ANGLE : 1.123 1519 REMARK 3 CHIRALITY : 0.074 173 REMARK 3 PLANARITY : 0.004 194 REMARK 3 DIHEDRAL : 15.115 415 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 239:250) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5132 -6.4986 -20.4286 REMARK 3 T TENSOR REMARK 3 T11: 0.4801 T22: 0.5404 REMARK 3 T33: 0.2738 T12: -0.0681 REMARK 3 T13: -0.0685 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 1.9355 L22: 8.0549 REMARK 3 L33: 2.9486 L12: 2.4552 REMARK 3 L13: -2.0110 L23: -4.6108 REMARK 3 S TENSOR REMARK 3 S11: -0.6940 S12: 1.8079 S13: 0.3186 REMARK 3 S21: -1.2030 S22: 0.8226 S23: 0.6125 REMARK 3 S31: 0.3947 S32: -0.1071 S33: -0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 251:258) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4482 -0.6435 -13.7935 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.3807 REMARK 3 T33: 0.5712 T12: 0.0051 REMARK 3 T13: 0.0477 T23: 0.2309 REMARK 3 L TENSOR REMARK 3 L11: 4.5437 L22: 6.3228 REMARK 3 L33: 6.5450 L12: -1.0482 REMARK 3 L13: 1.6951 L23: 1.6166 REMARK 3 S TENSOR REMARK 3 S11: 0.2777 S12: -0.0412 S13: 0.1614 REMARK 3 S21: -0.0928 S22: 0.4711 S23: 1.2117 REMARK 3 S31: -0.4927 S32: -1.1286 S33: -0.5512 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 259:274) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1073 0.6136 -18.4006 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.2265 REMARK 3 T33: 0.2692 T12: -0.0475 REMARK 3 T13: -0.0572 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 3.5445 L22: 9.0426 REMARK 3 L33: 9.1524 L12: -5.2057 REMARK 3 L13: 5.0163 L23: -8.3242 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.3694 S13: 0.3009 REMARK 3 S21: -0.4424 S22: -0.2094 S23: 0.0600 REMARK 3 S31: -0.1129 S32: 0.3550 S33: 0.0894 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 275:302) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3278 -9.9479 -1.3416 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.1767 REMARK 3 T33: 0.1344 T12: -0.0452 REMARK 3 T13: -0.0057 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 4.3353 L22: 3.4150 REMARK 3 L33: 3.7839 L12: -0.4515 REMARK 3 L13: 0.1681 L23: -0.2861 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: -0.4207 S13: 0.0742 REMARK 3 S21: 0.0630 S22: -0.1339 S23: -0.1929 REMARK 3 S31: -0.1932 S32: 0.3525 S33: 0.0168 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 303:310) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4174 -7.4577 15.9151 REMARK 3 T TENSOR REMARK 3 T11: 0.5275 T22: 1.0135 REMARK 3 T33: 0.2756 T12: -0.0882 REMARK 3 T13: 0.0204 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.1124 L22: 2.0004 REMARK 3 L33: 4.5543 L12: -1.0615 REMARK 3 L13: 0.5953 L23: -3.8113 REMARK 3 S TENSOR REMARK 3 S11: -0.1575 S12: -1.8752 S13: 0.0337 REMARK 3 S21: 2.1979 S22: -0.1055 S23: -0.7398 REMARK 3 S31: -0.5386 S32: 1.2757 S33: -0.0049 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 311:342) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8909 -5.7801 2.1551 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.2131 REMARK 3 T33: 0.1436 T12: 0.0023 REMARK 3 T13: 0.0253 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 4.0256 L22: 3.7987 REMARK 3 L33: 3.7377 L12: 0.8919 REMARK 3 L13: -0.3544 L23: -0.9079 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: -0.5995 S13: 0.2559 REMARK 3 S21: 0.3566 S22: -0.0615 S23: 0.0561 REMARK 3 S31: -0.3392 S32: 0.0390 S33: -0.0764 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 343:356) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3537 -3.5132 -8.1800 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.2091 REMARK 3 T33: 0.1767 T12: -0.0055 REMARK 3 T13: -0.0274 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 7.1312 L22: 6.4694 REMARK 3 L33: 4.7848 L12: 3.5541 REMARK 3 L13: 0.0176 L23: -1.5908 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: 0.1171 S13: 0.3650 REMARK 3 S21: 0.1464 S22: -0.1265 S23: -0.3876 REMARK 3 S31: -0.3510 S32: 0.3818 S33: 0.1369 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 357:379) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7561 4.2044 -0.8534 REMARK 3 T TENSOR REMARK 3 T11: 0.3554 T22: 0.2047 REMARK 3 T33: 0.5158 T12: 0.0495 REMARK 3 T13: -0.0268 T23: -0.0903 REMARK 3 L TENSOR REMARK 3 L11: 5.7467 L22: 3.2611 REMARK 3 L33: 8.3949 L12: 0.9150 REMARK 3 L13: -3.6756 L23: -1.4723 REMARK 3 S TENSOR REMARK 3 S11: 0.2260 S12: -0.2394 S13: 1.0268 REMARK 3 S21: 0.3883 S22: -0.0551 S23: 0.8897 REMARK 3 S31: -1.2646 S32: -0.5921 S33: -0.2476 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KJX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 80.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11873 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 50.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 8000, 100MM REMARK 280 IMIDAZOLE/HYDROCHLORIC ACID PH 6.5, 3% V/V MPD, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.94850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.40850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.10350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.40850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.94850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.10350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 232 REMARK 465 SER A 233 REMARK 465 ILE A 234 REMARK 465 LEU A 235 REMARK 465 MET A 236 REMARK 465 GLY A 237 REMARK 465 SER A 238 REMARK 465 THR A 239 REMARK 465 LEU A 240 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 243 CZ NH1 NH2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 LYS A 252 CE NZ REMARK 470 GLU A 257 CD OE1 OE2 REMARK 470 LYS A 261 CE NZ REMARK 470 ARG A 306 CD NE CZ NH1 NH2 REMARK 470 SER A 307 OG REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 ASN A 309 CG OD1 ND2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 ASN A 332 CG OD1 ND2 REMARK 470 ARG A 333 NE CZ NH1 NH2 REMARK 470 LYS A 367 CE NZ REMARK 470 SER A 378 OG REMARK 470 VAL A 381 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 287 O HOH A 501 2.11 REMARK 500 OE2 GLU A 356 O HOH A 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 321 -5.72 77.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KJZ RELATED DB: PDB REMARK 900 RELATED ID: 5KJY RELATED DB: PDB DBREF 5KJX A 234 381 UNP P10644 KAP0_HUMAN 234 381 SEQADV 5KJX GLY A 232 UNP P10644 EXPRESSION TAG SEQADV 5KJX SER A 233 UNP P10644 EXPRESSION TAG SEQRES 1 A 150 GLY SER ILE LEU MET GLY SER THR LEU ARG LYS ARG LYS SEQRES 2 A 150 MET TYR GLU GLU PHE LEU SER LYS VAL SER ILE LEU GLU SEQRES 3 A 150 SER LEU ASP LYS TRP GLU ARG LEU THR VAL ALA ASP ALA SEQRES 4 A 150 LEU GLU PRO VAL GLN PHE GLU ASP GLY GLN LYS ILE VAL SEQRES 5 A 150 VAL GLN GLY GLU PRO GLY ASP GLU PHE PHE ILE ILE LEU SEQRES 6 A 150 GLU GLY SER ALA ALA VAL LEU GLN ARG ARG SER GLU ASN SEQRES 7 A 150 GLU GLU PHE VAL GLU VAL GLY ARG LEU GLY PRO SER ASP SEQRES 8 A 150 TYR PHE GLY GLU ILE ALA LEU LEU MET ASN ARG PRO ARG SEQRES 9 A 150 ALA ALA THR VAL VAL ALA ARG GLY PRO LEU LYS CYS VAL SEQRES 10 A 150 LYS LEU ASP ARG PRO ARG PHE GLU ARG VAL LEU GLY PRO SEQRES 11 A 150 CYS SER ASP ILE LEU LYS ARG ASN ILE GLN GLN TYR ASN SEQRES 12 A 150 SER PHE VAL SER LEU SER VAL HET CMP A 401 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 2 CMP C10 H12 N5 O6 P FORMUL 3 HOH *115(H2 O) HELIX 1 AA1 ARG A 241 LYS A 252 1 12 HELIX 2 AA2 VAL A 253 GLU A 257 5 5 HELIX 3 AA3 ASP A 260 LEU A 271 1 12 HELIX 4 AA4 GLY A 325 ASN A 332 1 8 HELIX 5 AA5 ARG A 352 LEU A 359 1 8 HELIX 6 AA6 CYS A 362 GLN A 371 1 10 SHEET 1 AA1 4 GLU A 272 PHE A 276 0 SHEET 2 AA1 4 THR A 338 ASP A 351 -1 O CYS A 347 N VAL A 274 SHEET 3 AA1 4 GLU A 291 GLN A 304 -1 N LEU A 303 O THR A 338 SHEET 4 AA1 4 VAL A 313 LEU A 318 -1 O VAL A 313 N GLN A 304 SHEET 1 AA2 4 LYS A 281 VAL A 283 0 SHEET 2 AA2 4 THR A 338 ASP A 351 -1 O VAL A 339 N ILE A 282 SHEET 3 AA2 4 GLU A 291 GLN A 304 -1 N LEU A 303 O THR A 338 SHEET 4 AA2 4 TYR A 323 PHE A 324 -1 O PHE A 324 N PHE A 293 SITE 1 AC1 15 GLU A 277 GLN A 304 PHE A 324 GLY A 325 SITE 2 AC1 15 GLU A 326 ILE A 327 ALA A 328 ARG A 335 SITE 3 AC1 15 ALA A 336 ALA A 337 VAL A 339 TYR A 373 SITE 4 AC1 15 ASN A 374 SER A 375 HOH A 544 CRYST1 37.897 52.207 74.817 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013366 0.00000