PDB Short entry for 5KL6 HEADER TRANSCRIPTION/DNA 23-JUN-16 5KL6 TITLE WILMS TUMOR PROTEIN (WT1) Q369R ZNF2-4 IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: WILMS TUMOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: WT33; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*GP*GP*T)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*AP*CP*CP*CP*CP*CP*AP*CP*GP*C)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: -KTS; SOURCE 6 GENE: WT1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL-CODON PLUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PXC1302; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS ZINC FINGER, WILMS TUMOR, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 6 27-SEP-23 5KL6 1 REMARK REVDAT 5 25-DEC-19 5KL6 1 REMARK REVDAT 4 27-SEP-17 5KL6 1 REMARK REVDAT 3 14-DEC-16 5KL6 1 JRNL REVDAT 2 21-SEP-16 5KL6 1 JRNL REVDAT 1 14-SEP-16 5KL6 0 JRNL AUTH H.HASHIMOTO,X.ZHANG,Y.ZHENG,G.G.WILSON,X.CHENG JRNL TITL DENYS-DRASH SYNDROME ASSOCIATED WT1 GLUTAMINE 369 MUTANTS JRNL TITL 2 HAVE ALTERED SEQUENCE-PREFERENCES AND ALTERED RESPONSES TO JRNL TITL 3 EPIGENETIC MODIFICATIONS. JRNL REF NUCLEIC ACIDS RES. V. 44 10165 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27596598 JRNL DOI 10.1093/NAR/GKW766 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2257: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 19660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0351 - 3.1384 0.99 2933 154 0.1399 0.1681 REMARK 3 2 3.1384 - 2.4915 1.00 2917 151 0.1881 0.2267 REMARK 3 3 2.4915 - 2.1767 0.99 2898 154 0.1920 0.2004 REMARK 3 4 2.1767 - 1.9777 0.99 2884 154 0.2071 0.2530 REMARK 3 5 1.9777 - 1.8360 0.98 2858 153 0.2145 0.2606 REMARK 3 6 1.8360 - 1.7278 0.89 2587 129 0.2341 0.2831 REMARK 3 7 1.7278 - 1.6412 0.55 1610 78 0.2755 0.3434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1386 REMARK 3 ANGLE : 1.306 1978 REMARK 3 CHIRALITY : 0.061 214 REMARK 3 PLANARITY : 0.008 165 REMARK 3 DIHEDRAL : 22.746 612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8146-260.9393 -27.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.2489 REMARK 3 T33: 0.2509 T12: -0.0006 REMARK 3 T13: 0.0520 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 3.5929 L22: 5.3080 REMARK 3 L33: 5.3098 L12: 1.6490 REMARK 3 L13: -0.4964 L23: -0.2273 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: 0.2912 S13: -0.2463 REMARK 3 S21: -0.6073 S22: 0.3791 S23: -0.8592 REMARK 3 S31: 0.3529 S32: 0.5045 S33: -0.1340 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 384 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8415-257.2223 -18.8395 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.2208 REMARK 3 T33: 0.4017 T12: 0.0021 REMARK 3 T13: -0.0013 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 3.5246 L22: 5.1253 REMARK 3 L33: 3.3489 L12: -3.1688 REMARK 3 L13: -1.8915 L23: 0.6565 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.4210 S13: 0.7552 REMARK 3 S21: 0.0251 S22: 0.2516 S23: 0.4004 REMARK 3 S31: -0.2376 S32: -0.2073 S33: -0.1318 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3913-276.1955 -8.9402 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1734 REMARK 3 T33: 0.1903 T12: 0.0017 REMARK 3 T13: 0.0372 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 6.3009 L22: 3.8970 REMARK 3 L33: 7.4362 L12: 2.3538 REMARK 3 L13: -1.5593 L23: 0.0759 REMARK 3 S TENSOR REMARK 3 S11: -0.1070 S12: -0.1038 S13: 0.0699 REMARK 3 S21: 0.2227 S22: 0.1940 S23: 0.5202 REMARK 3 S31: 0.1948 S32: -0.1728 S33: -0.0997 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6746-267.0042 -18.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.1287 REMARK 3 T33: 0.1322 T12: -0.0656 REMARK 3 T13: 0.0042 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.7511 L22: 2.5535 REMARK 3 L33: 1.5214 L12: 0.4609 REMARK 3 L13: 2.0978 L23: -0.6748 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: 0.2681 S13: -0.0476 REMARK 3 S21: 0.1334 S22: 0.1634 S23: 0.0473 REMARK 3 S31: 0.4852 S32: -0.1026 S33: -0.0141 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3795-268.0570 -20.8876 REMARK 3 T TENSOR REMARK 3 T11: 0.2480 T22: 0.2503 REMARK 3 T33: 0.1541 T12: -0.0140 REMARK 3 T13: 0.0268 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.4610 L22: 2.4451 REMARK 3 L33: 5.2370 L12: 0.5905 REMARK 3 L13: -0.7303 L23: -1.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.0552 S13: -0.1569 REMARK 3 S21: -0.2265 S22: 0.3724 S23: -0.1240 REMARK 3 S31: 0.1350 S32: -0.3609 S33: -0.2810 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2 M NA-MALONATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.99100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.00400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.99100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.00400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 345 REMARK 465 PRO A 346 REMARK 465 LEU A 347 REMARK 465 GLY A 348 REMARK 465 SER A 349 REMARK 465 GLU A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 369 O HOH A 602 1.59 REMARK 500 O HOH A 601 O HOH A 638 2.07 REMARK 500 O CYS A 355 O HOH A 601 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 2 O3' DC B 3 P -0.170 REMARK 500 DC C 5 O3' DC C 5 C3' -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 2 C3' - O3' - P ANGL. DEV. = 16.6 DEGREES REMARK 500 DC B 3 O3' - P - O5' ANGL. DEV. = 11.5 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 6 O5' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DG B 6 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 7 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 CYS A 360 SG 114.5 REMARK 620 3 HIS A 373 NE2 111.4 107.7 REMARK 620 4 HIS A 377 NE2 111.3 109.8 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 385 SG REMARK 620 2 CYS A 388 SG 110.7 REMARK 620 3 HIS A 401 NE2 110.3 110.3 REMARK 620 4 HIS A 405 NE2 111.9 111.3 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 413 SG REMARK 620 2 CYS A 418 SG 114.2 REMARK 620 3 HIS A 431 NE2 107.8 113.1 REMARK 620 4 HIS A 435 NE2 105.9 116.5 97.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KL2 RELATED DB: PDB REMARK 900 RELATED ID: 5KL3 RELATED DB: PDB REMARK 900 RELATED ID: 5KL4 RELATED DB: PDB REMARK 900 RELATED ID: 5KL5 RELATED DB: PDB REMARK 900 RELATED ID: 5KL7 RELATED DB: PDB DBREF 5KL6 A 350 437 UNP P19544 WT1_HUMAN 333 420 DBREF 5KL6 B 1 11 PDB 5KL6 5KL6 1 11 DBREF 5KL6 C 1 11 PDB 5KL6 5KL6 1 11 SEQADV 5KL6 GLY A 345 UNP P19544 EXPRESSION TAG SEQADV 5KL6 PRO A 346 UNP P19544 EXPRESSION TAG SEQADV 5KL6 LEU A 347 UNP P19544 EXPRESSION TAG SEQADV 5KL6 GLY A 348 UNP P19544 EXPRESSION TAG SEQADV 5KL6 SER A 349 UNP P19544 EXPRESSION TAG SEQADV 5KL6 ARG A 369 UNP P19544 GLN 352 ENGINEERED MUTATION SEQRES 1 A 93 GLY PRO LEU GLY SER GLU LYS PRO TYR GLN CYS ASP PHE SEQRES 2 A 93 LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP ARG LEU SEQRES 3 A 93 LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS PRO PHE SEQRES 4 A 93 GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SER ASP SEQRES 5 A 93 HIS LEU LYS THR HIS THR ARG THR HIS THR GLY GLU LYS SEQRES 6 A 93 PRO PHE SER CYS ARG TRP PRO SER CYS GLN LYS LYS PHE SEQRES 7 A 93 ALA ARG SER ASP GLU LEU VAL ARG HIS HIS ASN MET HIS SEQRES 8 A 93 GLN ARG SEQRES 1 B 11 DA DG DC DG DT DG DG DG DG DG DT SEQRES 1 C 11 DT DA DC DC DC DC DC DA DC DG DC HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *121(H2 O) HELIX 1 AA1 ARG A 366 GLY A 379 1 14 HELIX 2 AA2 ARG A 394 GLY A 407 1 14 HELIX 3 AA3 ARG A 424 ARG A 437 1 14 SHEET 1 AA1 2 TYR A 353 GLN A 354 0 SHEET 2 AA1 2 ARG A 363 PHE A 364 -1 O PHE A 364 N TYR A 353 SHEET 1 AA2 2 PHE A 383 GLN A 384 0 SHEET 2 AA2 2 LYS A 391 PHE A 392 -1 O PHE A 392 N PHE A 383 SHEET 1 AA3 2 PHE A 411 SER A 412 0 SHEET 2 AA3 2 LYS A 421 PHE A 422 -1 O PHE A 422 N PHE A 411 LINK SG CYS A 355 ZN ZN A 501 1555 1555 2.28 LINK SG CYS A 360 ZN ZN A 501 1555 1555 2.27 LINK NE2 HIS A 373 ZN ZN A 501 1555 1555 2.01 LINK NE2 HIS A 377 ZN ZN A 501 1555 1555 2.06 LINK SG CYS A 385 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 388 ZN ZN A 502 1555 1555 2.26 LINK NE2 HIS A 401 ZN ZN A 502 1555 1555 2.02 LINK NE2 HIS A 405 ZN ZN A 502 1555 1555 2.03 LINK SG CYS A 413 ZN ZN A 503 1555 1555 2.26 LINK SG CYS A 418 ZN ZN A 503 1555 1555 2.30 LINK NE2 HIS A 431 ZN ZN A 503 1555 1555 2.00 LINK NE2 HIS A 435 ZN ZN A 503 1555 1555 1.95 SITE 1 AC1 4 CYS A 355 CYS A 360 HIS A 373 HIS A 377 SITE 1 AC2 4 CYS A 385 CYS A 388 HIS A 401 HIS A 405 SITE 1 AC3 4 CYS A 413 CYS A 418 HIS A 431 HIS A 435 CRYST1 75.982 66.008 35.567 90.00 90.52 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013161 0.000000 0.000120 0.00000 SCALE2 0.000000 0.015150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028117 0.00000