PDB Short entry for 5KLU HEADER ELECTRON TRANSPORT 25-JUN-16 5KLU TITLE CRYSTAL STRUCTURE OF A DOMAIN-SWAPPED DIMER OF YEAST ISO-1-CYTOCHROME TITLE 2 C WITH OMEGA-UNDECYLENYL-BETA-D-MALTOPYRANOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CYC1, YJR048W, J1653; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ELECTRON TRANSPORT APOPTOSIS LIPID BINDING, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.E.BOWLER,F.G.WHITBY REVDAT 4 10-MAR-21 5KLU 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 27-NOV-19 5KLU 1 REMARK REVDAT 2 20-SEP-17 5KLU 1 REMARK REVDAT 1 22-MAR-17 5KLU 0 JRNL AUTH L.J.MCCLELLAND,H.B.STEELE,F.G.WHITBY,T.C.MOU,D.HOLLEY, JRNL AUTH 2 J.B.ROSS,S.R.SPRANG,B.E.BOWLER JRNL TITL CYTOCHROME C CAN FORM A WELL-DEFINED BINDING POCKET FOR JRNL TITL 2 HYDROCARBONS. JRNL REF J. AM. CHEM. SOC. V. 138 16770 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27990813 JRNL DOI 10.1021/JACS.6B10745 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 32368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0889 - 6.0332 1.00 1034 143 0.2112 0.2550 REMARK 3 2 6.0332 - 4.7920 1.00 1041 143 0.2008 0.2465 REMARK 3 3 4.7920 - 4.1872 1.00 1035 142 0.1705 0.2658 REMARK 3 4 4.1872 - 3.8048 1.00 1038 143 0.1976 0.2756 REMARK 3 5 3.8048 - 3.5323 1.00 1045 145 0.2020 0.2635 REMARK 3 6 3.5323 - 3.3242 1.00 1036 143 0.1926 0.2681 REMARK 3 7 3.3242 - 3.1578 1.00 1025 142 0.2039 0.2114 REMARK 3 8 3.1578 - 3.0204 0.99 1028 149 0.2101 0.2948 REMARK 3 9 3.0204 - 2.9042 1.00 1010 143 0.2193 0.2761 REMARK 3 10 2.9042 - 2.8040 1.00 1059 149 0.2044 0.2296 REMARK 3 11 2.8040 - 2.7164 1.00 1044 135 0.1911 0.2598 REMARK 3 12 2.7164 - 2.6387 1.00 1018 141 0.1882 0.2220 REMARK 3 13 2.6387 - 2.5693 0.99 1026 143 0.1802 0.2182 REMARK 3 14 2.5693 - 2.5066 0.99 1046 141 0.1781 0.2251 REMARK 3 15 2.5066 - 2.4496 1.00 1037 145 0.1791 0.2122 REMARK 3 16 2.4496 - 2.3975 1.00 1013 138 0.1956 0.2133 REMARK 3 17 2.3975 - 2.3496 1.00 1037 141 0.2088 0.2632 REMARK 3 18 2.3496 - 2.3052 0.99 1041 149 0.2098 0.3053 REMARK 3 19 2.3052 - 2.2641 1.00 1016 140 0.2271 0.2472 REMARK 3 20 2.2641 - 2.2257 1.00 1044 142 0.2075 0.2382 REMARK 3 21 2.2257 - 2.1898 1.00 1039 140 0.2304 0.2717 REMARK 3 22 2.1898 - 2.1561 0.99 1016 143 0.2215 0.2742 REMARK 3 23 2.1561 - 2.1244 1.00 1060 147 0.2072 0.3030 REMARK 3 24 2.1244 - 2.0945 1.00 1011 132 0.2189 0.2819 REMARK 3 25 2.0945 - 2.0662 1.00 1052 142 0.2489 0.2205 REMARK 3 26 2.0662 - 2.0394 0.99 1022 146 0.2391 0.3263 REMARK 3 27 2.0394 - 2.0139 1.00 1040 138 0.2496 0.2935 REMARK 3 28 2.0139 - 1.9896 0.51 539 71 0.3102 0.3138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1885 REMARK 3 ANGLE : 0.957 2551 REMARK 3 CHIRALITY : 0.053 254 REMARK 3 PLANARITY : 0.006 306 REMARK 3 DIHEDRAL : 18.133 1078 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -11.0870 4.3674 -18.2492 REMARK 3 T TENSOR REMARK 3 T11: 0.5230 T22: 0.4236 REMARK 3 T33: 0.3976 T12: 0.0188 REMARK 3 T13: -0.1008 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 2.2731 L22: 2.8025 REMARK 3 L33: 2.3656 L12: -0.2984 REMARK 3 L13: 0.1137 L23: 0.6568 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.6272 S13: 0.1675 REMARK 3 S21: -0.8275 S22: -0.0222 S23: 0.4874 REMARK 3 S31: -0.5312 S32: -0.3209 S33: -0.2588 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17478 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 22.70 REMARK 200 R MERGE (I) : 0.25900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : 1.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVIOR: 90% AMMONIUM SULFATE, 0.1 M REMARK 280 TRIS, PH 7.5 PROTEIN: 8 MG/ML IN 75% AMMONIUM SULFATE DETERGENT: REMARK 280 12 MM W-UNDECYLENYL-B-D-MALTOPYRANOSIDE IN DEIONIZED WATER MIXED REMARK 280 2:2:1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.24450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.71900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.24450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.71900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 322 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -2 REMARK 465 LYS A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 84 NH2 ARG B 13 2.13 REMARK 500 OD1 ASN B 52 ND2 ASN B 56 2.18 REMARK 500 NZ LYS B 99 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -144.32 -130.89 REMARK 500 ASN A 70 74.54 -170.62 REMARK 500 ALA B -1 -151.59 45.72 REMARK 500 VAL B 20 -42.61 -135.09 REMARK 500 LYS B 27 -155.34 -126.72 REMARK 500 ASN B 56 81.46 -155.60 REMARK 500 ASN B 62 -63.22 -104.55 REMARK 500 PHE B 82 41.99 -108.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 86.7 REMARK 620 3 HEC A 201 NB 92.9 91.6 REMARK 620 4 HEC A 201 NC 91.8 178.4 87.9 REMARK 620 5 HEC A 201 ND 84.7 88.6 177.5 91.9 REMARK 620 6 HOH A 317 O 176.8 92.5 90.2 89.1 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 91.8 REMARK 620 3 HEC B 201 NB 87.0 91.0 REMARK 620 4 HEC B 201 NC 85.7 177.5 88.7 REMARK 620 5 HEC B 201 ND 90.2 88.9 177.1 91.2 REMARK 620 6 HOH B 306 O 171.3 87.7 101.8 94.8 81.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6UZ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6UZ B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 14 DBREF 5KLU A -2 103 UNP P00044 CYC1_YEAST 4 109 DBREF 5KLU B -3 103 UNP P00044 CYC1_YEAST 4 109 SEQADV 5KLU ALA A 72 UNP P00044 LYS 78 ENGINEERED MUTATION SEQADV 5KLU SER A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 5KLU ALA B 72 UNP P00044 LYS 78 ENGINEERED MUTATION SEQADV 5KLU SER B 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 106 PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR LEU PHE SEQRES 2 A 106 LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU LYS GLY SEQRES 3 A 106 GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY ILE PHE SEQRES 4 A 106 GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER TYR THR SEQRES 5 A 106 ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP GLU ASN SEQRES 6 A 106 ASN MET SER GLU TYR LEU THR ASN PRO ALA LYS TYR ILE SEQRES 7 A 106 PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS LYS GLU SEQRES 8 A 106 LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS LYS ALA SEQRES 9 A 106 SER GLU SEQRES 1 B 106 PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR LEU PHE SEQRES 2 B 106 LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU LYS GLY SEQRES 3 B 106 GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY ILE PHE SEQRES 4 B 106 GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER TYR THR SEQRES 5 B 106 ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP GLU ASN SEQRES 6 B 106 ASN MET SER GLU TYR LEU THR ASN PRO ALA LYS TYR ILE SEQRES 7 B 106 PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS LYS GLU SEQRES 8 B 106 LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS LYS ALA SEQRES 9 B 106 SER GLU HET HEC A 201 43 HET 6UZ A 202 34 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET HEC B 201 43 HET 6UZ B 202 34 HET SO4 B 203 5 HETNAM HEC HEME C HETNAM 6UZ OMEGA-UNDECYLENYL-BETA-D-MALTOPYRANOSIDE HETNAM SO4 SULFATE ION HETSYN 6UZ (2~{R},3~{S},4~{S},5~{R},6~{R})-2-(HYDROXYMETHYL)-6- HETSYN 2 6UZ [(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(HYDROXYMETHYL)-4, HETSYN 3 6UZ 5-BIS(OXIDANYL )-6-UNDEC-10-ENOXY-OXAN-3-YL]OXY-OXANE- HETSYN 4 6UZ 3,4,5-TRIOL FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 6UZ 2(C23 H42 O11) FORMUL 5 SO4 4(O4 S 2-) FORMUL 11 HOH *37(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 ASP A 50 LYS A 55 1 6 HELIX 3 AA3 ASP A 60 THR A 69 1 10 HELIX 4 AA4 ASN A 70 ILE A 75 5 6 HELIX 5 AA5 GLY A 77 PHE A 82 1 6 HELIX 6 AA6 LYS A 87 GLU A 103 1 17 HELIX 7 AA7 ALA B 3 CYS B 14 1 12 HELIX 8 AA8 ASN B 62 LEU B 68 1 7 HELIX 9 AA9 ASN B 70 ILE B 75 5 6 HELIX 10 AB1 LYS B 79 GLY B 83 5 5 HELIX 11 AB2 LYS B 87 SER B 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.81 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.98 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.81 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.84 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.04 LINK FE HEC A 201 O HOH A 317 1555 1555 1.98 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 2.04 LINK FE HEC B 201 O HOH B 306 1555 1555 2.06 SITE 1 AC1 23 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 23 VAL A 28 ILE A 35 SER A 40 GLY A 41 SITE 3 AC1 23 TYR A 46 TYR A 48 THR A 49 TRP A 59 SITE 4 AC1 23 TYR A 67 6UZ A 202 HOH A 305 HOH A 306 SITE 5 AC1 23 HOH A 309 HOH A 310 HOH A 312 HOH A 317 SITE 6 AC1 23 PHE B 82 GLY B 83 LEU B 94 SITE 1 AC2 10 GLY A 1 LYS A 55 ASN A 62 ASN A 63 SITE 2 AC2 10 GLU A 66 HEC A 201 HOH A 303 ASN B 92 SITE 3 AC2 10 ILE B 95 THR B 96 SITE 1 AC3 5 SER A 2 ALA A 3 LYS A 4 SER A 47 SITE 2 AC3 5 HOH A 327 SITE 1 AC4 5 LYS A 4 ALA A 43 GLU A 44 GLY A 45 SITE 2 AC4 5 HOH A 313 SITE 1 AC5 6 PRO A 76 GLY A 77 THR A 78 LYS A 79 SITE 2 AC5 6 MET A 80 LYS A 86 SITE 1 AC6 5 LYS B 55 TRP B 59 GLU B 66 TYR B 74 SITE 2 AC6 5 HEC B 201 SITE 1 AC7 4 LYS B 86 LYS B 87 GLU B 88 HOH B 303 SITE 1 AC8 22 ALA A 81 PHE A 82 GLY A 83 LEU A 85 SITE 2 AC8 22 ARG B 13 CYS B 14 LEU B 15 GLN B 16 SITE 3 AC8 22 HIS B 18 LYS B 27 VAL B 28 GLY B 29 SITE 4 AC8 22 PRO B 30 ILE B 35 SER B 40 GLY B 41 SITE 5 AC8 22 TYR B 48 THR B 49 TRP B 59 TYR B 67 SITE 6 AC8 22 6UZ B 202 HOH B 306 SITE 1 AC9 22 ALA A 81 PHE A 82 GLY A 83 LEU A 85 SITE 2 AC9 22 PHE B 10 ARG B 13 LEU B 15 GLN B 16 SITE 3 AC9 22 CYS B 17 HIS B 18 VAL B 28 GLY B 29 SITE 4 AC9 22 PRO B 30 ILE B 35 SER B 40 GLY B 41 SITE 5 AC9 22 TYR B 48 THR B 49 TRP B 59 TYR B 67 SITE 6 AC9 22 6UZ B 202 HOH B 306 CRYST1 54.489 61.438 74.165 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013483 0.00000