PDB Short entry for 5KTQ HEADER TRANSFERASE 22-SEP-98 5KTQ TITLE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DNA POLYMERASE I); COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 STRAIN: X7029; SOURCE 5 GENE: TAQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PWB254 KEYWDS LARGE FRAGEMENT OF TAQ DNA POLYMERASE I, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,Y.KONG,S.KOROLEV,G.WAKSMAN REVDAT 4 06-MAR-24 5KTQ 1 REMARK REVDAT 3 24-FEB-09 5KTQ 1 VERSN REVDAT 2 22-DEC-99 5KTQ 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 30-SEP-98 5KTQ 0 JRNL AUTH Y.LI,Y.KONG,S.KOROLEV,G.WAKSMAN JRNL TITL CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF THERMUS JRNL TITL 2 AQUATICUS DNA POLYMERASE I COMPLEXED WITH JRNL TITL 3 DEOXYRIBONUCLEOSIDE TRIPHOSPHATES. JRNL REF PROTEIN SCI. V. 7 1116 1998 JRNL REFN ISSN 0961-8368 JRNL PMID 9605316 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 19303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 957 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 761 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.450 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.040 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.650 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.540 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : DCTP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : DCTP.TOPH REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KTQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 9.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 504 REMARK 465 LYS A 505 REMARK 465 THR A 506 REMARK 465 GLU A 507 REMARK 465 LYS A 508 REMARK 465 THR A 509 REMARK 465 GLY A 510 REMARK 465 LYS A 511 REMARK 465 ARG A 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 290 OG REMARK 470 SER A 513 OG REMARK 470 THR A 514 OG1 CG2 REMARK 470 SER A 515 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 333 NE2 HIS A 333 CD2 -0.066 REMARK 500 HIS A 443 NE2 HIS A 443 CD2 -0.068 REMARK 500 HIS A 480 NE2 HIS A 480 CD2 -0.072 REMARK 500 HIS A 526 NE2 HIS A 526 CD2 -0.067 REMARK 500 HIS A 554 NE2 HIS A 554 CD2 -0.072 REMARK 500 HIS A 561 NE2 HIS A 561 CD2 -0.066 REMARK 500 HIS A 621 NE2 HIS A 621 CD2 -0.074 REMARK 500 HIS A 639 NE2 HIS A 639 CD2 -0.074 REMARK 500 HIS A 784 NE2 HIS A 784 CD2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 299 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 299 CE2 - CD2 - CG ANGL. DEV. = -6.6 DEGREES REMARK 500 TRP A 318 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A 318 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 328 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 359 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 362 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 392 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TRP A 398 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 398 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 417 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 417 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP A 428 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 457 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 487 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 487 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU A 494 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU A 519 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 523 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 536 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 SER A 543 CA - CB - OG ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 593 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TRP A 604 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 604 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 617 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TRP A 645 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 645 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR A 671 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 TRP A 706 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP A 706 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 716 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TRP A 827 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP A 827 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 291 -125.76 -60.52 REMARK 500 ALA A 293 -131.18 61.64 REMARK 500 PHE A 309 130.30 -170.62 REMARK 500 ALA A 326 89.31 -163.64 REMARK 500 GLU A 363 40.41 -83.50 REMARK 500 PRO A 373 -7.43 -58.76 REMARK 500 ASP A 381 110.16 -164.06 REMARK 500 PRO A 382 -18.05 -47.93 REMARK 500 GLU A 400 35.16 -94.44 REMARK 500 GLU A 423 84.73 -152.32 REMARK 500 LEU A 477 40.91 -76.50 REMARK 500 ALA A 478 -15.13 -152.87 REMARK 500 ASP A 496 -72.46 -94.11 REMARK 500 PRO A 501 173.04 -54.00 REMARK 500 ALA A 502 -3.72 64.78 REMARK 500 THR A 514 -85.79 -122.58 REMARK 500 LEU A 519 -67.00 -19.00 REMARK 500 LEU A 522 47.63 -94.90 REMARK 500 ARG A 523 36.13 -85.63 REMARK 500 GLU A 524 -107.39 -85.18 REMARK 500 VAL A 529 22.23 -77.38 REMARK 500 THR A 544 -64.16 -101.69 REMARK 500 SER A 577 -56.77 -122.58 REMARK 500 ALA A 597 4.76 -69.64 REMARK 500 PRO A 650 89.43 -43.09 REMARK 500 ARG A 651 -154.60 47.40 REMARK 500 VAL A 654 46.48 29.16 REMARK 500 PRO A 656 -24.47 -26.94 REMARK 500 LEU A 670 -73.11 -29.15 REMARK 500 ALA A 683 99.51 -48.12 REMARK 500 LEU A 733 30.30 -55.96 REMARK 500 GLU A 734 -5.65 -163.30 REMARK 500 GLU A 774 3.06 -65.54 REMARK 500 MET A 775 -4.10 -142.20 REMARK 500 HIS A 784 -114.41 51.59 REMARK 500 LYS A 793 -33.21 -37.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 290 PRO A 291 -33.93 REMARK 500 ASP A 655 PRO A 656 -126.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 901 DBREF 5KTQ A 290 832 UNP P19821 DPO1_THEAQ 290 832 SEQRES 1 A 543 SER PRO LYS ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO SEQRES 2 A 543 GLU GLY ALA PHE VAL GLY PHE VAL LEU SER ARG LYS GLU SEQRES 3 A 543 PRO MET TRP ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG SEQRES 4 A 543 GLY GLY ARG VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA SEQRES 5 A 543 LEU ARG ASP LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS SEQRES 6 A 543 ASP LEU SER VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU SEQRES 7 A 543 PRO PRO GLY ASP ASP PRO MET LEU LEU ALA TYR LEU LEU SEQRES 8 A 543 ASP PRO SER ASN THR THR PRO GLU GLY VAL ALA ARG ARG SEQRES 9 A 543 TYR GLY GLY GLU TRP THR GLU GLU ALA GLY GLU ARG ALA SEQRES 10 A 543 ALA LEU SER GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG SEQRES 11 A 543 LEU GLU GLY GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU SEQRES 12 A 543 VAL GLU ARG PRO LEU SER ALA VAL LEU ALA HIS MET GLU SEQRES 13 A 543 ALA THR GLY VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA SEQRES 14 A 543 LEU SER LEU GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU SEQRES 15 A 543 ALA GLU VAL PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU SEQRES 16 A 543 ASN SER ARG ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU SEQRES 17 A 543 LEU GLY LEU PRO ALA ILE GLY LYS THR GLU LYS THR GLY SEQRES 18 A 543 LYS ARG SER THR SER ALA ALA VAL LEU GLU ALA LEU ARG SEQRES 19 A 543 GLU ALA HIS PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG SEQRES 20 A 543 GLU LEU THR LYS LEU LYS SER THR TYR ILE ASP PRO LEU SEQRES 21 A 543 PRO ASP LEU ILE HIS PRO ARG THR GLY ARG LEU HIS THR SEQRES 22 A 543 ARG PHE ASN GLN THR ALA THR ALA THR GLY ARG LEU SER SEQRES 23 A 543 SER SER ASP PRO ASN LEU GLN ASN ILE PRO VAL ARG THR SEQRES 24 A 543 PRO LEU GLY GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU SEQRES 25 A 543 GLU GLY TRP LEU LEU VAL ALA LEU ASP TYR SER GLN ILE SEQRES 26 A 543 GLU LEU ARG VAL LEU ALA HIS LEU SER GLY ASP GLU ASN SEQRES 27 A 543 LEU ILE ARG VAL PHE GLN GLU GLY ARG ASP ILE HIS THR SEQRES 28 A 543 GLU THR ALA SER TRP MET PHE GLY VAL PRO ARG GLU ALA SEQRES 29 A 543 VAL ASP PRO LEU MET ARG ARG ALA ALA LYS THR ILE ASN SEQRES 30 A 543 PHE GLY VAL LEU TYR GLY MET SER ALA HIS ARG LEU SER SEQRES 31 A 543 GLN GLU LEU ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE SEQRES 32 A 543 ILE GLU ARG TYR PHE GLN SER PHE PRO LYS VAL ARG ALA SEQRES 33 A 543 TRP ILE GLU LYS THR LEU GLU GLU GLY ARG ARG ARG GLY SEQRES 34 A 543 TYR VAL GLU THR LEU PHE GLY ARG ARG ARG TYR VAL PRO SEQRES 35 A 543 ASP LEU GLU ALA ARG VAL LYS SER VAL ARG GLU ALA ALA SEQRES 36 A 543 GLU ARG MET ALA PHE ASN MET PRO VAL GLN GLY THR ALA SEQRES 37 A 543 ALA ASP LEU MET LYS LEU ALA MET VAL LYS LEU PHE PRO SEQRES 38 A 543 ARG LEU GLU GLU MET GLY ALA ARG MET LEU LEU GLN VAL SEQRES 39 A 543 HIS ASP GLU LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA SEQRES 40 A 543 GLU ALA VAL ALA ARG LEU ALA LYS GLU VAL MET GLU GLY SEQRES 41 A 543 VAL TYR PRO LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY SEQRES 42 A 543 ILE GLY GLU ASP TRP LEU SER ALA LYS GLU HET DCP A 901 28 HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 2 DCP C9 H16 N3 O13 P3 HELIX 1 1 PRO A 338 ARG A 343 1 6 HELIX 2 2 ALA A 353 ARG A 362 1 10 HELIX 3 3 PRO A 373 LEU A 380 1 8 HELIX 4 4 PRO A 387 TYR A 394 1 8 HELIX 5 5 ALA A 402 GLU A 421 1 20 HELIX 6 6 GLU A 424 GLU A 432 1 9 HELIX 7 7 GLU A 434 THR A 447 1 14 HELIX 8 8 VAL A 453 ALA A 478 1 26 HELIX 9 9 ARG A 487 LEU A 494 1 8 HELIX 10 10 VAL A 518 LEU A 522 5 5 HELIX 11 11 LEU A 533 TYR A 545 1 13 HELIX 12 12 LEU A 549 LEU A 552 5 4 HELIX 13 13 LEU A 581 ASN A 583 5 3 HELIX 14 14 GLY A 591 ALA A 597 1 7 HELIX 15 15 ILE A 614 SER A 623 1 10 HELIX 16 16 GLU A 626 GLN A 633 1 8 HELIX 17 17 ILE A 638 PHE A 647 1 10 HELIX 18 18 MET A 658 TYR A 671 1 14 HELIX 19 19 ALA A 675 GLU A 681 1 7 HELIX 20 20 TYR A 686 SER A 699 1 14 HELIX 21 21 PRO A 701 ARG A 717 1 17 HELIX 22 22 LYS A 738 GLU A 773 1 36 HELIX 23 23 ALA A 796 GLU A 808 1 13 SHEET 1 A 4 VAL A 819 GLY A 824 0 SHEET 2 A 4 TRP A 604 TYR A 611 -1 N ASP A 610 O GLU A 820 SHEET 3 A 4 GLU A 786 PRO A 792 -1 N ALA A 791 O LEU A 605 SHEET 4 A 4 ALA A 777 VAL A 783 -1 N VAL A 783 O GLU A 786 SHEET 1 B 2 TYR A 719 GLU A 721 0 SHEET 2 B 2 ARG A 727 TYR A 729 -1 N ARG A 728 O VAL A 720 SHEET 1 C 2 PHE A 306 LEU A 311 0 SHEET 2 C 2 LEU A 321 ALA A 327 -1 N ALA A 327 O PHE A 306 CISPEP 1 TRP A 299 PRO A 300 0 -4.83 CISPEP 2 ASP A 578 PRO A 579 0 1.20 SITE 1 AC1 5 GLN A 613 HIS A 639 ARG A 659 LYS A 663 SITE 2 AC1 5 PHE A 667 CRYST1 109.400 137.000 45.800 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021834 0.00000