PDB Short entry for 5KUM HEADER METAL TRANSPORT 13-JUL-16 5KUM TITLE CRYSTAL STRUCTURE OF INWARD RECTIFIER KIR2.2 K62W MUTANT IN COMPLEX TITLE 2 WITH PIP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 38-369; COMPND 5 SYNONYM: INWARD RECTIFIER K(+) CHANNEL KIR2.2,POTASSIUM CHANNEL, COMPND 6 INWARDLY RECTIFYING SUBFAMILY J MEMBER 12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: KCNJ12; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS METAL TRANSPORT, KIR 2.2 K62W MUTANT STRUCTURE EXPDTA X-RAY DIFFRACTION AUTHOR S.-J.LEE,F.REN,S.HEYMAN,P.YUAN,C.G.NICHOLS REVDAT 4 04-OCT-23 5KUM 1 REMARK LINK REVDAT 3 07-SEP-16 5KUM 1 JRNL REVDAT 2 31-AUG-16 5KUM 1 JRNL REVDAT 1 10-AUG-16 5KUM 0 JRNL AUTH S.J.LEE,F.REN,E.M.ZANGERL-PLESSL,S.HEYMAN, JRNL AUTH 2 A.STARY-WEINZINGER,P.YUAN,C.G.NICHOLS JRNL TITL STRUCTURAL BASIS OF CONTROL OF INWARD RECTIFIER KIR2 CHANNEL JRNL TITL 2 GATING BY BULK ANIONIC PHOSPHOLIPIDS. JRNL REF J.GEN.PHYSIOL. V. 148 227 2016 JRNL REFN ESSN 1540-7748 JRNL PMID 27527100 JRNL DOI 10.1085/JGP.201611616 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 713 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.37000 REMARK 3 B22 (A**2) : 4.37000 REMARK 3 B33 (A**2) : -8.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.535 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.326 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2725 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2582 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3703 ; 1.444 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5930 ; 0.758 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 7.164 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.124 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;15.859 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.203 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2995 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 639 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1303 ; 4.309 ; 7.248 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1302 ; 4.298 ; 7.246 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1627 ; 6.696 ;10.866 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1628 ; 6.694 ;10.870 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1422 ; 4.292 ; 7.919 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1423 ; 4.292 ; 7.920 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2077 ; 7.035 ;11.722 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3167 ;10.196 ;58.802 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3162 ;10.147 ;58.829 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.3-6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 91.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5KUK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, KCL, PEG 400, EVAPORATION, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.65150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.65150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.78600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.65150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.65150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.78600 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 40.65150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 40.65150 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 91.78600 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 40.65150 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 40.65150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 91.78600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 402 LIES ON A SPECIAL POSITION. REMARK 375 K K A 403 LIES ON A SPECIAL POSITION. REMARK 375 K K A 404 LIES ON A SPECIAL POSITION. REMARK 375 K K A 405 LIES ON A SPECIAL POSITION. REMARK 375 K K A 406 LIES ON A SPECIAL POSITION. REMARK 375 K K A 407 LIES ON A SPECIAL POSITION. REMARK 375 K K A 408 LIES ON A SPECIAL POSITION. REMARK 375 K K A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 36 REMARK 465 ALA A 37 REMARK 465 ARG A 38 REMARK 465 ARG A 39 REMARK 465 LYS A 40 REMARK 465 PHE A 367 REMARK 465 LEU A 368 REMARK 465 LEU A 369 REMARK 465 SER A 370 REMARK 465 ASN A 371 REMARK 465 SER A 372 REMARK 465 LEU A 373 REMARK 465 GLU A 374 REMARK 465 VAL A 375 REMARK 465 LEU A 376 REMARK 465 PHE A 377 REMARK 465 GLN A 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 LYS A 366 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 52.63 -116.58 REMARK 500 ASP A 69 53.41 -110.88 REMARK 500 ASN A 113 77.24 -117.98 REMARK 500 PHE A 120 118.52 -163.92 REMARK 500 ALA A 203 171.04 178.31 REMARK 500 VAL A 265 -79.47 -103.11 REMARK 500 SER A 319 -3.20 -59.34 REMARK 500 SER A 353 -6.07 -59.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 58 MET A 59 147.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PIO A 401 REMARK 610 DMU A 410 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 143 O REMARK 620 2 THR A 143 O 0.0 REMARK 620 3 ILE A 144 O 69.8 69.8 REMARK 620 4 ILE A 144 O 69.8 69.8 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 143 O REMARK 620 2 THR A 143 OG1 56.4 REMARK 620 3 THR A 143 O 0.0 56.4 REMARK 620 4 THR A 143 OG1 56.4 0.0 56.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 144 O REMARK 620 2 ILE A 144 O 0.0 REMARK 620 3 GLY A 145 O 64.5 64.5 REMARK 620 4 GLY A 145 O 64.5 64.5 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 145 O REMARK 620 2 GLY A 145 O 0.0 REMARK 620 3 TYR A 146 O 70.6 70.6 REMARK 620 4 TYR A 146 O 70.6 70.6 0.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMU A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KUK RELATED DB: PDB DBREF 5KUM A 38 369 UNP F1NHE9 KCJ12_CHICK 38 369 SEQADV 5KUM MET A 36 UNP F1NHE9 INITIATING METHIONINE SEQADV 5KUM ALA A 37 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM TRP A 62 UNP F1NHE9 LYS 62 ENGINEERED MUTATION SEQADV 5KUM SER A 370 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM ASN A 371 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM SER A 372 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM LEU A 373 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM GLU A 374 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM VAL A 375 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM LEU A 376 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM PHE A 377 UNP F1NHE9 EXPRESSION TAG SEQADV 5KUM GLN A 378 UNP F1NHE9 EXPRESSION TAG SEQRES 1 A 343 MET ALA ARG ARG LYS CYS ARG ASN ARG PHE VAL LYS LYS SEQRES 2 A 343 ASN GLY GLN CYS ASN VAL GLU PHE THR ASN MET ASP ASP SEQRES 3 A 343 TRP PRO GLN ARG TYR ILE ALA ASP MET PHE THR THR CYS SEQRES 4 A 343 VAL ASP ILE ARG TRP ARG TYR MET LEU LEU LEU PHE SER SEQRES 5 A 343 LEU ALA PHE LEU VAL SER TRP LEU LEU PHE GLY LEU ILE SEQRES 6 A 343 PHE TRP LEU ILE ALA LEU ILE HIS GLY ASP LEU GLU ASN SEQRES 7 A 343 PRO GLY GLY ASP ASP THR PHE LYS PRO CYS VAL LEU GLN SEQRES 8 A 343 VAL ASN GLY PHE VAL ALA ALA PHE LEU PHE SER ILE GLU SEQRES 9 A 343 THR GLN THR THR ILE GLY TYR GLY PHE ARG CYS VAL THR SEQRES 10 A 343 GLU GLU CYS PRO LEU ALA VAL PHE MET VAL VAL VAL GLN SEQRES 11 A 343 SER ILE VAL GLY CYS ILE ILE ASP SER PHE MET ILE GLY SEQRES 12 A 343 ALA ILE MET ALA LYS MET ALA ARG PRO LYS LYS ARG ALA SEQRES 13 A 343 GLN THR LEU LEU PHE SER HIS ASN ALA VAL VAL ALA MET SEQRES 14 A 343 ARG ASP GLY LYS LEU CYS LEU MET TRP ARG VAL GLY ASN SEQRES 15 A 343 LEU ARG LYS SER HIS ILE VAL GLU ALA HIS VAL ARG ALA SEQRES 16 A 343 GLN LEU ILE LYS PRO ARG ILE THR GLU GLU GLY GLU TYR SEQRES 17 A 343 ILE PRO LEU ASP GLN ILE ASP ILE ASP VAL GLY PHE ASP SEQRES 18 A 343 LYS GLY LEU ASP ARG ILE PHE LEU VAL SER PRO ILE THR SEQRES 19 A 343 ILE LEU HIS GLU ILE ASN GLU ASP SER PRO LEU PHE GLY SEQRES 20 A 343 ILE SER ARG GLN ASP LEU GLU THR ASP ASP PHE GLU ILE SEQRES 21 A 343 VAL VAL ILE LEU GLU GLY MET VAL GLU ALA THR ALA MET SEQRES 22 A 343 THR THR GLN ALA ARG SER SER TYR LEU ALA SER GLU ILE SEQRES 23 A 343 LEU TRP GLY HIS ARG PHE GLU PRO VAL LEU PHE GLU GLU SEQRES 24 A 343 LYS ASN GLN TYR LYS VAL ASP TYR SER HIS PHE HIS LYS SEQRES 25 A 343 THR TYR GLU VAL PRO SER THR PRO ARG CYS SER ALA LYS SEQRES 26 A 343 ASP LEU VAL GLU ASN LYS PHE LEU LEU SER ASN SER LEU SEQRES 27 A 343 GLU VAL LEU PHE GLN HET PIO A 401 26 HET K A 402 1 HET K A 403 1 HET K A 404 1 HET K A 405 1 HET K A 406 1 HET K A 407 1 HET K A 408 1 HET K A 409 1 HET DMU A 410 24 HETNAM PIO [(2R)-2-OCTANOYLOXY-3-[OXIDANYL-[(1R,2R,3S,4R,5R,6S)-2, HETNAM 2 PIO 3,6-TRIS(OXIDANYL)-4,5-DIPHOSPHONOOXY-CYCLOHEXYL]OXY- HETNAM 3 PIO PHOSPHORYL]OXY-PROPYL] OCTANOATE HETNAM K POTASSIUM ION HETNAM DMU DECYL-BETA-D-MALTOPYRANOSIDE HETSYN PIO DIOCTANOYL L-ALPHA-PHOSPHATIDYL-D-MYO-INOSITOL 4,5- HETSYN 2 PIO DIPHOSPHATE HETSYN DMU DECYLMALTOSIDE FORMUL 2 PIO C25 H49 O19 P3 FORMUL 3 K 8(K 1+) FORMUL 11 DMU C22 H42 O11 FORMUL 12 HOH *38(H2 O) HELIX 1 AA1 ASP A 61 ASP A 69 1 9 HELIX 2 AA2 ASP A 69 ILE A 77 1 9 HELIX 3 AA3 ARG A 78 GLY A 109 1 32 HELIX 4 AA4 PHE A 130 THR A 142 1 13 HELIX 5 AA5 CYS A 155 ARG A 186 1 32 HELIX 6 AA6 PRO A 187 GLN A 192 5 6 HELIX 7 AA7 GLY A 254 GLY A 258 5 5 HELIX 8 AA8 SER A 284 ASP A 291 1 8 HELIX 9 AA9 SER A 343 HIS A 346 5 4 HELIX 10 AB1 SER A 358 LYS A 366 1 9 SHEET 1 AA1 2 VAL A 124 LEU A 125 0 SHEET 2 AA1 2 CYS A 150 VAL A 151 -1 O CYS A 150 N LEU A 125 SHEET 1 AA2 3 LEU A 194 PHE A 196 0 SHEET 2 AA2 3 LYS A 208 ASN A 217 -1 O GLY A 216 N LEU A 195 SHEET 3 AA2 3 ILE A 268 GLU A 273 -1 O ILE A 270 N TRP A 213 SHEET 1 AA3 4 LEU A 194 PHE A 196 0 SHEET 2 AA3 4 LYS A 208 ASN A 217 -1 O GLY A 216 N LEU A 195 SHEET 3 AA3 4 ALA A 200 ARG A 205 -1 N ALA A 203 O CYS A 210 SHEET 4 AA3 4 ILE A 321 TRP A 323 1 O LEU A 322 N ALA A 200 SHEET 1 AA4 4 TYR A 243 ASP A 250 0 SHEET 2 AA4 4 ILE A 223 ILE A 237 -1 N LEU A 232 O ILE A 249 SHEET 3 AA4 4 GLU A 294 VAL A 303 -1 O GLU A 294 N ILE A 233 SHEET 4 AA4 4 MET A 308 LEU A 317 -1 O THR A 310 N GLY A 301 SHEET 1 AA5 2 HIS A 325 PHE A 327 0 SHEET 2 AA5 2 THR A 348 GLU A 350 -1 O TYR A 349 N ARG A 326 SHEET 1 AA6 2 LEU A 331 GLU A 333 0 SHEET 2 AA6 2 TYR A 338 VAL A 340 -1 O LYS A 339 N PHE A 332 SSBOND 1 CYS A 123 CYS A 155 1555 1555 2.04 LINK O THR A 143 K K A 404 1555 1555 2.74 LINK O THR A 143 K K A 404 1555 2555 2.74 LINK O THR A 143 K K A 405 1555 1555 2.75 LINK OG1 THR A 143 K K A 405 1555 1555 2.84 LINK O THR A 143 K K A 405 1555 2555 2.75 LINK OG1 THR A 143 K K A 405 1555 2555 2.84 LINK O ILE A 144 K K A 403 1555 1555 3.10 LINK O ILE A 144 K K A 403 1555 2555 3.10 LINK O ILE A 144 K K A 404 1555 1555 2.97 LINK O ILE A 144 K K A 404 1555 2555 2.97 LINK O GLY A 145 K K A 402 1555 1555 2.92 LINK O GLY A 145 K K A 402 1555 2555 2.92 LINK O GLY A 145 K K A 403 1555 1555 2.60 LINK O GLY A 145 K K A 403 1555 2555 2.60 LINK O TYR A 146 K K A 402 1555 1555 3.09 LINK O TYR A 146 K K A 402 1555 2555 3.09 SITE 1 AC1 7 ARG A 78 TRP A 79 ARG A 80 LYS A 183 SITE 2 AC1 7 ARG A 186 LYS A 188 LYS A 189 SITE 1 AC2 3 GLY A 145 TYR A 146 K A 403 SITE 1 AC3 4 ILE A 144 GLY A 145 K A 402 K A 404 SITE 1 AC4 4 THR A 143 ILE A 144 K A 403 K A 405 SITE 1 AC5 2 THR A 143 K A 404 SITE 1 AC6 6 PHE A 56 THR A 57 ASN A 58 MET A 59 SITE 2 AC6 6 TRP A 62 TYR A 66 CRYST1 81.303 81.303 183.572 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005447 0.00000