PDB Short entry for 5L0R HEADER TRANSFERASE 28-JUL-16 5L0R TITLE HUMAN POGLUT1 IN COMPLEX WITH NOTCH1 EGF12 AND UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN O-GLUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAP10-LIKE 46 KDA PROTEIN,HCLP46,KTEL MOTIF-CONTAINING COMPND 5 PROTEIN 1,MYELODYSPLASTIC SYNDROMES RELATIVE PROTEIN,O- COMPND 6 GLUCOSYLTRANSFERASE RUMI HOMOLOG,HRUMI,PROTEIN O-XYLOSYLTRANSFERASE; COMPND 7 EC: 2.4.1.-,2.4.2.26; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: HN1,TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POGLUT1, C3ORF9, CLP46, KTELC1, MDSRP, MDS010, UNQ490/PRO1006; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: NOTCH1, TAN1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS TRANSFERASE GLYCOSYLTRANSFERASE GT-B GLUCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 4 24-MAR-21 5L0R 1 SOURCE HETSYN REVDAT 3 29-JUL-20 5L0R 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 30-AUG-17 5L0R 1 JRNL REVDAT 1 09-AUG-17 5L0R 0 JRNL AUTH Z.LI,M.FISCHER,M.SATKUNARAJAH,D.ZHOU,S.G.WITHERS,J.M.RINI JRNL TITL STRUCTURAL BASIS OF NOTCH O-GLUCOSYLATION AND O-XYLOSYLATION JRNL TITL 2 BY MAMMALIAN PROTEIN-O-GLUCOSYLTRANSFERASE 1 (POGLUT1). JRNL REF NAT COMMUN V. 8 185 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28775322 JRNL DOI 10.1038/S41467-017-00255-7 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 68829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4664 - 4.3846 0.96 2742 145 0.1568 0.1702 REMARK 3 2 4.3846 - 3.4807 0.97 2660 140 0.1237 0.1537 REMARK 3 3 3.4807 - 3.0408 0.97 2646 139 0.1363 0.1413 REMARK 3 4 3.0408 - 2.7628 0.98 2652 139 0.1397 0.1822 REMARK 3 5 2.7628 - 2.5648 0.99 2643 140 0.1390 0.1734 REMARK 3 6 2.5648 - 2.4136 0.99 2642 139 0.1337 0.1516 REMARK 3 7 2.4136 - 2.2928 0.99 2658 140 0.1275 0.1440 REMARK 3 8 2.2928 - 2.1930 0.99 2606 137 0.1317 0.1658 REMARK 3 9 2.1930 - 2.1085 1.00 2679 141 0.1318 0.1565 REMARK 3 10 2.1085 - 2.0358 1.00 2618 138 0.1366 0.1352 REMARK 3 11 2.0358 - 1.9721 1.00 2648 139 0.1376 0.1625 REMARK 3 12 1.9721 - 1.9158 1.00 2628 138 0.1407 0.1888 REMARK 3 13 1.9158 - 1.8653 1.00 2649 140 0.1414 0.1647 REMARK 3 14 1.8653 - 1.8198 1.00 2619 138 0.1515 0.1836 REMARK 3 15 1.8198 - 1.7784 1.00 2644 139 0.1588 0.1702 REMARK 3 16 1.7784 - 1.7406 1.00 2641 138 0.1684 0.2090 REMARK 3 17 1.7406 - 1.7058 1.00 2614 138 0.1724 0.1854 REMARK 3 18 1.7058 - 1.6736 1.00 2641 139 0.1886 0.1986 REMARK 3 19 1.6736 - 1.6437 1.00 2617 137 0.1968 0.1841 REMARK 3 20 1.6437 - 1.6158 1.00 2660 141 0.2068 0.2193 REMARK 3 21 1.6158 - 1.5898 1.00 2623 138 0.2181 0.2442 REMARK 3 22 1.5898 - 1.5653 1.00 2599 137 0.2373 0.2559 REMARK 3 23 1.5653 - 1.5423 0.99 2594 136 0.2553 0.3038 REMARK 3 24 1.5423 - 1.5206 0.91 2416 128 0.2804 0.2871 REMARK 3 25 1.5206 - 1.5000 0.86 2248 118 0.3045 0.2709 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3467 REMARK 3 ANGLE : 1.299 4716 REMARK 3 CHIRALITY : 0.072 488 REMARK 3 PLANARITY : 0.010 601 REMARK 3 DIHEDRAL : 14.893 2080 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5857 29.7995 34.6921 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.4228 REMARK 3 T33: 0.1578 T12: -0.0238 REMARK 3 T13: 0.0224 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.6322 L22: 0.9968 REMARK 3 L33: 1.7436 L12: -0.9227 REMARK 3 L13: 0.7210 L23: -0.2762 REMARK 3 S TENSOR REMARK 3 S11: -0.1191 S12: -0.3554 S13: 0.0200 REMARK 3 S21: 0.0886 S22: 0.1457 S23: 0.1729 REMARK 3 S31: 0.0628 S32: -0.6882 S33: -0.0502 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1854 12.6432 31.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.3141 REMARK 3 T33: 0.2587 T12: 0.1290 REMARK 3 T13: -0.0593 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.1412 L22: 2.9602 REMARK 3 L33: 4.2746 L12: -0.6658 REMARK 3 L13: -0.3529 L23: -0.8019 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.2222 S13: -0.2451 REMARK 3 S21: -0.0102 S22: -0.0418 S23: -0.1352 REMARK 3 S31: 0.5580 S32: 0.5148 S33: 0.0206 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7597 19.7490 26.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1351 REMARK 3 T33: 0.1424 T12: 0.0299 REMARK 3 T13: -0.0226 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.7689 L22: 1.5173 REMARK 3 L33: 3.3439 L12: -0.5971 REMARK 3 L13: 0.2772 L23: -0.7014 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.1566 S13: -0.1511 REMARK 3 S21: 0.0740 S22: 0.0978 S23: -0.0248 REMARK 3 S31: 0.2667 S32: 0.1864 S33: -0.0809 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8180 38.8103 16.0966 REMARK 3 T TENSOR REMARK 3 T11: 0.2319 T22: 0.1087 REMARK 3 T33: 0.2128 T12: -0.0359 REMARK 3 T13: 0.0145 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.1272 L22: 1.0521 REMARK 3 L33: 1.3376 L12: -1.2184 REMARK 3 L13: -0.2418 L23: 0.7197 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 0.1602 S13: 0.4674 REMARK 3 S21: -0.1660 S22: 0.0611 S23: -0.1042 REMARK 3 S31: -0.4290 S32: 0.1191 S33: -0.0234 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3189 29.7341 8.8107 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.1890 REMARK 3 T33: 0.1058 T12: 0.0060 REMARK 3 T13: 0.0082 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 3.0603 L22: 2.4746 REMARK 3 L33: 2.7866 L12: 0.1694 REMARK 3 L13: 0.5027 L23: 1.1957 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: 0.2915 S13: 0.0245 REMARK 3 S21: -0.0332 S22: -0.1363 S23: 0.1945 REMARK 3 S31: -0.0770 S32: -0.3081 S33: 0.0095 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7926 22.0780 2.6479 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.2532 REMARK 3 T33: 0.1295 T12: 0.0082 REMARK 3 T13: -0.0290 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 4.1798 L22: 0.5798 REMARK 3 L33: 2.6978 L12: 1.0965 REMARK 3 L13: -0.0908 L23: 0.8309 REMARK 3 S TENSOR REMARK 3 S11: 0.1906 S12: 0.8387 S13: -0.4308 REMARK 3 S21: -0.1122 S22: -0.0926 S23: -0.0178 REMARK 3 S31: 0.1197 S32: -0.0999 S33: -0.1013 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2189 29.3643 17.4971 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1076 REMARK 3 T33: 0.1231 T12: 0.0038 REMARK 3 T13: -0.0039 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.7601 L22: 0.8381 REMARK 3 L33: 2.6174 L12: -0.0857 REMARK 3 L13: -0.0289 L23: 0.1217 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.0408 S13: 0.0196 REMARK 3 S21: 0.0012 S22: 0.0228 S23: 0.0291 REMARK 3 S31: -0.0553 S32: -0.1597 S33: -0.0658 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4728 28.2580 16.8414 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.2801 REMARK 3 T33: 0.1672 T12: -0.0120 REMARK 3 T13: 0.0088 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.7809 L22: 7.8450 REMARK 3 L33: 4.1718 L12: -1.6726 REMARK 3 L13: 0.1185 L23: 1.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.3092 S13: -0.1192 REMARK 3 S21: 0.0182 S22: -0.0685 S23: 0.4112 REMARK 3 S31: 0.0506 S32: -0.6012 S33: 0.0322 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1118 40.4215 25.5226 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.1735 REMARK 3 T33: 0.2281 T12: 0.0623 REMARK 3 T13: 0.0352 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 5.5025 L22: 2.6455 REMARK 3 L33: 7.0694 L12: -1.2786 REMARK 3 L13: 6.0812 L23: -1.2032 REMARK 3 S TENSOR REMARK 3 S11: -0.2318 S12: -0.4404 S13: 0.7275 REMARK 3 S21: 0.2548 S22: 0.0908 S23: 0.1753 REMARK 3 S31: -0.4529 S32: -0.4757 S33: 0.1960 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3067 22.7383 35.2708 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.3209 REMARK 3 T33: 0.1755 T12: 0.0351 REMARK 3 T13: -0.0480 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 3.4555 L22: 2.6553 REMARK 3 L33: 2.3621 L12: -1.5942 REMARK 3 L13: 0.5207 L23: -0.9147 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: -0.3908 S13: -0.0485 REMARK 3 S21: 0.2495 S22: 0.1054 S23: -0.2638 REMARK 3 S31: 0.0714 S32: 0.4499 S33: 0.0496 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 452 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9320 17.2574 7.9705 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.1722 REMARK 3 T33: 0.1642 T12: 0.0422 REMARK 3 T13: -0.0156 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 9.2712 L22: 5.6502 REMARK 3 L33: 6.6112 L12: 1.2831 REMARK 3 L13: -1.9687 L23: 2.3356 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.0130 S13: -0.6199 REMARK 3 S21: 0.2361 S22: -0.0528 S23: 0.0818 REMARK 3 S31: 0.7215 S32: 0.1624 S33: 0.1484 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 471 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4751 12.1114 8.9572 REMARK 3 T TENSOR REMARK 3 T11: 0.5935 T22: 0.2497 REMARK 3 T33: 0.4333 T12: 0.0778 REMARK 3 T13: 0.0217 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 7.6712 L22: 3.6855 REMARK 3 L33: 2.4337 L12: 1.7044 REMARK 3 L13: 3.6107 L23: 2.3545 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: -0.1759 S13: -1.5916 REMARK 3 S21: 0.6574 S22: 0.0246 S23: -0.8192 REMARK 3 S31: 1.8516 S32: 0.0921 S33: 0.3018 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 478 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0162 24.0250 5.3921 REMARK 3 T TENSOR REMARK 3 T11: 0.2352 T22: 0.3800 REMARK 3 T33: 0.2756 T12: -0.0207 REMARK 3 T13: 0.0417 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 7.0509 L22: 5.9648 REMARK 3 L33: 1.9992 L12: -1.4967 REMARK 3 L13: -1.7936 L23: 1.6273 REMARK 3 S TENSOR REMARK 3 S11: 0.2438 S12: 0.0461 S13: 0.4785 REMARK 3 S21: -0.2613 S22: 0.4209 S23: -0.4611 REMARK 3 S31: -0.2512 S32: 1.1300 S33: -0.6059 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000223028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.86400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG5000 MME, 50 MM MES PH 6.5, 2MM REMARK 280 CACL2, 250MM NACL, 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.64000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.64000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLY B 450 REMARK 465 SER B 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 30 N CA CB OG REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ASP B 452 N CA CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 351 O HOH A 502 1.43 REMARK 500 H GLY A 379 O HOH A 504 1.55 REMARK 500 H GLY B 472 O HOH B 3101 1.58 REMARK 500 O HOH A 510 O HOH A 762 1.99 REMARK 500 O HOH A 510 O HOH A 756 2.00 REMARK 500 O HOH A 516 O HOH A 705 2.06 REMARK 500 O HOH A 765 O HOH A 799 2.14 REMARK 500 O HOH B 3123 O HOH B 3139 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 582 O HOH A 613 2564 2.09 REMARK 500 O HOH A 722 O HOH A 766 2565 2.09 REMARK 500 O HOH A 643 O HOH A 729 2564 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 183 69.37 39.51 REMARK 500 ALA A 275 -142.02 -128.35 REMARK 500 ASP A 295 26.15 -143.08 REMARK 500 TRP A 308 -20.44 73.65 REMARK 500 ILE B 471 101.10 -59.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B3001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 455 OE2 REMARK 620 2 ASP B 469 OD1 149.7 REMARK 620 3 GLU B 473 O 85.8 74.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L0S RELATED DB: PDB REMARK 900 RELATED ID: 5L0T RELATED DB: PDB REMARK 900 RELATED ID: 5L0U RELATED DB: PDB REMARK 900 RELATED ID: 5L0V RELATED DB: PDB DBREF 5L0R A 29 385 UNP Q8NBL1 PGLT1_HUMAN 29 385 DBREF 5L0R B 452 491 UNP P46531 NOTC1_HUMAN 452 491 SEQADV 5L0R GLY B 450 UNP P46531 EXPRESSION TAG SEQADV 5L0R SER B 451 UNP P46531 EXPRESSION TAG SEQRES 1 A 357 GLY SER LYS TRP LYS VAL PHE ILE ASP GLN ILE ASN ARG SEQRES 2 A 357 SER LEU GLU ASN TYR GLU PRO CYS SER SER GLN ASN CYS SEQRES 3 A 357 SER CYS TYR HIS GLY VAL ILE GLU GLU ASP LEU THR PRO SEQRES 4 A 357 PHE ARG GLY GLY ILE SER ARG LYS MET MET ALA GLU VAL SEQRES 5 A 357 VAL ARG ARG LYS LEU GLY THR HIS TYR GLN ILE THR LYS SEQRES 6 A 357 ASN ARG LEU TYR ARG GLU ASN ASP CYS MET PHE PRO SER SEQRES 7 A 357 ARG CYS SER GLY VAL GLU HIS PHE ILE LEU GLU VAL ILE SEQRES 8 A 357 GLY ARG LEU PRO ASP MET GLU MET VAL ILE ASN VAL ARG SEQRES 9 A 357 ASP TYR PRO GLN VAL PRO LYS TRP MET GLU PRO ALA ILE SEQRES 10 A 357 PRO VAL PHE SER PHE SER LYS THR SER GLU TYR HIS ASP SEQRES 11 A 357 ILE MET TYR PRO ALA TRP THR PHE TRP GLU GLY GLY PRO SEQRES 12 A 357 ALA VAL TRP PRO ILE TYR PRO THR GLY LEU GLY ARG TRP SEQRES 13 A 357 ASP LEU PHE ARG GLU ASP LEU VAL ARG SER ALA ALA GLN SEQRES 14 A 357 TRP PRO TRP LYS LYS LYS ASN SER THR ALA TYR PHE ARG SEQRES 15 A 357 GLY SER ARG THR SER PRO GLU ARG ASP PRO LEU ILE LEU SEQRES 16 A 357 LEU SER ARG LYS ASN PRO LYS LEU VAL ASP ALA GLU TYR SEQRES 17 A 357 THR LYS ASN GLN ALA TRP LYS SER MET LYS ASP THR LEU SEQRES 18 A 357 GLY LYS PRO ALA ALA LYS ASP VAL HIS LEU VAL ASP HIS SEQRES 19 A 357 CYS LYS TYR LYS TYR LEU PHE ASN PHE ARG GLY VAL ALA SEQRES 20 A 357 ALA SER PHE ARG PHE LYS HIS LEU PHE LEU CYS GLY SER SEQRES 21 A 357 LEU VAL PHE HIS VAL GLY ASP GLU TRP LEU GLU PHE PHE SEQRES 22 A 357 TYR PRO GLN LEU LYS PRO TRP VAL HIS TYR ILE PRO VAL SEQRES 23 A 357 LYS THR ASP LEU SER ASN VAL GLN GLU LEU LEU GLN PHE SEQRES 24 A 357 VAL LYS ALA ASN ASP ASP VAL ALA GLN GLU ILE ALA GLU SEQRES 25 A 357 ARG GLY SER GLN PHE ILE ARG ASN HIS LEU GLN MET ASP SEQRES 26 A 357 ASP ILE THR CYS TYR TRP GLU ASN LEU LEU SER GLU TYR SEQRES 27 A 357 SER LYS PHE LEU SER TYR ASN VAL THR ARG ARG LYS GLY SEQRES 28 A 357 TYR ASP GLN ILE ILE PRO SEQRES 1 B 42 GLY SER ASP VAL ASN GLU CYS VAL SER ASN PRO CYS GLN SEQRES 2 B 42 ASN ASP ALA THR CYS LEU ASP GLN ILE GLY GLU PHE GLN SEQRES 3 B 42 CYS ILE CYS MET PRO GLY TYR GLU GLY VAL HIS CYS GLU SEQRES 4 B 42 VAL ASN THR HET NAG A 401 28 HET NAG A 402 28 HET UDP A 403 25 HET GOL A 404 6 HET CL A 405 1 HET CA B3001 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 UDP C9 H14 N2 O12 P2 FORMUL 6 GOL C3 H8 O3 FORMUL 7 CL CL 1- FORMUL 8 CA CA 2+ FORMUL 9 HOH *351(H2 O) HELIX 1 AA1 TRP A 32 TYR A 46 1 15 HELIX 2 AA2 ASN A 53 CYS A 56 5 4 HELIX 3 AA3 TYR A 57 THR A 66 1 10 HELIX 4 AA4 PRO A 67 ARG A 69 5 3 HELIX 5 AA5 SER A 73 ARG A 83 1 11 HELIX 6 AA6 PHE A 104 ILE A 119 1 16 HELIX 7 AA7 GLY A 120 LEU A 122 5 3 HELIX 8 AA8 ALA A 163 TRP A 167 5 5 HELIX 9 AA9 ARG A 183 TRP A 198 1 16 HELIX 10 AB1 PRO A 199 LYS A 203 5 5 HELIX 11 AB2 SER A 215 GLU A 217 5 3 HELIX 12 AB3 ARG A 218 ASN A 228 1 11 HELIX 13 AB4 SER A 244 LEU A 249 5 6 HELIX 14 AB5 HIS A 258 CYS A 263 5 6 HELIX 15 AB6 PHE A 278 CYS A 286 1 9 HELIX 16 AB7 PHE A 301 LEU A 305 5 5 HELIX 17 AB8 ASN A 320 ASN A 331 1 12 HELIX 18 AB9 ASN A 331 LEU A 350 1 20 HELIX 19 AC1 GLN A 351 LYS A 368 1 18 HELIX 20 AC2 ASN B 454 ASN B 459 5 6 SHEET 1 AA1 4 MET A 125 ILE A 129 0 SHEET 2 AA1 4 THR A 87 THR A 92 -1 N TYR A 89 O MET A 127 SHEET 3 AA1 4 ARG A 95 ARG A 98 -1 O TYR A 97 N GLN A 90 SHEET 4 AA1 4 ASP A 381 ILE A 383 -1 O ILE A 383 N LEU A 96 SHEET 1 AA2 2 PHE A 148 SER A 149 0 SHEET 2 AA2 2 ILE A 159 MET A 160 1 O ILE A 159 N SER A 149 SHEET 1 AA3 2 ALA A 207 GLY A 211 0 SHEET 2 AA3 2 VAL A 232 TYR A 236 1 O ASP A 233 N ALA A 207 SHEET 1 AA4 3 TYR A 267 ASN A 270 0 SHEET 2 AA4 3 LEU A 289 VAL A 293 1 O VAL A 293 N ASN A 270 SHEET 3 AA4 3 ILE A 312 VAL A 314 1 O ILE A 312 N VAL A 290 SHEET 1 AA5 2 THR B 466 GLN B 470 0 SHEET 2 AA5 2 GLU B 473 ILE B 477 -1 O ILE B 477 N THR B 466 SHEET 1 AA6 2 TYR B 482 GLU B 483 0 SHEET 2 AA6 2 VAL B 489 ASN B 490 -1 O VAL B 489 N GLU B 483 SSBOND 1 CYS A 49 CYS A 56 1555 1555 2.03 SSBOND 2 CYS A 54 CYS A 357 1555 1555 2.10 SSBOND 3 CYS A 102 CYS A 108 1555 1555 2.04 SSBOND 4 CYS A 263 CYS A 286 1555 1555 2.10 SSBOND 5 CYS B 456 CYS B 467 1555 1555 2.05 SSBOND 6 CYS B 461 CYS B 476 1555 1555 2.05 SSBOND 7 CYS B 478 CYS B 487 1555 1555 2.06 LINK ND2 ASN A 53 C1 NAG A 401 1555 1555 1.42 LINK ND2 ASN A 204 C1 NAG A 402 1555 1555 1.43 LINK OE2 GLU B 455 CA CA B3001 1555 1555 2.47 LINK OD1 ASP B 469 CA CA B3001 1555 1555 2.38 LINK O GLU B 473 CA CA B3001 1555 1555 3.06 CISPEP 1 GLU A 142 PRO A 143 0 -5.66 CISPEP 2 TRP A 174 PRO A 175 0 0.52 CISPEP 3 ILE A 384 PRO A 385 0 3.67 CRYST1 70.580 73.560 83.280 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012008 0.00000