PDB Short entry for 5L0T HEADER TRANSFERASE 28-JUL-16 5L0T TITLE HUMAN POGLUT1 IN COMPLEX WITH EGF(+) AND UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN O-GLUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAP10-LIKE 46 KDA PROTEIN,HCLP46,KTEL MOTIF-CONTAINING COMPND 5 PROTEIN 1,MYELODYSPLASTIC SYNDROMES RELATIVE PROTEIN,O- COMPND 6 GLUCOSYLTRANSFERASE RUMI HOMOLOG,HRUMI,PROTEIN O-XYLOSYLTRANSFERASE; COMPND 7 EC: 2.4.1.-,2.4.2.26; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: EGF(+); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POGLUT1, C3ORF9, CLP46, KTELC1, MDSRP, MDS010, UNQ490/PRO1006; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS TRANSFERASE GLYCOSYLTRANSFERASE GT-B GLUCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 4 24-MAR-21 5L0T 1 SOURCE HETSYN REVDAT 3 29-JUL-20 5L0T 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 30-AUG-17 5L0T 1 JRNL REVDAT 1 09-AUG-17 5L0T 0 JRNL AUTH Z.LI,M.FISCHER,M.SATKUNARAJAH,D.ZHOU,S.G.WITHERS,J.M.RINI JRNL TITL STRUCTURAL BASIS OF NOTCH O-GLUCOSYLATION AND O-XYLOSYLATION JRNL TITL 2 BY MAMMALIAN PROTEIN-O-GLUCOSYLTRANSFERASE 1 (POGLUT1). JRNL REF NAT COMMUN V. 8 185 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28775322 JRNL DOI 10.1038/S41467-017-00255-7 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 83343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0049 - 4.4419 1.00 2850 151 0.1480 0.1614 REMARK 3 2 4.4419 - 3.5261 1.00 2736 144 0.1337 0.1385 REMARK 3 3 3.5261 - 3.0805 1.00 2699 142 0.1462 0.1461 REMARK 3 4 3.0805 - 2.7989 1.00 2659 139 0.1470 0.1557 REMARK 3 5 2.7989 - 2.5983 1.00 2652 140 0.1429 0.1672 REMARK 3 6 2.5983 - 2.4452 1.00 2679 141 0.1415 0.1716 REMARK 3 7 2.4452 - 2.3227 1.00 2650 140 0.1376 0.1658 REMARK 3 8 2.3227 - 2.2216 1.00 2643 139 0.1412 0.1700 REMARK 3 9 2.2216 - 2.1361 1.00 2656 139 0.1460 0.1829 REMARK 3 10 2.1361 - 2.0624 1.00 2652 140 0.1502 0.1732 REMARK 3 11 2.0624 - 1.9979 1.00 2591 136 0.1557 0.1852 REMARK 3 12 1.9979 - 1.9408 1.00 2648 140 0.1484 0.1700 REMARK 3 13 1.9408 - 1.8897 1.00 2623 138 0.1513 0.1792 REMARK 3 14 1.8897 - 1.8436 1.00 2634 138 0.1493 0.1622 REMARK 3 15 1.8436 - 1.8017 1.00 2642 139 0.1529 0.1670 REMARK 3 16 1.8017 - 1.7633 1.00 2618 138 0.1633 0.2167 REMARK 3 17 1.7633 - 1.7281 1.00 2615 138 0.1723 0.1897 REMARK 3 18 1.7281 - 1.6954 1.00 2626 138 0.1685 0.2087 REMARK 3 19 1.6954 - 1.6652 1.00 2611 138 0.1751 0.2008 REMARK 3 20 1.6652 - 1.6369 1.00 2605 137 0.1854 0.2069 REMARK 3 21 1.6369 - 1.6105 1.00 2633 138 0.1929 0.2249 REMARK 3 22 1.6105 - 1.5857 1.00 2604 137 0.2044 0.2170 REMARK 3 23 1.5857 - 1.5624 1.00 2599 137 0.2133 0.2115 REMARK 3 24 1.5624 - 1.5404 1.00 2628 139 0.2253 0.2460 REMARK 3 25 1.5404 - 1.5196 1.00 2606 137 0.2270 0.2530 REMARK 3 26 1.5196 - 1.4999 1.00 2612 137 0.2431 0.2570 REMARK 3 27 1.4999 - 1.4811 1.00 2586 136 0.2653 0.2729 REMARK 3 28 1.4811 - 1.4633 1.00 2626 139 0.2639 0.3077 REMARK 3 29 1.4633 - 1.4463 1.00 2613 137 0.2968 0.2908 REMARK 3 30 1.4463 - 1.4300 0.99 2579 136 0.3201 0.3433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3455 REMARK 3 ANGLE : 1.134 4715 REMARK 3 CHIRALITY : 0.079 494 REMARK 3 PLANARITY : 0.007 603 REMARK 3 DIHEDRAL : 16.007 1309 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9788 30.4547 34.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.2889 REMARK 3 T33: 0.1485 T12: -0.0531 REMARK 3 T13: 0.0225 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.6378 L22: 1.2339 REMARK 3 L33: 2.1404 L12: -1.3051 REMARK 3 L13: 1.1347 L23: -0.4766 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: -0.3798 S13: -0.0301 REMARK 3 S21: 0.0848 S22: 0.1365 S23: 0.2479 REMARK 3 S31: 0.1868 S32: -0.4989 S33: -0.0699 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5793 13.4949 31.2468 REMARK 3 T TENSOR REMARK 3 T11: 0.3065 T22: 0.3086 REMARK 3 T33: 0.2907 T12: 0.1766 REMARK 3 T13: -0.0521 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.3831 L22: 2.9958 REMARK 3 L33: 5.1207 L12: -0.9135 REMARK 3 L13: 0.4448 L23: -0.7503 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.0121 S13: -0.3069 REMARK 3 S21: -0.0995 S22: -0.0834 S23: -0.2921 REMARK 3 S31: 0.7176 S32: 0.4764 S33: 0.0244 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9949 20.3688 26.1871 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.1537 REMARK 3 T33: 0.1406 T12: 0.0668 REMARK 3 T13: -0.0207 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.0528 L22: 1.9426 REMARK 3 L33: 2.8824 L12: -0.5694 REMARK 3 L13: 0.5622 L23: -0.7081 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.0651 S13: -0.2070 REMARK 3 S21: -0.0369 S22: -0.0036 S23: -0.1654 REMARK 3 S31: 0.4550 S32: 0.2969 S33: -0.0586 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2314 34.2552 11.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1138 REMARK 3 T33: 0.0665 T12: -0.0127 REMARK 3 T13: 0.0368 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 2.9883 L22: 2.1330 REMARK 3 L33: 2.3752 L12: -0.2448 REMARK 3 L13: 0.9763 L23: 0.4150 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.1303 S13: 0.0865 REMARK 3 S21: -0.1061 S22: -0.0237 S23: 0.0105 REMARK 3 S31: 0.0725 S32: -0.1153 S33: 0.0017 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7626 23.6483 2.1419 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.2666 REMARK 3 T33: 0.1597 T12: -0.0428 REMARK 3 T13: -0.0074 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 4.4403 L22: 0.9084 REMARK 3 L33: 3.2556 L12: 1.7742 REMARK 3 L13: 0.3622 L23: 0.3655 REMARK 3 S TENSOR REMARK 3 S11: 0.1199 S12: 1.1983 S13: -0.6215 REMARK 3 S21: -0.4267 S22: -0.1521 S23: 0.1324 REMARK 3 S31: 0.4134 S32: -0.1336 S33: 0.0315 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3919 30.1904 17.0713 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.1082 REMARK 3 T33: 0.1132 T12: -0.0185 REMARK 3 T13: -0.0128 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.5991 L22: 1.5436 REMARK 3 L33: 2.9322 L12: -0.0896 REMARK 3 L13: -0.0549 L23: -0.1418 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0303 S13: -0.0449 REMARK 3 S21: -0.1004 S22: 0.0522 S23: 0.0848 REMARK 3 S31: 0.2131 S32: -0.1836 S33: -0.0519 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4349 29.4592 16.6644 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.3595 REMARK 3 T33: 0.2411 T12: -0.0848 REMARK 3 T13: -0.0289 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 4.4567 L22: 6.6551 REMARK 3 L33: 2.9157 L12: -3.4658 REMARK 3 L13: 0.4356 L23: 0.4093 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.4077 S13: -0.3407 REMARK 3 S21: -0.3127 S22: 0.0128 S23: 0.8761 REMARK 3 S31: 0.3222 S32: -0.7097 S33: -0.0584 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5046 41.1922 25.5212 REMARK 3 T TENSOR REMARK 3 T11: 0.1521 T22: 0.1715 REMARK 3 T33: 0.1893 T12: 0.0200 REMARK 3 T13: 0.0430 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.0994 L22: 3.6497 REMARK 3 L33: 9.1390 L12: -2.5012 REMARK 3 L13: 8.5523 L23: -1.9794 REMARK 3 S TENSOR REMARK 3 S11: -0.3126 S12: -0.4042 S13: 0.5689 REMARK 3 S21: 0.2817 S22: 0.1756 S23: 0.1436 REMARK 3 S31: -0.4516 S32: -0.3701 S33: 0.1338 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5408 23.3563 34.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.2891 REMARK 3 T33: 0.2083 T12: 0.0649 REMARK 3 T13: -0.0581 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 4.1409 L22: 4.3122 REMARK 3 L33: 2.0593 L12: -2.6285 REMARK 3 L13: 0.8235 L23: -0.9739 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: -0.3071 S13: 0.0801 REMARK 3 S21: 0.3351 S22: 0.0534 S23: -0.5538 REMARK 3 S31: 0.1650 S32: 0.5068 S33: 0.0106 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6331 14.1708 10.5767 REMARK 3 T TENSOR REMARK 3 T11: 0.5377 T22: 0.2221 REMARK 3 T33: 0.4357 T12: 0.0744 REMARK 3 T13: 0.1267 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.3664 L22: 2.0018 REMARK 3 L33: 2.4900 L12: -5.4575 REMARK 3 L13: 2.8461 L23: -5.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.1740 S12: -0.0768 S13: -1.2126 REMARK 3 S21: 0.1015 S22: -0.0102 S23: 0.7323 REMARK 3 S31: 1.3760 S32: 0.0465 S33: 0.1918 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0389 17.7195 6.2710 REMARK 3 T TENSOR REMARK 3 T11: 0.3647 T22: 0.2325 REMARK 3 T33: 0.2213 T12: 0.1161 REMARK 3 T13: 0.0555 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.1784 L22: 5.6744 REMARK 3 L33: 1.4931 L12: -1.3073 REMARK 3 L13: 0.4228 L23: 0.2291 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.1259 S13: -0.2974 REMARK 3 S21: -0.1956 S22: -0.0656 S23: -0.2025 REMARK 3 S31: 0.6876 S32: 0.3595 S33: 0.0722 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1941 25.9521 4.3861 REMARK 3 T TENSOR REMARK 3 T11: 0.3407 T22: 0.4313 REMARK 3 T33: 0.5395 T12: 0.0392 REMARK 3 T13: 0.1521 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 9.9011 L22: 5.1704 REMARK 3 L33: 8.3021 L12: -0.7724 REMARK 3 L13: 1.4437 L23: 2.4259 REMARK 3 S TENSOR REMARK 3 S11: 0.2571 S12: -0.1352 S13: 0.7488 REMARK 3 S21: -0.6792 S22: 0.3133 S23: -1.5831 REMARK 3 S31: -0.2744 S32: 1.6775 S33: -0.5156 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000223030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 1.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG5000 MME, 50 MM MES PH 6.5, REMARK 280 10MM CACL2, 250MM NACL, 5% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.83000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 30 N CB OG REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 379 O HOH A 503 1.52 REMARK 500 O GLY B 30 H ILE B 40 1.59 REMARK 500 O HOH B 233 O HOH B 234 2.04 REMARK 500 O HOH A 524 O HOH A 849 2.05 REMARK 500 O HOH A 803 O HOH A 810 2.06 REMARK 500 O HOH A 518 O HOH A 586 2.07 REMARK 500 O HOH A 770 O HOH A 890 2.09 REMARK 500 O HOH A 923 O HOH A 929 2.09 REMARK 500 O HOH A 681 O HOH A 820 2.10 REMARK 500 O HOH A 729 O HOH A 888 2.14 REMARK 500 O HOH B 209 O HOH B 211 2.17 REMARK 500 O HOH A 505 O HOH A 884 2.17 REMARK 500 O HOH A 921 O HOH B 227 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 385 C - N - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 183 68.77 37.47 REMARK 500 LYS A 243 -47.32 -130.42 REMARK 500 ALA A 275 -143.18 -131.94 REMARK 500 ASP A 295 22.56 -143.06 REMARK 500 TRP A 308 -23.10 75.01 REMARK 500 SER B 22 -150.59 -154.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 52 O REMARK 620 2 HOH A 514 O 154.1 REMARK 620 3 HOH A 567 O 121.9 83.3 REMARK 620 4 HOH A 610 O 87.9 98.3 90.3 REMARK 620 5 HOH A 681 O 81.7 99.4 79.3 158.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 333 OD1 REMARK 620 2 HOH A 522 O 92.9 REMARK 620 3 HOH A 543 O 80.1 81.0 REMARK 620 4 HOH A 765 O 118.6 116.9 151.2 REMARK 620 5 HOH A 831 O 93.4 159.1 80.6 76.9 REMARK 620 6 HOH A 833 O 81.1 75.9 149.3 59.4 124.8 REMARK 620 7 HOH A 855 O 161.4 81.0 81.5 79.5 86.8 114.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 100 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 1 OD2 REMARK 620 2 ILE B 2 O 68.6 REMARK 620 3 GLU B 4 OE1 141.6 73.0 REMARK 620 4 ASN B 18 OD1 85.1 82.8 90.4 REMARK 620 5 THR B 19 O 73.9 142.0 144.3 88.9 REMARK 620 6 SER B 22 O 145.7 141.8 71.1 84.7 73.3 REMARK 620 7 HOH B 203 O 90.1 80.5 83.4 163.3 105.1 107.8 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L0R RELATED DB: PDB REMARK 900 RELATED ID: 5L0S RELATED DB: PDB REMARK 900 RELATED ID: 5L0U RELATED DB: PDB REMARK 900 RELATED ID: 5L0V RELATED DB: PDB DBREF 5L0T A 29 385 UNP Q8NBL1 PGLT1_HUMAN 29 385 DBREF 5L0T B -1 40 PDB 5L0T 5L0T -1 40 SEQRES 1 A 357 GLY SER LYS TRP LYS VAL PHE ILE ASP GLN ILE ASN ARG SEQRES 2 A 357 SER LEU GLU ASN TYR GLU PRO CYS SER SER GLN ASN CYS SEQRES 3 A 357 SER CYS TYR HIS GLY VAL ILE GLU GLU ASP LEU THR PRO SEQRES 4 A 357 PHE ARG GLY GLY ILE SER ARG LYS MET MET ALA GLU VAL SEQRES 5 A 357 VAL ARG ARG LYS LEU GLY THR HIS TYR GLN ILE THR LYS SEQRES 6 A 357 ASN ARG LEU TYR ARG GLU ASN ASP CYS MET PHE PRO SER SEQRES 7 A 357 ARG CYS SER GLY VAL GLU HIS PHE ILE LEU GLU VAL ILE SEQRES 8 A 357 GLY ARG LEU PRO ASP MET GLU MET VAL ILE ASN VAL ARG SEQRES 9 A 357 ASP TYR PRO GLN VAL PRO LYS TRP MET GLU PRO ALA ILE SEQRES 10 A 357 PRO VAL PHE SER PHE SER LYS THR SER GLU TYR HIS ASP SEQRES 11 A 357 ILE MET TYR PRO ALA TRP THR PHE TRP GLU GLY GLY PRO SEQRES 12 A 357 ALA VAL TRP PRO ILE TYR PRO THR GLY LEU GLY ARG TRP SEQRES 13 A 357 ASP LEU PHE ARG GLU ASP LEU VAL ARG SER ALA ALA GLN SEQRES 14 A 357 TRP PRO TRP LYS LYS LYS ASN SER THR ALA TYR PHE ARG SEQRES 15 A 357 GLY SER ARG THR SER PRO GLU ARG ASP PRO LEU ILE LEU SEQRES 16 A 357 LEU SER ARG LYS ASN PRO LYS LEU VAL ASP ALA GLU TYR SEQRES 17 A 357 THR LYS ASN GLN ALA TRP LYS SER MET LYS ASP THR LEU SEQRES 18 A 357 GLY LYS PRO ALA ALA LYS ASP VAL HIS LEU VAL ASP HIS SEQRES 19 A 357 CYS LYS TYR LYS TYR LEU PHE ASN PHE ARG GLY VAL ALA SEQRES 20 A 357 ALA SER PHE ARG PHE LYS HIS LEU PHE LEU CYS GLY SER SEQRES 21 A 357 LEU VAL PHE HIS VAL GLY ASP GLU TRP LEU GLU PHE PHE SEQRES 22 A 357 TYR PRO GLN LEU LYS PRO TRP VAL HIS TYR ILE PRO VAL SEQRES 23 A 357 LYS THR ASP LEU SER ASN VAL GLN GLU LEU LEU GLN PHE SEQRES 24 A 357 VAL LYS ALA ASN ASP ASP VAL ALA GLN GLU ILE ALA GLU SEQRES 25 A 357 ARG GLY SER GLN PHE ILE ARG ASN HIS LEU GLN MET ASP SEQRES 26 A 357 ASP ILE THR CYS TYR TRP GLU ASN LEU LEU SER GLU TYR SEQRES 27 A 357 SER LYS PHE LEU SER TYR ASN VAL THR ARG ARG LYS GLY SEQRES 28 A 357 TYR ASP GLN ILE ILE PRO SEQRES 1 B 42 GLY SER ASP ILE ASP GLU CYS ALA SER ASN PRO CYS GLN SEQRES 2 B 42 ASN GLY GLY THR CYS VAL ASN THR VAL GLY SER TYR THR SEQRES 3 B 42 CYS LEU CYS PRO PRO GLY PHE THR GLY PRO ASN CYS GLU SEQRES 4 B 42 ASP ASP ILE HET NAG A 401 28 HET NAG A 402 28 HET NAG A 403 28 HET UDP A 404 25 HET CA A 405 1 HET CA A 406 1 HET CL A 407 1 HET GOL A 408 6 HET CA B 100 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 UDP C9 H14 N2 O12 P2 FORMUL 7 CA 3(CA 2+) FORMUL 9 CL CL 1- FORMUL 10 GOL C3 H8 O3 FORMUL 12 HOH *482(H2 O) HELIX 1 AA1 TRP A 32 TYR A 46 1 15 HELIX 2 AA2 ASN A 53 CYS A 56 5 4 HELIX 3 AA3 TYR A 57 THR A 66 1 10 HELIX 4 AA4 PRO A 67 ARG A 69 5 3 HELIX 5 AA5 SER A 73 ARG A 83 1 11 HELIX 6 AA6 PHE A 104 ILE A 119 1 16 HELIX 7 AA7 GLY A 120 LEU A 122 5 3 HELIX 8 AA8 ALA A 163 TRP A 167 5 5 HELIX 9 AA9 ARG A 183 TRP A 198 1 16 HELIX 10 AB1 PRO A 199 LYS A 203 5 5 HELIX 11 AB2 SER A 215 GLU A 217 5 3 HELIX 12 AB3 ARG A 218 ASN A 228 1 11 HELIX 13 AB4 SER A 244 LEU A 249 5 6 HELIX 14 AB5 HIS A 258 CYS A 263 5 6 HELIX 15 AB6 PHE A 278 CYS A 286 1 9 HELIX 16 AB7 PHE A 301 LEU A 305 5 5 HELIX 17 AB8 ASN A 320 ASN A 331 1 12 HELIX 18 AB9 ASN A 331 LEU A 350 1 20 HELIX 19 AC1 GLN A 351 LYS A 368 1 18 HELIX 20 AC2 ASP B 3 ASN B 8 5 6 SHEET 1 AA1 4 MET A 125 ILE A 129 0 SHEET 2 AA1 4 THR A 87 THR A 92 -1 N ILE A 91 O MET A 125 SHEET 3 AA1 4 ARG A 95 ARG A 98 -1 O TYR A 97 N GLN A 90 SHEET 4 AA1 4 ASP A 381 ILE A 383 -1 O ILE A 383 N LEU A 96 SHEET 1 AA2 2 PHE A 148 SER A 149 0 SHEET 2 AA2 2 ILE A 159 MET A 160 1 O ILE A 159 N SER A 149 SHEET 1 AA3 2 ALA A 207 GLY A 211 0 SHEET 2 AA3 2 VAL A 232 TYR A 236 1 O ASP A 233 N ALA A 207 SHEET 1 AA4 3 TYR A 267 ASN A 270 0 SHEET 2 AA4 3 LEU A 289 VAL A 293 1 O PHE A 291 N LEU A 268 SHEET 3 AA4 3 ILE A 312 VAL A 314 1 O ILE A 312 N VAL A 290 SHEET 1 AA5 2 THR B 15 ASN B 18 0 SHEET 2 AA5 2 TYR B 23 LEU B 26 -1 O THR B 24 N VAL B 17 SHEET 1 AA6 2 PHE B 31 THR B 32 0 SHEET 2 AA6 2 ASP B 38 ASP B 39 -1 O ASP B 38 N THR B 32 SSBOND 1 CYS A 49 CYS A 56 1555 1555 2.03 SSBOND 2 CYS A 54 CYS A 357 1555 1555 2.12 SSBOND 3 CYS A 102 CYS A 108 1555 1555 2.08 SSBOND 4 CYS A 263 CYS A 286 1555 1555 2.13 SSBOND 5 CYS B 5 CYS B 16 1555 1555 2.07 SSBOND 6 CYS B 10 CYS B 25 1555 1555 2.04 SSBOND 7 CYS B 27 CYS B 36 1555 1555 2.08 LINK ND2 ASN A 53 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 204 C1 NAG A 402 1555 1555 1.42 LINK ND2 ASN A 373 C1 NAG A 403 1555 1555 1.42 LINK O GLN A 52 CA CA A 405 1555 1555 2.49 LINK OD1 ASP A 333 CA CA A 406 1555 1555 2.31 LINK CA CA A 405 O HOH A 514 1555 1555 2.22 LINK CA CA A 405 O HOH A 567 1555 1555 2.39 LINK CA CA A 405 O HOH A 610 1555 1555 2.23 LINK CA CA A 405 O HOH A 681 1555 1555 2.33 LINK CA CA A 406 O HOH A 522 1555 1555 2.45 LINK CA CA A 406 O HOH A 543 1555 1555 2.36 LINK CA CA A 406 O HOH A 765 1555 3555 2.40 LINK CA CA A 406 O HOH A 831 1555 3555 2.42 LINK CA CA A 406 O HOH A 833 1555 1555 2.49 LINK CA CA A 406 O HOH A 855 1555 3555 2.40 LINK OD2 ASP B 1 CA CA B 100 1555 1555 2.53 LINK O ILE B 2 CA CA B 100 1555 1555 2.46 LINK OE1 GLU B 4 CA CA B 100 1555 1555 2.39 LINK OD1 ASN B 18 CA CA B 100 1555 1555 2.27 LINK O THR B 19 CA CA B 100 1555 1555 2.38 LINK O SER B 22 CA CA B 100 1555 1555 2.48 LINK CA CA B 100 O HOH B 203 1555 1555 2.27 CISPEP 1 GLU A 142 PRO A 143 0 0.85 CISPEP 2 TRP A 174 PRO A 175 0 4.27 CISPEP 3 ILE A 384 PRO A 385 0 2.44 CRYST1 71.660 75.200 82.950 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013955 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012055 0.00000