PDB Short entry for 5L4Q HEADER TRANSFERASE 26-MAY-16 5L4Q TITLE CRYSTAL STRUCTURE OF ADAPTOR PROTEIN 2 ASSOCIATED KINASE 1 (AAK1) IN TITLE 2 COMPLEX WITH LKB1 (AAK1 DUAL INHIBITOR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP2-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADAPTOR-ASSOCIATED KINASE 1; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AAK1, KIAA1048; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASE KINASE DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.SORRELL,E.WILLIAMS,N.FOX,K.R.ABDUL AZEEZ,O.GILEADI,F.VON DELFT, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.M.ELKINS,S.KNAPP REVDAT 3 10-JAN-24 5L4Q 1 REMARK REVDAT 2 03-JUL-19 5L4Q 1 JRNL REVDAT 1 08-JUN-16 5L4Q 0 JRNL AUTH S.VERDONCK,S.Y.PU,F.J.SORRELL,J.M.ELKINS,M.FROEYEN,L.J.GAO, JRNL AUTH 2 L.I.PRUGAR,D.E.DOROSKY,J.M.BRANNAN,R.BAROUCH-BENTOV,S.KNAPP, JRNL AUTH 3 J.M.DYE,P.HERDEWIJN,S.EINAV,S.DE JONGHE JRNL TITL SYNTHESIS AND STRUCTURE-ACTIVITY RELATIONSHIPS OF JRNL TITL 2 3,5-DISUBSTITUTED-PYRROLO[2,3- B]PYRIDINES AS INHIBITORS OF JRNL TITL 3 ADAPTOR-ASSOCIATED KINASE 1 WITH ANTIVIRAL ACTIVITY. JRNL REF J.MED.CHEM. 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31136173 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00136 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 39628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.7464 - 3.7679 0.97 2670 136 0.1576 0.1810 REMARK 3 2 3.7679 - 3.2918 0.98 2662 148 0.1814 0.1988 REMARK 3 3 3.2918 - 2.9908 0.99 2708 131 0.1961 0.1925 REMARK 3 4 2.9908 - 2.7765 0.99 2700 147 0.2169 0.2550 REMARK 3 5 2.7765 - 2.6128 0.99 2714 130 0.2070 0.2183 REMARK 3 6 2.6128 - 2.4820 1.00 2715 134 0.2220 0.2247 REMARK 3 7 2.4820 - 2.3739 0.99 2651 150 0.2396 0.2348 REMARK 3 8 2.3739 - 2.2826 0.99 2695 138 0.2455 0.3146 REMARK 3 9 2.2826 - 2.2038 0.98 2665 126 0.2633 0.2900 REMARK 3 10 2.2038 - 2.1349 0.99 2689 147 0.2666 0.3079 REMARK 3 11 2.1349 - 2.0739 0.99 2693 116 0.2880 0.2780 REMARK 3 12 2.0739 - 2.0193 0.99 2680 146 0.3022 0.3142 REMARK 3 13 2.0193 - 1.9700 0.99 2666 141 0.3281 0.3759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4727 REMARK 3 ANGLE : 0.742 6406 REMARK 3 CHIRALITY : 0.031 718 REMARK 3 PLANARITY : 0.003 877 REMARK 3 DIHEDRAL : 11.653 1766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 34:132) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9858 -6.9087 -29.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.3214 T22: 0.2546 REMARK 3 T33: 0.3162 T12: -0.0157 REMARK 3 T13: -0.0325 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.7401 L22: 2.5099 REMARK 3 L33: 2.2755 L12: -0.8379 REMARK 3 L13: 0.4620 L23: -0.7089 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.0887 S13: -0.0294 REMARK 3 S21: -0.0942 S22: 0.0557 S23: 0.3261 REMARK 3 S31: -0.0625 S32: -0.2118 S33: -0.0522 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 133:258) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6355 -5.4667 -41.1599 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.2478 REMARK 3 T33: 0.2979 T12: -0.0038 REMARK 3 T13: -0.0335 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.1414 L22: 1.8346 REMARK 3 L33: 2.1196 L12: -0.1653 REMARK 3 L13: -0.3125 L23: -0.2333 REMARK 3 S TENSOR REMARK 3 S11: 0.0915 S12: -0.0839 S13: 0.0795 REMARK 3 S21: 0.0053 S22: -0.0843 S23: -0.0499 REMARK 3 S31: -0.1359 S32: 0.0378 S33: 0.0072 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 259:280) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2804 5.0860 -45.0378 REMARK 3 T TENSOR REMARK 3 T11: 0.8829 T22: 0.6363 REMARK 3 T33: 1.0060 T12: -0.1325 REMARK 3 T13: -0.0741 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.0838 L22: 1.6095 REMARK 3 L33: 1.8562 L12: -0.3306 REMARK 3 L13: -1.4148 L23: 0.5411 REMARK 3 S TENSOR REMARK 3 S11: -0.2785 S12: 0.1798 S13: -0.1792 REMARK 3 S21: -0.2589 S22: 0.1893 S23: -0.5738 REMARK 3 S31: 0.1895 S32: 0.2106 S33: 0.0411 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 281:333) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9413 -12.3134 -43.2459 REMARK 3 T TENSOR REMARK 3 T11: 0.3298 T22: 0.3378 REMARK 3 T33: 0.4707 T12: 0.0036 REMARK 3 T13: -0.0442 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 2.5328 L22: 1.5689 REMARK 3 L33: 2.0016 L12: -0.0560 REMARK 3 L13: 0.6484 L23: -0.2224 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.0470 S13: -0.3187 REMARK 3 S21: 0.0714 S22: -0.1585 S23: -0.5652 REMARK 3 S31: -0.0663 S32: 0.3610 S33: 0.0948 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 33:132) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1725 -20.1723 -8.0628 REMARK 3 T TENSOR REMARK 3 T11: 0.4586 T22: 0.2815 REMARK 3 T33: 0.3682 T12: 0.0094 REMARK 3 T13: -0.1196 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 3.0343 L22: 1.7789 REMARK 3 L33: 1.9496 L12: 0.2765 REMARK 3 L13: -0.1979 L23: -0.2152 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: 0.0833 S13: 0.2597 REMARK 3 S21: 0.3001 S22: 0.0791 S23: 0.0819 REMARK 3 S31: -0.1268 S32: -0.0618 S33: 0.0265 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 133:257) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3263 -21.9793 -4.3644 REMARK 3 T TENSOR REMARK 3 T11: 0.4139 T22: 0.2601 REMARK 3 T33: 0.3245 T12: -0.0196 REMARK 3 T13: -0.0864 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.9291 L22: 2.2314 REMARK 3 L33: 1.8702 L12: 0.3599 REMARK 3 L13: -0.6048 L23: 0.7927 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -0.0107 S13: -0.1061 REMARK 3 S21: 0.0323 S22: 0.0974 S23: -0.1028 REMARK 3 S31: 0.3689 S32: -0.0624 S33: -0.0227 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 258:279) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0314 -33.3474 -7.5275 REMARK 3 T TENSOR REMARK 3 T11: 1.1028 T22: 0.4824 REMARK 3 T33: 0.6188 T12: 0.1087 REMARK 3 T13: 0.1371 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 5.5835 L22: 1.8148 REMARK 3 L33: 1.0142 L12: 0.2506 REMARK 3 L13: 1.4385 L23: -0.3131 REMARK 3 S TENSOR REMARK 3 S11: 0.1667 S12: -0.2907 S13: -0.2868 REMARK 3 S21: -0.1183 S22: -0.1453 S23: -0.1577 REMARK 3 S31: 0.8275 S32: 0.4570 S33: 0.1494 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 280:333) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5177 -15.6463 -8.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.3594 T22: 0.3311 REMARK 3 T33: 0.4150 T12: -0.0129 REMARK 3 T13: -0.0361 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.2066 L22: 1.9146 REMARK 3 L33: 2.4270 L12: -0.1860 REMARK 3 L13: -0.4331 L23: -0.1974 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.0793 S13: 0.0191 REMARK 3 S21: -0.0639 S22: 0.0700 S23: -0.3918 REMARK 3 S31: -0.0312 S32: 0.3679 S33: -0.0970 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3380 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1200000128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 46.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 4WSQ REMARK 200 REMARK 200 REMARK: THICK RECTANGULAR PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.5, 26% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.52500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 GLY A 31 REMARK 465 SER A 32 REMARK 465 GLY A 263 REMARK 465 GLU A 264 REMARK 465 SER A 265 REMARK 465 GLN A 266 REMARK 465 VAL A 267 REMARK 465 ALA A 268 REMARK 465 ILE A 269 REMARK 465 CYS A 270 REMARK 465 ASP A 271 REMARK 465 GLY A 272 REMARK 465 PRO A 336 REMARK 465 VAL A 337 REMARK 465 LYS A 338 REMARK 465 ALA A 339 REMARK 465 SER A 340 REMARK 465 GLU A 341 REMARK 465 ALA A 342 REMARK 465 ALA A 343 REMARK 465 ALA A 344 REMARK 465 LYS A 345 REMARK 465 LYS A 346 REMARK 465 THR A 347 REMARK 465 GLN A 348 REMARK 465 PRO A 349 REMARK 465 LYS A 350 REMARK 465 ALA A 351 REMARK 465 ARG A 352 REMARK 465 LEU A 353 REMARK 465 THR A 354 REMARK 465 ASP A 355 REMARK 465 PRO A 356 REMARK 465 ILE A 357 REMARK 465 PRO A 358 REMARK 465 THR A 359 REMARK 465 THR A 360 REMARK 465 GLU A 361 REMARK 465 THR A 362 REMARK 465 SER A 363 REMARK 465 ILE A 364 REMARK 465 ALA A 365 REMARK 465 ALA A 366 REMARK 465 GLU A 367 REMARK 465 ASN A 368 REMARK 465 LEU A 369 REMARK 465 TYR A 370 REMARK 465 PHE A 371 REMARK 465 GLN A 372 REMARK 465 THR B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 SER B 32 REMARK 465 SER B 115 REMARK 465 SER B 116 REMARK 465 GLY B 117 REMARK 465 ASP B 118 REMARK 465 GLY B 263 REMARK 465 GLU B 264 REMARK 465 SER B 265 REMARK 465 GLN B 266 REMARK 465 VAL B 267 REMARK 465 ALA B 268 REMARK 465 ILE B 269 REMARK 465 CYS B 270 REMARK 465 ASP B 271 REMARK 465 GLY B 272 REMARK 465 PRO B 334 REMARK 465 GLU B 335 REMARK 465 PRO B 336 REMARK 465 VAL B 337 REMARK 465 LYS B 338 REMARK 465 ALA B 339 REMARK 465 SER B 340 REMARK 465 GLU B 341 REMARK 465 ALA B 342 REMARK 465 ALA B 343 REMARK 465 ALA B 344 REMARK 465 LYS B 345 REMARK 465 LYS B 346 REMARK 465 THR B 347 REMARK 465 GLN B 348 REMARK 465 PRO B 349 REMARK 465 LYS B 350 REMARK 465 ALA B 351 REMARK 465 ARG B 352 REMARK 465 LEU B 353 REMARK 465 THR B 354 REMARK 465 ASP B 355 REMARK 465 PRO B 356 REMARK 465 ILE B 357 REMARK 465 PRO B 358 REMARK 465 THR B 359 REMARK 465 THR B 360 REMARK 465 GLU B 361 REMARK 465 THR B 362 REMARK 465 SER B 363 REMARK 465 ILE B 364 REMARK 465 ALA B 365 REMARK 465 ALA B 366 REMARK 465 GLU B 367 REMARK 465 ASN B 368 REMARK 465 LEU B 369 REMARK 465 TYR B 370 REMARK 465 PHE B 371 REMARK 465 GLN B 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 70 CE NZ REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 ARG A 130 CZ NH1 NH2 REMARK 470 GLN A 143 CD OE1 NE2 REMARK 470 ASN A 273 CG OD1 ND2 REMARK 470 THR A 275 OG1 CG2 REMARK 470 ASP A 278 CG OD1 OD2 REMARK 470 ASN A 279 CG OD1 ND2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 284 CD OE1 NE2 REMARK 470 LYS A 300 CD CE NZ REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 SER B 98 OG REMARK 470 ASN B 113 CG OD1 ND2 REMARK 470 ARG B 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 GLU B 208 CD OE1 OE2 REMARK 470 LEU B 260 CG CD1 CD2 REMARK 470 ASN B 279 CG OD1 ND2 REMARK 470 GLN B 284 CG CD OE1 NE2 REMARK 470 LYS B 300 CE NZ REMARK 470 GLU B 318 CG CD OE1 OE2 REMARK 470 LYS B 332 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 509 O HOH A 605 1.84 REMARK 500 O HOH A 609 O HOH A 610 1.92 REMARK 500 O HOH A 565 O HOH A 593 2.03 REMARK 500 O HOH A 531 O HOH A 567 2.06 REMARK 500 O PHE A 274 O HOH A 501 2.11 REMARK 500 O HOH B 573 O HOH B 600 2.15 REMARK 500 O HOH A 566 O HOH A 605 2.15 REMARK 500 O VAL B 324 O HOH B 501 2.16 REMARK 500 O HOH B 534 O HOH B 585 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 176 47.50 -147.40 REMARK 500 ASP A 194 92.35 63.93 REMARK 500 THR A 240 -165.64 -120.49 REMARK 500 PHE A 258 14.82 59.20 REMARK 500 SER A 280 80.98 48.05 REMARK 500 ASP B 176 47.81 -147.18 REMARK 500 ASP B 194 92.67 64.06 REMARK 500 THR B 240 -165.33 -121.28 REMARK 500 PHE B 258 16.40 58.99 REMARK 500 ASN B 279 43.47 -76.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LKB A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LKB B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 DBREF 5L4Q A 27 365 UNP Q2M2I8 AAK1_HUMAN 27 365 DBREF 5L4Q B 27 365 UNP Q2M2I8 AAK1_HUMAN 27 365 SEQADV 5L4Q ALA A 366 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q GLU A 367 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q ASN A 368 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q LEU A 369 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q TYR A 370 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q PHE A 371 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q GLN A 372 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q ALA B 366 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q GLU B 367 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q ASN B 368 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q LEU B 369 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q TYR B 370 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q PHE B 371 UNP Q2M2I8 EXPRESSION TAG SEQADV 5L4Q GLN B 372 UNP Q2M2I8 EXPRESSION TAG SEQRES 1 A 346 THR SER GLY LEU GLY SER GLY TYR ILE GLY ARG VAL PHE SEQRES 2 A 346 GLY ILE GLY ARG GLN GLN VAL THR VAL ASP GLU VAL LEU SEQRES 3 A 346 ALA GLU GLY GLY PHE ALA ILE VAL PHE LEU VAL ARG THR SEQRES 4 A 346 SER ASN GLY MET LYS CYS ALA LEU LYS ARG MET PHE VAL SEQRES 5 A 346 ASN ASN GLU HIS ASP LEU GLN VAL CYS LYS ARG GLU ILE SEQRES 6 A 346 GLN ILE MET ARG ASP LEU SER GLY HIS LYS ASN ILE VAL SEQRES 7 A 346 GLY TYR ILE ASP SER SER ILE ASN ASN VAL SER SER GLY SEQRES 8 A 346 ASP VAL TRP GLU VAL LEU ILE LEU MET ASP PHE CYS ARG SEQRES 9 A 346 GLY GLY GLN VAL VAL ASN LEU MET ASN GLN ARG LEU GLN SEQRES 10 A 346 THR GLY PHE THR GLU ASN GLU VAL LEU GLN ILE PHE CYS SEQRES 11 A 346 ASP THR CYS GLU ALA VAL ALA ARG LEU HIS GLN CYS LYS SEQRES 12 A 346 THR PRO ILE ILE HIS ARG ASP LEU LYS VAL GLU ASN ILE SEQRES 13 A 346 LEU LEU HIS ASP ARG GLY HIS TYR VAL LEU CYS ASP PHE SEQRES 14 A 346 GLY SER ALA THR ASN LYS PHE GLN ASN PRO GLN THR GLU SEQRES 15 A 346 GLY VAL ASN ALA VAL GLU ASP GLU ILE LYS LYS TYR THR SEQRES 16 A 346 THR LEU SER TYR ARG ALA PRO GLU MET VAL ASN LEU TYR SEQRES 17 A 346 SER GLY LYS ILE ILE THR THR LYS ALA ASP ILE TRP ALA SEQRES 18 A 346 LEU GLY CYS LEU LEU TYR LYS LEU CYS TYR PHE THR LEU SEQRES 19 A 346 PRO PHE GLY GLU SER GLN VAL ALA ILE CYS ASP GLY ASN SEQRES 20 A 346 PHE THR ILE PRO ASP ASN SER ARG TYR SER GLN ASP MET SEQRES 21 A 346 HIS CYS LEU ILE ARG TYR MET LEU GLU PRO ASP PRO ASP SEQRES 22 A 346 LYS ARG PRO ASP ILE TYR GLN VAL SER TYR PHE SER PHE SEQRES 23 A 346 LYS LEU LEU LYS LYS GLU CYS PRO ILE PRO ASN VAL GLN SEQRES 24 A 346 ASN SER PRO ILE PRO ALA LYS LEU PRO GLU PRO VAL LYS SEQRES 25 A 346 ALA SER GLU ALA ALA ALA LYS LYS THR GLN PRO LYS ALA SEQRES 26 A 346 ARG LEU THR ASP PRO ILE PRO THR THR GLU THR SER ILE SEQRES 27 A 346 ALA ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 346 THR SER GLY LEU GLY SER GLY TYR ILE GLY ARG VAL PHE SEQRES 2 B 346 GLY ILE GLY ARG GLN GLN VAL THR VAL ASP GLU VAL LEU SEQRES 3 B 346 ALA GLU GLY GLY PHE ALA ILE VAL PHE LEU VAL ARG THR SEQRES 4 B 346 SER ASN GLY MET LYS CYS ALA LEU LYS ARG MET PHE VAL SEQRES 5 B 346 ASN ASN GLU HIS ASP LEU GLN VAL CYS LYS ARG GLU ILE SEQRES 6 B 346 GLN ILE MET ARG ASP LEU SER GLY HIS LYS ASN ILE VAL SEQRES 7 B 346 GLY TYR ILE ASP SER SER ILE ASN ASN VAL SER SER GLY SEQRES 8 B 346 ASP VAL TRP GLU VAL LEU ILE LEU MET ASP PHE CYS ARG SEQRES 9 B 346 GLY GLY GLN VAL VAL ASN LEU MET ASN GLN ARG LEU GLN SEQRES 10 B 346 THR GLY PHE THR GLU ASN GLU VAL LEU GLN ILE PHE CYS SEQRES 11 B 346 ASP THR CYS GLU ALA VAL ALA ARG LEU HIS GLN CYS LYS SEQRES 12 B 346 THR PRO ILE ILE HIS ARG ASP LEU LYS VAL GLU ASN ILE SEQRES 13 B 346 LEU LEU HIS ASP ARG GLY HIS TYR VAL LEU CYS ASP PHE SEQRES 14 B 346 GLY SER ALA THR ASN LYS PHE GLN ASN PRO GLN THR GLU SEQRES 15 B 346 GLY VAL ASN ALA VAL GLU ASP GLU ILE LYS LYS TYR THR SEQRES 16 B 346 THR LEU SER TYR ARG ALA PRO GLU MET VAL ASN LEU TYR SEQRES 17 B 346 SER GLY LYS ILE ILE THR THR LYS ALA ASP ILE TRP ALA SEQRES 18 B 346 LEU GLY CYS LEU LEU TYR LYS LEU CYS TYR PHE THR LEU SEQRES 19 B 346 PRO PHE GLY GLU SER GLN VAL ALA ILE CYS ASP GLY ASN SEQRES 20 B 346 PHE THR ILE PRO ASP ASN SER ARG TYR SER GLN ASP MET SEQRES 21 B 346 HIS CYS LEU ILE ARG TYR MET LEU GLU PRO ASP PRO ASP SEQRES 22 B 346 LYS ARG PRO ASP ILE TYR GLN VAL SER TYR PHE SER PHE SEQRES 23 B 346 LYS LEU LEU LYS LYS GLU CYS PRO ILE PRO ASN VAL GLN SEQRES 24 B 346 ASN SER PRO ILE PRO ALA LYS LEU PRO GLU PRO VAL LYS SEQRES 25 B 346 ALA SER GLU ALA ALA ALA LYS LYS THR GLN PRO LYS ALA SEQRES 26 B 346 ARG LEU THR ASP PRO ILE PRO THR THR GLU THR SER ILE SEQRES 27 B 346 ALA ALA GLU ASN LEU TYR PHE GLN HET LKB A 401 39 HET EDO A 402 10 HET LKB B 401 39 HET EDO B 402 10 HETNAM LKB ~{N}-[5-(4-CYANOPHENYL)-1~{H}-PYRROLO[2,3-B]PYRIDIN-3- HETNAM 2 LKB YL]PYRIDINE-3-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 LKB 2(C20 H13 N5 O) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 HOH *220(H2 O) HELIX 1 AA1 ASN A 80 SER A 98 1 19 HELIX 2 AA2 GLN A 133 GLN A 140 1 8 HELIX 3 AA3 THR A 147 GLN A 167 1 21 HELIX 4 AA4 LYS A 178 GLU A 180 5 3 HELIX 5 AA5 ASN A 204 GLY A 209 1 6 HELIX 6 AA6 GLY A 209 THR A 221 1 13 HELIX 7 AA7 THR A 222 ARG A 226 5 5 HELIX 8 AA8 ALA A 227 ASN A 232 1 6 HELIX 9 AA9 THR A 241 PHE A 258 1 18 HELIX 10 AB1 SER A 283 LEU A 294 1 12 HELIX 11 AB2 ASP A 303 LYS A 316 1 14 HELIX 12 AB3 ASN B 80 SER B 98 1 19 HELIX 13 AB4 GLN B 133 ASN B 139 1 7 HELIX 14 AB5 GLN B 140 LEU B 142 5 3 HELIX 15 AB6 THR B 147 GLN B 167 1 21 HELIX 16 AB7 LYS B 178 GLU B 180 5 3 HELIX 17 AB8 ASN B 204 GLY B 209 1 6 HELIX 18 AB9 GLY B 209 THR B 221 1 13 HELIX 19 AC1 THR B 222 ARG B 226 5 5 HELIX 20 AC2 ALA B 227 ASN B 232 1 6 HELIX 21 AC3 THR B 241 PHE B 258 1 18 HELIX 22 AC4 SER B 283 LEU B 294 1 12 HELIX 23 AC5 ASP B 303 LYS B 316 1 14 SHEET 1 AA1 6 VAL A 38 ILE A 41 0 SHEET 2 AA1 6 GLN A 44 GLU A 54 -1 O GLN A 44 N ILE A 41 SHEET 3 AA1 6 ILE A 59 THR A 65 -1 O LEU A 62 N GLU A 50 SHEET 4 AA1 6 LYS A 70 VAL A 78 -1 O LEU A 73 N PHE A 61 SHEET 5 AA1 6 TRP A 120 ASP A 127 -1 O MET A 126 N ALA A 72 SHEET 6 AA1 6 TYR A 106 ASN A 113 -1 N ASN A 112 O GLU A 121 SHEET 1 AA2 2 ILE A 182 LEU A 184 0 SHEET 2 AA2 2 TYR A 190 LEU A 192 -1 O VAL A 191 N LEU A 183 SHEET 1 AA3 6 VAL B 38 ILE B 41 0 SHEET 2 AA3 6 GLN B 44 GLU B 54 -1 O VAL B 46 N PHE B 39 SHEET 3 AA3 6 ILE B 59 ARG B 64 -1 O LEU B 62 N GLU B 50 SHEET 4 AA3 6 LYS B 70 VAL B 78 -1 O LEU B 73 N PHE B 61 SHEET 5 AA3 6 TRP B 120 ASP B 127 -1 O TRP B 120 N VAL B 78 SHEET 6 AA3 6 TYR B 106 ASN B 112 -1 N ASN B 112 O GLU B 121 SHEET 1 AA4 2 ILE B 182 LEU B 184 0 SHEET 2 AA4 2 TYR B 190 LEU B 192 -1 O VAL B 191 N LEU B 183 SITE 1 AC1 13 ALA A 72 LYS A 74 MET A 126 ASP A 127 SITE 2 AC1 13 PHE A 128 CYS A 129 GLN A 133 ASN A 136 SITE 3 AC1 13 LEU A 183 CYS A 193 ASP A 194 HOH A 529 SITE 4 AC1 13 HOH A 565 SITE 1 AC2 4 VAL A 86 LYS A 219 TYR A 220 HOH A 546 SITE 1 AC3 12 ALA B 72 LYS B 74 MET B 126 ASP B 127 SITE 2 AC3 12 PHE B 128 CYS B 129 GLY B 132 GLN B 133 SITE 3 AC3 12 ASN B 136 LEU B 183 ASP B 194 HOH B 514 SITE 1 AC4 4 PHE B 57 LYS B 219 TYR B 220 HOH B 550 CRYST1 61.800 55.050 86.570 90.00 104.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016181 0.000000 0.004167 0.00000 SCALE2 0.000000 0.018165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011928 0.00000