PDB Short entry for 5L6W HEADER TRANSFERASE 31-MAY-16 5L6W TITLE STRUCTURE OF THE LIMK1-ATPGAMMAS-CFL1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN KINASE 1; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: LIMK-1; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COFILIN-1; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: 18 KDA PHOSPHOPROTEIN,P18,COFILIN,NON-MUSCLE ISOFORM; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIMK1, LIMK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: CFL1, CFL; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SALAH,S.MATHEA,S.OERUM,J.A.NEWMAN,C.TALLANT,R.ADAMSON,P.CANNING, AUTHOR 2 A.BELTRAMI,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP, AUTHOR 3 A.N.BULLOCK REVDAT 3 10-JAN-24 5L6W 1 REMARK REVDAT 2 16-OCT-19 5L6W 1 REMARK REVDAT 1 08-JUN-16 5L6W 0 JRNL AUTH E.SALAH,A.N.BULLOCK JRNL TITL STRUCTURE OF THE LIMK1-ATPGAMMAS-CFL1 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1489 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.4260 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.19000 REMARK 3 B22 (A**2) : 3.19000 REMARK 3 B33 (A**2) : -10.34000 REMARK 3 B12 (A**2) : 1.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.737 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3476 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3132 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4735 ; 1.846 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7170 ; 1.076 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 7.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;36.254 ;24.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;18.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.569 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4005 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 764 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1818 ; 7.576 ; 9.424 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1816 ; 7.567 ; 9.421 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2266 ;10.571 ;14.121 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2267 ;10.569 ;14.124 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1658 ; 8.393 ; 9.508 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1658 ; 8.384 ; 9.509 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2470 ;11.168 ;14.148 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3938 ;13.435 ;74.894 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3938 ;13.444 ;74.887 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5L6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 34.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Q8G, 3S95 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PENTAERYTHRITOL PROPOXYLATE 5/4, REMARK 280 0.1 M HEPES PH 7.5, 0.2 M POTASSIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 158.39333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.19667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.19667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 158.39333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL L 486 REMARK 465 ASP L 487 REMARK 465 GLU L 488 REMARK 465 LYS L 489 REMARK 465 THR L 490 REMARK 465 GLN L 491 REMARK 465 PRO L 492 REMARK 465 GLU L 493 REMARK 465 GLY L 494 REMARK 465 LEU L 495 REMARK 465 ARG L 496 REMARK 465 SER L 497 REMARK 465 LEU L 498 REMARK 465 LYS L 499 REMARK 465 LYS L 500 REMARK 465 PRO L 501 REMARK 465 ARG L 634 REMARK 465 GLY L 635 REMARK 465 GLU L 636 REMARK 465 SER L 637 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 335 CD NE CZ NH1 NH2 REMARK 470 LYS L 347 CG CD CE NZ REMARK 470 CYS L 349 SG REMARK 470 PHE L 350 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS L 355 CE NZ REMARK 470 ARG L 359 CD NE CZ NH1 NH2 REMARK 470 GLU L 360 CG CD OE1 OE2 REMARK 470 ARG L 372 CD NE CZ NH1 NH2 REMARK 470 ASP L 374 OD1 OD2 REMARK 470 GLU L 375 CG CD OE1 OE2 REMARK 470 GLU L 376 CD OE1 OE2 REMARK 470 ARG L 379 CG CD NE CZ NH1 NH2 REMARK 470 THR L 380 OG1 CG2 REMARK 470 LYS L 383 CE NZ REMARK 470 LYS L 386 CE NZ REMARK 470 ARG L 389 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 398 CE NZ REMARK 470 LYS L 407 CG CD CE NZ REMARK 470 LYS L 417 CG CD CE NZ REMARK 470 GLN L 431 CG CD OE1 NE2 REMARK 470 GLU L 470 CD OE1 OE2 REMARK 470 LYS L 472 CE NZ REMARK 470 ARG L 483 CZ NH1 NH2 REMARK 470 ASP L 502 CG OD1 OD2 REMARK 470 ARG L 503 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 504 CE NZ REMARK 470 LYS L 505 CG CD CE NZ REMARK 470 ARG L 506 NE CZ NH1 NH2 REMARK 470 ARG L 524 NE CZ NH1 NH2 REMARK 470 SER L 525 OG REMARK 470 ARG L 555 CZ NH1 NH2 REMARK 470 MET L 557 SD CE REMARK 470 ARG L 564 NE CZ NH1 NH2 REMARK 470 ARG L 585 NE CZ NH1 NH2 REMARK 470 LEU L 589 CG CD1 CD2 REMARK 470 GLU L 592 CD OE1 OE2 REMARK 470 LYS L 593 CG CD CE NZ REMARK 470 LYS L 599 CE NZ REMARK 470 HIS L 614 CG ND1 CD2 CE1 NE2 REMARK 470 ARG L 633 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 5 CG1 CG2 REMARK 470 ILE C 12 CD1 REMARK 470 LYS C 13 CD CE NZ REMARK 470 LYS C 19 CD CE NZ REMARK 470 VAL C 20 CG1 CG2 REMARK 470 LYS C 22 CD CE NZ REMARK 470 SER C 23 OG REMARK 470 GLU C 27 CD OE1 OE2 REMARK 470 LYS C 30 CG CD CE NZ REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 ARG C 32 CZ NH1 NH2 REMARK 470 LEU C 40 CG CD1 CD2 REMARK 470 SER C 41 OG REMARK 470 GLU C 42 CD OE1 OE2 REMARK 470 ASP C 43 OD1 OD2 REMARK 470 LYS C 44 CG CD CE NZ REMARK 470 LYS C 45 CG CD CE NZ REMARK 470 ILE C 47 CG1 CG2 CD1 REMARK 470 ILE C 48 CD1 REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 VAL C 64 CG1 CG2 REMARK 470 ASP C 65 OD1 OD2 REMARK 470 LYS C 73 CE NZ REMARK 470 ASP C 77 CG OD1 OD2 REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 GLU C 93 CD OE1 OE2 REMARK 470 LYS C 95 CE NZ REMARK 470 LYS C 96 CG CD CE NZ REMARK 470 GLU C 107 CD OE1 OE2 REMARK 470 LEU C 111 CD1 CD2 REMARK 470 SER C 113 OG REMARK 470 ILE C 116 CD1 REMARK 470 SER C 119 OG REMARK 470 LYS C 121 CE NZ REMARK 470 LYS C 125 CE NZ REMARK 470 LYS C 126 CG CD CE NZ REMARK 470 ILE C 131 CD1 REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 LEU C 135 CG CD1 CD2 REMARK 470 GLU C 141 CD OE1 OE2 REMARK 470 GLU C 142 OE1 OE2 REMARK 470 LYS C 144 CG CD CE NZ REMARK 470 ASP C 145 CG OD1 OD2 REMARK 470 ARG C 146 CG CD NE CZ NH1 NH2 REMARK 470 CYS C 147 SG REMARK 470 THR C 148 OG1 CG2 REMARK 470 GLU C 151 CG CD OE1 OE2 REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 SER C 156 OG REMARK 470 ILE C 159 CG1 CG2 CD1 REMARK 470 LEU C 161 CG CD1 CD2 REMARK 470 LYS C 164 CE NZ REMARK 470 LEU C 166 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 82 O TYR C 117 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 437 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG L 437 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 350 -82.66 -167.90 REMARK 500 ASP L 374 144.39 -28.81 REMARK 500 ASP L 406 -121.93 -110.35 REMARK 500 ARG L 459 -13.12 69.62 REMARK 500 ASP L 478 81.93 46.75 REMARK 500 LYS L 504 108.80 -49.26 REMARK 500 ARG L 506 58.55 31.88 REMARK 500 TYR L 552 -65.85 -106.20 REMARK 500 PHE L 559 -0.64 90.62 REMARK 500 SER L 578 -34.24 77.57 REMARK 500 ARG C 21 93.06 -66.27 REMARK 500 SER C 24 32.16 -161.55 REMARK 500 ASP C 43 45.95 -171.24 REMARK 500 LYS C 44 43.36 -27.25 REMARK 500 GLN C 62 -107.90 -123.75 REMARK 500 ILE C 131 97.63 -26.19 REMARK 500 ASP C 145 -51.53 -28.00 REMARK 500 ARG C 146 -56.80 66.60 REMARK 500 SER C 156 -60.21 79.48 REMARK 500 ALA C 157 14.32 -55.78 REMARK 500 GLU C 162 53.05 35.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY L 618 PRO L 619 147.48 REMARK 500 ASP C 43 LYS C 44 -149.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGS L 701 DBREF 5L6W L 330 637 UNP P53667 LIMK1_HUMAN 330 637 DBREF 5L6W C 1 166 UNP P23528 COF1_HUMAN 1 166 SEQADV 5L6W SER L 328 UNP P53667 EXPRESSION TAG SEQADV 5L6W MET L 329 UNP P53667 EXPRESSION TAG SEQADV 5L6W SER C 0 UNP P23528 EXPRESSION TAG SEQADV 5L6W CYS C 3 UNP P23528 SER 3 ENGINEERED MUTATION SEQRES 1 L 310 SER MET PRO HIS ARG ILE PHE ARG PRO SER ASP LEU ILE SEQRES 2 L 310 HIS GLY GLU VAL LEU GLY LYS GLY CYS PHE GLY GLN ALA SEQRES 3 L 310 ILE LYS VAL THR HIS ARG GLU THR GLY GLU VAL MET VAL SEQRES 4 L 310 MET LYS GLU LEU ILE ARG PHE ASP GLU GLU THR GLN ARG SEQRES 5 L 310 THR PHE LEU LYS GLU VAL LYS VAL MET ARG CYS LEU GLU SEQRES 6 L 310 HIS PRO ASN VAL LEU LYS PHE ILE GLY VAL LEU TYR LYS SEQRES 7 L 310 ASP LYS ARG LEU ASN PHE ILE THR GLU TYR ILE LYS GLY SEQRES 8 L 310 GLY THR LEU ARG GLY ILE ILE LYS SER MET ASP SER GLN SEQRES 9 L 310 TYR PRO TRP SER GLN ARG VAL SER PHE ALA LYS ASP ILE SEQRES 10 L 310 ALA SER GLY MET ALA TYR LEU HIS SER MET ASN ILE ILE SEQRES 11 L 310 HIS ARG ASP LEU ASN SER HIS ASN CYS LEU VAL ARG GLU SEQRES 12 L 310 ASN LYS ASN VAL VAL VAL ALA ASP PHE GLY LEU ALA ARG SEQRES 13 L 310 LEU MET VAL ASP GLU LYS THR GLN PRO GLU GLY LEU ARG SEQRES 14 L 310 SER LEU LYS LYS PRO ASP ARG LYS LYS ARG TYR THR VAL SEQRES 15 L 310 VAL GLY ASN PRO TYR TRP MET ALA PRO GLU MET ILE ASN SEQRES 16 L 310 GLY ARG SER TYR ASP GLU LYS VAL ASP VAL PHE SER PHE SEQRES 17 L 310 GLY ILE VAL LEU CYS GLU ILE ILE GLY ARG VAL ASN ALA SEQRES 18 L 310 ASP PRO ASP TYR LEU PRO ARG THR MET ASP PHE GLY LEU SEQRES 19 L 310 ASN VAL ARG GLY PHE LEU ASP ARG TYR CYS PRO PRO ASN SEQRES 20 L 310 CYS PRO PRO SER PHE PHE PRO ILE THR VAL ARG CYS CYS SEQRES 21 L 310 ASP LEU ASP PRO GLU LYS ARG PRO SER PHE VAL LYS LEU SEQRES 22 L 310 GLU HIS TRP LEU GLU THR LEU ARG MET HIS LEU ALA GLY SEQRES 23 L 310 HIS LEU PRO LEU GLY PRO GLN LEU GLU GLN LEU ASP ARG SEQRES 24 L 310 GLY PHE TRP GLU THR TYR ARG ARG GLY GLU SER SEQRES 1 C 167 SER MET ALA CYS GLY VAL ALA VAL SER ASP GLY VAL ILE SEQRES 2 C 167 LYS VAL PHE ASN ASP MET LYS VAL ARG LYS SER SER THR SEQRES 3 C 167 PRO GLU GLU VAL LYS LYS ARG LYS LYS ALA VAL LEU PHE SEQRES 4 C 167 CYS LEU SER GLU ASP LYS LYS ASN ILE ILE LEU GLU GLU SEQRES 5 C 167 GLY LYS GLU ILE LEU VAL GLY ASP VAL GLY GLN THR VAL SEQRES 6 C 167 ASP ASP PRO TYR ALA THR PHE VAL LYS MET LEU PRO ASP SEQRES 7 C 167 LYS ASP CYS ARG TYR ALA LEU TYR ASP ALA THR TYR GLU SEQRES 8 C 167 THR LYS GLU SER LYS LYS GLU ASP LEU VAL PHE ILE PHE SEQRES 9 C 167 TRP ALA PRO GLU SER ALA PRO LEU LYS SER LYS MET ILE SEQRES 10 C 167 TYR ALA SER SER LYS ASP ALA ILE LYS LYS LYS LEU THR SEQRES 11 C 167 GLY ILE LYS HIS GLU LEU GLN ALA ASN CYS TYR GLU GLU SEQRES 12 C 167 VAL LYS ASP ARG CYS THR LEU ALA GLU LYS LEU GLY GLY SEQRES 13 C 167 SER ALA VAL ILE SER LEU GLU GLY LYS PRO LEU HET AGS L 701 31 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 AGS C10 H16 N5 O12 P3 S HELIX 1 AA1 ARG L 335 SER L 337 5 3 HELIX 2 AA2 ASP L 374 CYS L 390 1 17 HELIX 3 AA3 THR L 420 SER L 427 1 8 HELIX 4 AA4 PRO L 433 MET L 454 1 22 HELIX 5 AA5 ALA L 517 ASN L 522 1 6 HELIX 6 AA6 GLU L 528 ARG L 545 1 18 HELIX 7 AA7 ASN L 562 TYR L 570 1 9 HELIX 8 AA8 SER L 578 CYS L 587 1 10 HELIX 9 AA9 SER L 596 GLY L 613 1 18 HELIX 10 AB1 GLY L 618 TYR L 632 1 15 HELIX 11 AB2 SER C 8 VAL C 20 1 13 HELIX 12 AB3 THR C 25 ARG C 32 1 8 HELIX 13 AB4 GLY C 58 VAL C 60 5 3 HELIX 14 AB5 ASP C 66 LEU C 75 1 10 HELIX 15 AB6 PRO C 110 LEU C 128 1 19 HELIX 16 AB7 CYS C 139 ASP C 145 1 7 HELIX 17 AB8 ARG C 146 GLY C 155 1 10 SHEET 1 AA1 6 ARG L 332 ILE L 333 0 SHEET 2 AA1 6 PHE L 399 TYR L 404 1 O VAL L 402 N ARG L 332 SHEET 3 AA1 6 LEU L 409 GLU L 414 -1 O ILE L 412 N ILE L 400 SHEET 4 AA1 6 VAL L 364 LEU L 370 -1 N VAL L 366 O THR L 413 SHEET 5 AA1 6 GLY L 351 HIS L 358 -1 N ILE L 354 O MET L 367 SHEET 6 AA1 6 LEU L 339 GLY L 346 -1 N ILE L 340 O THR L 357 SHEET 1 AA2 2 ILE L 456 ILE L 457 0 SHEET 2 AA2 2 ARG L 483 LEU L 484 -1 O ARG L 483 N ILE L 457 SHEET 1 AA3 2 CYS L 466 VAL L 468 0 SHEET 2 AA3 2 VAL L 474 VAL L 476 -1 O VAL L 475 N LEU L 467 SHEET 1 AA4 6 ALA C 6 VAL C 7 0 SHEET 2 AA4 6 ASN C 46 LEU C 56 1 O ILE C 47 N ALA C 6 SHEET 3 AA4 6 LYS C 33 LEU C 40 -1 N LYS C 34 O ILE C 55 SHEET 4 AA4 6 ARG C 81 GLU C 90 -1 O ASP C 86 N LYS C 34 SHEET 5 AA4 6 LYS C 95 TRP C 104 -1 O ASP C 98 N ALA C 87 SHEET 6 AA4 6 GLU C 134 ALA C 137 1 O ALA C 137 N PHE C 103 SHEET 1 AA5 5 ALA C 6 VAL C 7 0 SHEET 2 AA5 5 ASN C 46 LEU C 56 1 O ILE C 47 N ALA C 6 SHEET 3 AA5 5 LYS C 33 LEU C 40 -1 N LYS C 34 O ILE C 55 SHEET 4 AA5 5 ARG C 81 GLU C 90 -1 O ASP C 86 N LYS C 34 SHEET 5 AA5 5 SER C 160 LEU C 161 -1 O SER C 160 N GLU C 90 SITE 1 AC1 12 CYS C 3 LEU L 345 VAL L 366 LYS L 368 SITE 2 AC1 12 GLU L 414 ILE L 416 THR L 420 ASP L 460 SITE 3 AC1 12 HIS L 464 ASN L 465 LEU L 467 ASP L 478 CRYST1 80.679 80.679 237.590 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012395 0.007156 0.000000 0.00000 SCALE2 0.000000 0.014312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004209 0.00000