PDB Short entry for 5L7B HEADER DNA BINDING PROTEIN 02-JUN-16 5L7B TITLE SOLUTION STRUCTURE OF THE HUMAN SNF5/INI1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR COMPND 3 OF CHROMATIN SUBFAMILY B MEMBER 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: BRG1-ASSOCIATED FACTOR 47,BAF47,INTEGRASE INTERACTOR 1 COMPND 6 PROTEIN,SNF5 HOMOLOG,HSNF5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMARCB1, BAF47, INI1, SNF5L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS SNF5/INI1 NMR STRUCTURE, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.D.ALLEN,G.ZINZALLA,M.BYCROFT REVDAT 5 06-NOV-19 5L7B 1 REMARK REVDAT 4 10-APR-19 5L7B 1 SOURCE REVDAT 3 27-FEB-19 5L7B 1 JRNL REVDAT 2 10-OCT-18 5L7B 1 JRNL REVDAT 1 10-MAY-17 5L7B 0 JRNL AUTH S.SAMMAK,M.D.ALLEN,N.HAMDANI,M.BYCROFT,G.ZINZALLA JRNL TITL THE STRUCTURE OF INI1/HSNF5 RPT1 AND ITS INTERACTIONS WITH JRNL TITL 2 THE C-MYC:MAX HETERODIMER PROVIDE INSIGHTS INTO THE JRNL TITL 3 INTERPLAY BETWEEN MYC AND THE SWI/SNF CHROMATIN REMODELING JRNL TITL 4 COMPLEX. JRNL REF FEBS J. V. 285 4165 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30222246 JRNL DOI 10.1111/FEBS.14660 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5L7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000246. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE, 100 REMARK 210 MM SODIUM CHLORIDE, 5 MM [U-100% REMARK 210 2H] BETA-MERCAPTOETHANOL, 90% REMARK 210 H2O/10% D2O; 20 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM [U-100% 2H] BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCACO; REMARK 210 3D HNHB; 3D HBHA(CO)NH; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 181 REMARK 465 GLY A 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 203 117.17 -168.61 REMARK 500 1 LEU A 212 -45.07 -154.36 REMARK 500 1 THR A 250 55.53 -116.82 REMARK 500 1 ASP A 251 63.95 -112.52 REMARK 500 1 GLU A 255 -46.20 -151.85 REMARK 500 1 GLN A 257 177.42 60.40 REMARK 500 2 ALA A 203 113.44 -168.64 REMARK 500 2 LEU A 212 -73.49 -151.43 REMARK 500 2 MET A 213 103.54 -56.73 REMARK 500 3 ALA A 203 111.95 -166.34 REMARK 500 3 LEU A 212 -74.90 -151.57 REMARK 500 3 MET A 213 104.06 -55.16 REMARK 500 3 SER A 252 50.96 -147.13 REMARK 500 3 ILE A 253 52.57 -108.98 REMARK 500 3 LEU A 254 55.26 -140.33 REMARK 500 4 ALA A 203 111.94 -168.57 REMARK 500 4 LEU A 212 -43.83 -154.48 REMARK 500 4 ASP A 251 98.92 -55.65 REMARK 500 4 ILE A 253 87.24 51.29 REMARK 500 4 LEU A 254 31.59 -98.71 REMARK 500 5 LEU A 212 -46.65 -150.32 REMARK 500 5 LEU A 254 32.34 -98.66 REMARK 500 5 ASP A 256 -44.53 -163.65 REMARK 500 6 ALA A 203 119.29 -161.97 REMARK 500 6 LYS A 211 27.85 -146.60 REMARK 500 6 LEU A 212 -44.78 -150.14 REMARK 500 6 ASN A 229 107.62 -59.30 REMARK 500 7 LYS A 211 33.62 -149.14 REMARK 500 7 LEU A 212 -43.56 -151.04 REMARK 500 7 ASP A 251 -68.93 69.57 REMARK 500 7 LEU A 254 39.23 -98.24 REMARK 500 7 GLU A 255 171.62 60.91 REMARK 500 7 ASP A 256 42.31 -96.67 REMARK 500 8 LEU A 212 -74.85 -152.50 REMARK 500 8 MET A 213 103.79 -53.24 REMARK 500 8 THR A 250 49.93 -102.15 REMARK 500 8 ASP A 251 38.16 -97.61 REMARK 500 8 LEU A 254 32.24 -98.86 REMARK 500 9 ALA A 203 112.07 -165.62 REMARK 500 9 LEU A 212 -56.95 -146.39 REMARK 500 9 ASN A 229 107.56 -59.97 REMARK 500 9 SER A 252 -78.08 -164.10 REMARK 500 10 LYS A 211 24.42 -145.07 REMARK 500 10 LEU A 212 -47.30 -145.56 REMARK 500 10 ASP A 251 78.67 61.03 REMARK 500 10 ILE A 253 31.66 -150.53 REMARK 500 10 GLN A 257 37.42 -175.96 REMARK 500 11 ALA A 203 111.86 -164.33 REMARK 500 11 LEU A 212 -70.08 -154.50 REMARK 500 12 LEU A 212 -74.43 -151.84 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L7A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE REMARK 900 RELATED ID: 34004 RELATED DB: BMRB DBREF 5L7B A 184 258 UNP Q12824 SNF5_HUMAN 184 258 SEQADV 5L7B GLY A 181 UNP Q12824 EXPRESSION TAG SEQADV 5L7B GLY A 182 UNP Q12824 EXPRESSION TAG SEQADV 5L7B SER A 183 UNP Q12824 EXPRESSION TAG SEQRES 1 A 78 GLY GLY SER GLU VAL LEU VAL PRO ILE ARG LEU ASP MET SEQRES 2 A 78 GLU ILE ASP GLY GLN LYS LEU ARG ASP ALA PHE THR TRP SEQRES 3 A 78 ASN MET ASN GLU LYS LEU MET THR PRO GLU MET PHE SER SEQRES 4 A 78 GLU ILE LEU CYS ASP ASP LEU ASP LEU ASN PRO LEU THR SEQRES 5 A 78 PHE VAL PRO ALA ILE ALA SER ALA ILE ARG GLN GLN ILE SEQRES 6 A 78 GLU SER TYR PRO THR ASP SER ILE LEU GLU ASP GLN SER HELIX 1 AA1 THR A 214 ASP A 227 1 14 HELIX 2 AA2 ASN A 229 SER A 247 1 19 SHEET 1 AA1 2 LEU A 186 ILE A 195 0 SHEET 2 AA1 2 GLN A 198 ASN A 207 -1 O ASP A 202 N LEU A 191 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000