PDB Short entry for 5LBZ HEADER OXIDOREDUCTASE 17-JUN-16 5LBZ TITLE STRUCTURE OF THE HUMAN QUINONE REDUCTASE 2 (NQO2) IN COMPLEX WITH TITLE 2 PACRITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE [QUINONE]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NRH DEHYDROGENASE [QUINONE] 2,NRH:QUINONE OXIDOREDUCTASE 2, COMPND 5 QUINONE REDUCTASE 2,QR2; COMPND 6 EC: 1.10.5.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO2, NMOR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS QUINONE REDUCTASE 2, KINASE INHIBITOR, PANCRITINIB, KEYWDS 2 RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE (NQO2), OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHNEIDER,G.MEDARD,B.KUSTER REVDAT 4 10-JAN-24 5LBZ 1 REMARK REVDAT 3 13-DEC-17 5LBZ 1 JRNL REVDAT 2 06-DEC-17 5LBZ 1 JRNL REVDAT 1 29-NOV-17 5LBZ 0 JRNL AUTH S.KLAEGER,S.HEINZLMEIR,M.WILHELM,H.POLZER,B.VICK,P.A.KOENIG, JRNL AUTH 2 M.REINECKE,B.RUPRECHT,S.PETZOLDT,C.MENG,J.ZECHA,K.REITER, JRNL AUTH 3 H.QIAO,D.HELM,H.KOCH,M.SCHOOF,G.CANEVARI,E.CASALE, JRNL AUTH 4 S.R.DEPAOLINI,A.FEUCHTINGER,Z.WU,T.SCHMIDT,L.RUECKERT, JRNL AUTH 5 W.BECKER,J.HUENGES,A.K.GARZ,B.O.GOHLKE,D.P.ZOLG,G.KAYSER, JRNL AUTH 6 T.VOODER,R.PREISSNER,H.HAHNE,N.TONISSON,K.KRAMER,K.GOTZE, JRNL AUTH 7 F.BASSERMANN,J.SCHLEGL,H.C.EHRLICH,S.AICHE,A.WALCH, JRNL AUTH 8 P.A.GREIF,S.SCHNEIDER,E.R.FELDER,J.RULAND,G.MEDARD, JRNL AUTH 9 I.JEREMIAS,K.SPIEKERMANN,B.KUSTER JRNL TITL THE TARGET LANDSCAPE OF CLINICAL KINASE DRUGS. JRNL REF SCIENCE V. 358 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 29191878 JRNL DOI 10.1126/SCIENCE.AAN4368 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 93339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.110 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.131 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6098 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.1500 REMARK 3 BIN FREE R VALUE SET COUNT : 320 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 198 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.146 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4020 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3670 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5499 ; 1.609 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8483 ; 1.204 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;34.757 ;24.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;11.382 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.468 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 584 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4490 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 948 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1877 ; 1.633 ; 1.035 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1876 ; 1.590 ; 1.032 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2364 ; 1.916 ; 1.564 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2365 ; 1.917 ; 1.565 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2143 ; 4.488 ; 1.411 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2128 ; 4.443 ; 1.396 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3108 ; 4.833 ; 2.676 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5345 ; 4.344 ;14.780 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5108 ; 4.098 ;13.723 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7686 ; 7.698 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 91 ;29.752 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7898 ;13.608 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 229 B 3 229 15610 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5LBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM SULPHATE, 2.2 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.72700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.72700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 417 O HOH B 451 2454 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 193 CD GLU A 193 OE1 0.077 REMARK 500 GLU B 193 CD GLU B 193 OE1 0.068 REMARK 500 GLU B 198 CD GLU B 198 OE2 -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 163 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 VAL B 146 CG1 - CB - CG2 ANGL. DEV. = -11.6 DEGREES REMARK 500 ASP B 163 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 132 -128.89 53.85 REMARK 500 TYR A 155 47.79 -97.41 REMARK 500 TYR B 132 -122.82 54.72 REMARK 500 TYR B 155 52.91 -94.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 ND1 REMARK 620 2 HIS A 177 ND1 96.1 REMARK 620 3 CYS A 222 O 102.6 103.8 REMARK 620 4 CYS A 222 O 101.4 107.1 3.3 REMARK 620 5 CYS A 222 SG 130.1 123.1 96.7 95.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 173 ND1 REMARK 620 2 HIS B 177 ND1 101.2 REMARK 620 3 CYS B 222 O 101.8 117.1 REMARK 620 4 CYS B 222 O 102.8 106.9 10.5 REMARK 620 5 CYS B 222 SG 127.2 121.3 86.2 93.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6T3 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6T3 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 305 DBREF 5LBZ A 0 230 UNP P16083 NQO2_HUMAN 1 231 DBREF 5LBZ B 0 230 UNP P16083 NQO2_HUMAN 1 231 SEQADV 5LBZ HIS A 231 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS A 232 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS A 233 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS A 234 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS A 235 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS A 236 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS B 231 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS B 232 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS B 233 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS B 234 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS B 235 UNP P16083 EXPRESSION TAG SEQADV 5LBZ HIS B 236 UNP P16083 EXPRESSION TAG SEQRES 1 A 237 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 A 237 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 A 237 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 A 237 SER ASP LEU TYR ALA MET ASN LEU GLU PRO ARG ALA THR SEQRES 5 A 237 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 A 237 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 A 237 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 A 237 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 A 237 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 A 237 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 A 237 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 A 237 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 A 237 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 A 237 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 A 237 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 A 237 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 A 237 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 A 237 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN HIS HIS HIS SEQRES 19 A 237 HIS HIS HIS SEQRES 1 B 237 MET ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN SEQRES 2 B 237 GLU PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA SEQRES 3 B 237 VAL ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SEQRES 4 B 237 SER ASP LEU TYR ALA MET ASN LEU GLU PRO ARG ALA THR SEQRES 5 B 237 ASP LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL SEQRES 6 B 237 PHE ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN SEQRES 7 B 237 ARG SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS SEQRES 8 B 237 VAL ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU SEQRES 9 B 237 TYR TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET SEQRES 10 B 237 ASP ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO SEQRES 11 B 237 GLY PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA SEQRES 12 B 237 LEU LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR SEQRES 13 B 237 THR LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU SEQRES 14 B 237 TRP PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE SEQRES 15 B 237 LYS VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE SEQRES 16 B 237 ALA SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SEQRES 17 B 237 SER GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE SEQRES 18 B 237 PRO CYS THR ALA HIS TRP HIS PHE GLY GLN HIS HIS HIS SEQRES 19 B 237 HIS HIS HIS HET FAD A 301 53 HET 6T3 A 302 35 HET SO4 A 303 5 HET SO4 A 304 5 HET ZN A 305 1 HET FAD B 301 53 HET 6T3 B 302 35 HET SO4 B 303 5 HET SO4 B 304 5 HET ZN B 305 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 6T3 11-(2-PYRROLIDIN-1-YL-ETHOXY)-14,19-DIOXA-5,7,26- HETNAM 2 6T3 TRIAZA-TETRACYCLO[19.3.1.1(2,6).1(8,12)]HEPTACOSA- HETNAM 3 6T3 1(25),2(26),3,5,8,10,12(27),16,21,23-DECAENE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 6T3 2(C28 H32 N4 O3) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 ZN 2(ZN 2+) FORMUL 13 HOH *427(H2 O) HELIX 1 AA1 SER A 16 GLY A 33 1 18 HELIX 2 AA2 THR A 51 ILE A 55 5 5 HELIX 3 AA3 ASN A 66 ARG A 78 1 13 HELIX 4 AA4 ALA A 81 ALA A 94 1 14 HELIX 5 AA5 PRO A 109 LEU A 120 1 12 HELIX 6 AA6 PHE A 131 GLY A 135 5 5 HELIX 7 AA7 ASP A 163 HIS A 173 1 11 HELIX 8 AA8 SER A 196 THR A 213 1 18 HELIX 9 AA9 ILE A 214 GLU A 217 5 4 HELIX 10 AB1 THR A 223 GLY A 229 1 7 HELIX 11 AB2 SER B 16 GLN B 32 1 17 HELIX 12 AB3 THR B 51 ILE B 55 5 5 HELIX 13 AB4 ASN B 66 GLN B 77 1 12 HELIX 14 AB5 ALA B 81 ALA B 94 1 14 HELIX 15 AB6 PRO B 109 LEU B 120 1 12 HELIX 16 AB7 PHE B 131 GLY B 135 5 5 HELIX 17 AB8 ASP B 163 HIS B 173 1 11 HELIX 18 AB9 SER B 196 THR B 213 1 18 HELIX 19 AC1 ILE B 214 GLU B 217 5 4 HELIX 20 AC2 THR B 223 GLY B 229 1 7 SHEET 1 AA1 5 THR A 35 ASP A 40 0 SHEET 2 AA1 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA1 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA1 5 LEU A 141 THR A 148 1 O SER A 145 N PHE A 99 SHEET 5 AA1 5 LYS A 182 VAL A 183 1 O LYS A 182 N ALA A 142 SHEET 1 AA2 5 THR A 35 ASP A 40 0 SHEET 2 AA2 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 AA2 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 AA2 5 LEU A 141 THR A 148 1 O SER A 145 N PHE A 99 SHEET 5 AA2 5 GLN A 187 PHE A 190 1 O SER A 189 N VAL A 146 SHEET 1 AA3 5 THR B 35 ASP B 40 0 SHEET 2 AA3 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA3 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA3 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 AA3 5 LYS B 182 VAL B 183 1 O LYS B 182 N ALA B 142 SHEET 1 AA4 5 THR B 35 ASP B 40 0 SHEET 2 AA4 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 AA4 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 AA4 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 AA4 5 GLN B 187 PHE B 190 1 O SER B 189 N VAL B 146 LINK ND1 HIS A 173 ZN ZN A 305 1555 1555 2.31 LINK ND1 HIS A 177 ZN ZN A 305 1555 1555 2.33 LINK O ACYS A 222 ZN ZN A 305 1555 1555 2.14 LINK O BCYS A 222 ZN ZN A 305 1555 1555 2.08 LINK SG ACYS A 222 ZN ZN A 305 1555 1555 2.19 LINK ND1 HIS B 173 ZN ZN B 305 1555 1555 2.42 LINK ND1 HIS B 177 ZN ZN B 305 1555 1555 2.30 LINK O ACYS B 222 ZN ZN B 305 1555 1555 2.03 LINK O BCYS B 222 ZN ZN B 305 1555 1555 2.46 LINK SG ACYS B 222 ZN ZN B 305 1555 1555 2.41 CISPEP 1 ILE A 128 PRO A 129 0 -2.33 CISPEP 2 ILE B 128 PRO B 129 0 -2.97 SITE 1 AC1 30 HIS A 11 LYS A 15 SER A 16 PHE A 17 SITE 2 AC1 30 ASN A 18 SER A 20 PRO A 102 LEU A 103 SITE 3 AC1 30 TYR A 104 TRP A 105 PHE A 106 THR A 147 SITE 4 AC1 30 THR A 148 GLY A 149 GLY A 150 TYR A 155 SITE 5 AC1 30 GLU A 193 GLU A 197 ARG A 200 LYS A 201 SITE 6 AC1 30 HOH A 416 HOH A 429 HOH A 431 HOH A 443 SITE 7 AC1 30 HOH A 463 HOH A 466 HOH A 549 HOH A 564 SITE 8 AC1 30 ASP B 117 6T3 B 302 SITE 1 AC2 10 PHE A 126 ILE A 128 PHE A 178 HOH A 427 SITE 2 AC2 10 HOH A 523 TRP B 105 MET B 154 ASN B 161 SITE 3 AC2 10 GLU B 193 FAD B 301 SITE 1 AC3 5 HIS A 72 HOH A 433 HOH A 478 HOH A 530 SITE 2 AC3 5 HOH A 542 SITE 1 AC4 7 SER A 196 GLU A 198 PRO A 221 THR A 223 SITE 2 AC4 7 HIS A 225 TRP A 226 HOH A 455 SITE 1 AC5 3 HIS A 173 HIS A 177 CYS A 222 SITE 1 AC6 29 ASP A 117 6T3 A 302 HIS B 11 LYS B 15 SITE 2 AC6 29 SER B 16 PHE B 17 ASN B 18 SER B 20 SITE 3 AC6 29 PRO B 102 LEU B 103 TYR B 104 TRP B 105 SITE 4 AC6 29 PHE B 106 THR B 147 THR B 148 GLY B 149 SITE 5 AC6 29 GLY B 150 TYR B 155 GLU B 193 GLU B 197 SITE 6 AC6 29 ARG B 200 HOH B 407 HOH B 410 HOH B 411 SITE 7 AC6 29 HOH B 423 HOH B 425 HOH B 446 HOH B 534 SITE 8 AC6 29 HOH B 537 SITE 1 AC7 10 TRP A 105 PHE A 106 GLY A 149 GLY A 150 SITE 2 AC7 10 ASN A 161 FAD A 301 PHE B 126 ILE B 128 SITE 3 AC7 10 PHE B 178 HOH B 484 SITE 1 AC8 3 GLU A 47 ARG A 49 ARG B 49 SITE 1 AC9 2 ARG B 165 HOH B 458 SITE 1 AD1 3 HIS B 173 HIS B 177 CYS B 222 CRYST1 61.454 79.220 106.230 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009414 0.00000