PDB Short entry for 5LCM HEADER DNA BINDING PROTEIN 22-JUN-16 5LCM TITLE STRUCTURE OF THE RAD14 DNA-BINDING DOMAIN IN COMPLEX WITH N2- TITLE 2 ACETYLAMINONAPHTYL- GUANINE CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN RAD14; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*CP*TP*CP*TP*AP*CP*(AAN)P*TP*CP*AP*TP*CP*A)- COMPND 7 3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*TP*GP*AP*TP*GP*AP*CP*GP*TP*AP*GP*AP*G)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: RAD14, YMR201C, YM8325.02C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 16 ORGANISM_TAXID: 4932 KEYWDS NUCLEOTIDE EXCISION REPAIR DNA DAMAGE RECOGNITION, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHNEIDER,C.EBERT,N.SIMON,T.CARELL REVDAT 4 24-JAN-18 5LCM 1 SOURCE REVDAT 3 26-JUL-17 5LCM 1 REVDAT 2 07-JUN-17 5LCM 1 JRNL REVDAT 1 10-MAY-17 5LCM 0 JRNL AUTH C.EBERT,N.SIMON,S.SCHNEIDER,T.CARELL JRNL TITL STRUCTURAL INSIGHTS INTO THE RECOGNITION OF N(2) -ARYL- AND JRNL TITL 2 C8-ARYL DNA LESIONS BY THE REPAIR PROTEIN XPA/RAD14. JRNL REF CHEMBIOCHEM V. 18 1379 2017 JRNL REFN ESSN 1439-7633 JRNL PMID 28444956 JRNL DOI 10.1002/CBIC.201700169 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1892 REMARK 3 NUCLEIC ACID ATOMS : 578 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.824 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3263 ; 0.018 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 2478 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4643 ; 2.184 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5788 ; 1.605 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 6.890 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;35.277 ;24.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;15.237 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;25.016 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2883 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 725 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 922 ; 0.959 ; 1.641 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 921 ; 0.958 ; 1.641 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1151 ; 1.395 ; 2.456 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1152 ; 1.395 ; 2.457 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2341 ; 0.996 ; 1.737 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2340 ; 0.996 ; 1.737 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3489 ; 1.619 ; 2.579 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4118 ; 3.752 ;16.993 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4099 ; 3.716 ;16.829 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 48.3829 49.9577 -66.0174 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.0654 REMARK 3 T33: 0.0488 T12: 0.0100 REMARK 3 T13: 0.0009 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.9461 L22: 2.6335 REMARK 3 L33: 9.8801 L12: 1.8209 REMARK 3 L13: -3.1576 L23: -3.8187 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: 0.1923 S13: -0.2167 REMARK 3 S21: -0.1944 S22: 0.0737 S23: 0.0697 REMARK 3 S31: 0.5067 S32: 0.0756 S33: -0.0421 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5878 57.9031 -64.7312 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.0924 REMARK 3 T33: 0.0262 T12: 0.0017 REMARK 3 T13: 0.0342 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 9.0433 L22: 0.4118 REMARK 3 L33: 9.6484 L12: -1.1213 REMARK 3 L13: -6.0621 L23: 1.9853 REMARK 3 S TENSOR REMARK 3 S11: 0.3841 S12: 0.3760 S13: 0.3101 REMARK 3 S21: -0.0858 S22: -0.0043 S23: -0.0764 REMARK 3 S31: -0.4531 S32: -0.0517 S33: -0.3799 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4338 58.6983 -48.9801 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.0909 REMARK 3 T33: 0.1036 T12: 0.0268 REMARK 3 T13: 0.0397 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 11.6437 L22: 2.9586 REMARK 3 L33: 1.8228 L12: 0.5514 REMARK 3 L13: 1.2394 L23: 1.2334 REMARK 3 S TENSOR REMARK 3 S11: 0.2820 S12: 0.1298 S13: 0.4769 REMARK 3 S21: 0.0418 S22: -0.1475 S23: 0.2576 REMARK 3 S31: -0.1256 S32: -0.3549 S33: -0.1345 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 239 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6885 47.9474 -47.4871 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.0992 REMARK 3 T33: 0.0384 T12: -0.0311 REMARK 3 T13: -0.0303 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 10.6170 L22: 3.8517 REMARK 3 L33: 8.1528 L12: -1.1074 REMARK 3 L13: -7.8793 L23: -0.5597 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: -0.2064 S13: -0.4869 REMARK 3 S21: 0.2632 S22: -0.0623 S23: 0.1025 REMARK 3 S31: 0.4642 S32: -0.0267 S33: 0.1807 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 47.1656 56.5955 -41.6056 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.0717 REMARK 3 T33: 0.0373 T12: 0.0031 REMARK 3 T13: 0.0057 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 6.5221 L22: 3.9139 REMARK 3 L33: 10.1586 L12: -0.6369 REMARK 3 L13: 4.1616 L23: 1.5274 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.0666 S13: 0.2517 REMARK 3 S21: 0.1279 S22: 0.0722 S23: -0.2417 REMARK 3 S31: 0.0954 S32: -0.0127 S33: -0.1747 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5274 54.1804 -55.5937 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.0934 REMARK 3 T33: 0.0547 T12: 0.0437 REMARK 3 T13: -0.0325 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 10.6119 L22: 0.7395 REMARK 3 L33: 4.6046 L12: 0.8404 REMARK 3 L13: 1.5543 L23: -0.5625 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.2066 S13: 0.1630 REMARK 3 S21: -0.1852 S22: -0.0029 S23: 0.1724 REMARK 3 S31: -0.0468 S32: -0.3908 S33: -0.0731 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2240 59.0533 -54.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.4732 REMARK 3 T33: 0.4461 T12: 0.0718 REMARK 3 T13: -0.0224 T23: 0.1801 REMARK 3 L TENSOR REMARK 3 L11: 4.0596 L22: 12.5302 REMARK 3 L33: 9.1963 L12: -0.8931 REMARK 3 L13: 2.4060 L23: 4.0173 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.8381 S13: 0.9479 REMARK 3 S21: -0.6443 S22: -0.2289 S23: 0.2458 REMARK 3 S31: -0.6231 S32: -0.6103 S33: 0.1945 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3157 68.3499 -43.2098 REMARK 3 T TENSOR REMARK 3 T11: 0.4445 T22: 0.5656 REMARK 3 T33: 0.6484 T12: 0.1997 REMARK 3 T13: -0.0323 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.2723 L22: 11.1340 REMARK 3 L33: 9.2895 L12: 2.8518 REMARK 3 L13: -0.4697 L23: 5.4930 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: -0.1926 S13: 0.1016 REMARK 3 S21: 0.0337 S22: -0.4148 S23: 0.4205 REMARK 3 S31: -0.5372 S32: -0.0371 S33: 0.3044 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 188 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6028 31.1549 -1.0469 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1622 REMARK 3 T33: 0.0793 T12: 0.0259 REMARK 3 T13: -0.0492 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.8214 L22: 2.1170 REMARK 3 L33: 11.1184 L12: 1.2023 REMARK 3 L13: -3.8702 L23: -4.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: -0.1291 S13: 0.0887 REMARK 3 S21: 0.1206 S22: -0.0570 S23: -0.1819 REMARK 3 S31: 0.0139 S32: 0.4675 S33: -0.0926 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 211 B 225 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7326 35.0235 -2.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.1504 REMARK 3 T33: 0.0509 T12: -0.0007 REMARK 3 T13: 0.0455 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.2444 L22: 8.1694 REMARK 3 L33: 8.0765 L12: -0.5821 REMARK 3 L13: 1.2618 L23: -6.2511 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0693 S13: -0.0849 REMARK 3 S21: 0.3321 S22: 0.4583 S23: 0.2236 REMARK 3 S31: -0.2001 S32: -0.5211 S33: -0.4412 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 226 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8742 45.1399 -18.1097 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.0892 REMARK 3 T33: 0.1007 T12: 0.0166 REMARK 3 T13: 0.0317 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.8174 L22: 10.8412 REMARK 3 L33: 2.9446 L12: 0.1887 REMARK 3 L13: 1.0874 L23: 0.0238 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: 0.0229 S13: 0.3441 REMARK 3 S21: 0.0904 S22: 0.2802 S23: 0.3565 REMARK 3 S31: -0.1896 S32: -0.0759 S33: -0.2004 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 239 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1760 46.7591 -21.8583 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1281 REMARK 3 T33: 0.0227 T12: -0.0274 REMARK 3 T13: 0.0354 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 10.6843 L22: 9.7382 REMARK 3 L33: 5.6004 L12: -1.4588 REMARK 3 L13: 1.1355 L23: -0.9487 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: 0.2438 S13: -0.0841 REMARK 3 S21: -0.2664 S22: -0.0775 S23: -0.2230 REMARK 3 S31: 0.0272 S32: 0.2739 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9328 37.7872 -17.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1079 REMARK 3 T33: 0.0614 T12: -0.0068 REMARK 3 T13: 0.0891 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 10.2864 L22: 12.5762 REMARK 3 L33: 11.4004 L12: 9.2598 REMARK 3 L13: 9.7153 L23: 11.8165 REMARK 3 S TENSOR REMARK 3 S11: 0.1202 S12: 0.0256 S13: -0.0975 REMARK 3 S21: -0.6315 S22: 0.2847 S23: -0.5497 REMARK 3 S31: -0.4244 S32: 0.2088 S33: -0.4049 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 255 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8037 32.6167 -27.4637 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.0614 REMARK 3 T33: 0.0593 T12: 0.0104 REMARK 3 T13: -0.0069 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 4.4610 L22: 3.9992 REMARK 3 L33: 10.4998 L12: 0.4228 REMARK 3 L13: -0.0669 L23: 4.1569 REMARK 3 S TENSOR REMARK 3 S11: 0.1650 S12: 0.2186 S13: -0.2929 REMARK 3 S21: -0.2018 S22: 0.0024 S23: 0.1475 REMARK 3 S31: -0.0143 S32: -0.1735 S33: -0.1674 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 267 B 283 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7736 48.3524 -11.9248 REMARK 3 T TENSOR REMARK 3 T11: 0.1360 T22: 0.1024 REMARK 3 T33: 0.1172 T12: 0.0186 REMARK 3 T13: 0.0402 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 1.7973 L22: 10.5510 REMARK 3 L33: 3.5139 L12: 1.5899 REMARK 3 L13: 0.3068 L23: -0.5762 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.2396 S13: 0.3933 REMARK 3 S21: 0.3138 S22: 0.1257 S23: 0.0779 REMARK 3 S31: -0.5222 S32: 0.0370 S33: -0.1250 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 284 B 303 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1638 58.9316 -17.5635 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.2642 REMARK 3 T33: 0.4705 T12: 0.0851 REMARK 3 T13: 0.0805 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 7.3532 L22: 2.0883 REMARK 3 L33: 13.3093 L12: -1.6732 REMARK 3 L13: 8.3379 L23: -3.3086 REMARK 3 S TENSOR REMARK 3 S11: -0.2815 S12: -0.3639 S13: 0.6589 REMARK 3 S21: 0.0368 S22: -0.0017 S23: 0.4414 REMARK 3 S31: -0.1250 S32: -0.9725 S33: 0.2832 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7584 60.9950 -40.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.0935 T22: 0.1552 REMARK 3 T33: 0.2183 T12: 0.0117 REMARK 3 T13: 0.0309 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 3.5382 L22: 2.5670 REMARK 3 L33: 10.4050 L12: -2.1866 REMARK 3 L13: 4.6826 L23: -0.6469 REMARK 3 S TENSOR REMARK 3 S11: -0.1713 S12: -0.3671 S13: -0.2494 REMARK 3 S21: 0.1180 S22: 0.3295 S23: 0.3183 REMARK 3 S31: -0.1297 S32: -0.2163 S33: -0.1582 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5342 56.2162 -29.9346 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.2741 REMARK 3 T33: 0.4678 T12: -0.0304 REMARK 3 T13: 0.0087 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 10.8213 L22: 1.9509 REMARK 3 L33: 1.9943 L12: 0.3054 REMARK 3 L13: -1.2564 L23: -1.2736 REMARK 3 S TENSOR REMARK 3 S11: -0.7053 S12: -0.5627 S13: -0.7447 REMARK 3 S21: 0.0029 S22: 0.2189 S23: 0.3126 REMARK 3 S31: -0.0575 S32: -0.2638 S33: 0.4864 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1437 44.0139 -35.2021 REMARK 3 T TENSOR REMARK 3 T11: 0.3797 T22: 0.4029 REMARK 3 T33: 0.4544 T12: 0.0532 REMARK 3 T13: -0.0902 T23: -0.1935 REMARK 3 L TENSOR REMARK 3 L11: 11.9993 L22: 4.1994 REMARK 3 L33: 5.1704 L12: -2.7070 REMARK 3 L13: -0.7779 L23: -4.0804 REMARK 3 S TENSOR REMARK 3 S11: 0.8974 S12: 0.4802 S13: -0.5171 REMARK 3 S21: -0.4514 S22: -0.4554 S23: 0.5575 REMARK 3 S31: 0.2266 S32: 0.1571 S33: -0.4420 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 6 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4919 42.2518 -29.7276 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1547 REMARK 3 T33: 0.2183 T12: -0.0508 REMARK 3 T13: -0.0054 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.8417 L22: 3.4456 REMARK 3 L33: 3.1393 L12: -2.3823 REMARK 3 L13: 1.4320 L23: -1.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.2153 S12: 0.2329 S13: 0.1788 REMARK 3 S21: -0.3690 S22: -0.2255 S23: -0.2347 REMARK 3 S31: 0.0064 S32: 0.3750 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 10 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0443 59.2041 -38.2013 REMARK 3 T TENSOR REMARK 3 T11: 0.3260 T22: 0.2409 REMARK 3 T33: 0.2981 T12: 0.0181 REMARK 3 T13: -0.0174 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.0878 L22: 0.0883 REMARK 3 L33: 0.4188 L12: 0.3049 REMARK 3 L13: -0.6735 L23: -0.1903 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.2059 S13: 0.0958 REMARK 3 S21: -0.0148 S22: 0.0379 S23: 0.0338 REMARK 3 S31: 0.0085 S32: -0.1146 S33: -0.0460 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 11 D 14 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5844 62.9531 -30.9333 REMARK 3 T TENSOR REMARK 3 T11: 0.5175 T22: 0.4717 REMARK 3 T33: 0.4455 T12: -0.0305 REMARK 3 T13: 0.0756 T23: -0.1164 REMARK 3 L TENSOR REMARK 3 L11: 7.2498 L22: 4.7487 REMARK 3 L33: 7.8605 L12: -5.6506 REMARK 3 L13: -4.5685 L23: 4.8221 REMARK 3 S TENSOR REMARK 3 S11: -0.8636 S12: -0.6871 S13: 0.4997 REMARK 3 S21: 0.5210 S22: 0.4747 S23: -0.1229 REMARK 3 S31: -0.3511 S32: 0.2293 S33: 0.3889 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28349 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC 5.8.0151 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM NITRATE 40% (V/V) 2 REMARK 280 -METHYL-1,3,-PROPANEDIOL, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.67250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.83625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.50875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 303 REMARK 465 LYS A 304 REMARK 465 LYS A 305 REMARK 465 TYR A 306 REMARK 465 ARG B 302 REMARK 465 GLU B 303 REMARK 465 LYS B 304 REMARK 465 LYS B 305 REMARK 465 TYR B 306 REMARK 465 DC C 15 REMARK 465 DC D 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 293 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 300 CG ND1 CD2 CE1 NE2 REMARK 470 DC D 8 C2 O2 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 288 O HOH A 501 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 508 O HOH B 502 4574 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 O3' DC C 2 P -0.080 REMARK 500 6TW C 8 O3' DT C 9 P -0.076 REMARK 500 DT C 9 O3' DC C 10 P -0.083 REMARK 500 DG D 1 O3' DT D 2 P -0.073 REMARK 500 DG D 12 O3' DA D 13 P -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 264 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 270 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU B 287 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ASP B 288 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DT C 3 N1 - C1' - C2' ANGL. DEV. = 10.6 DEGREES REMARK 500 DT C 3 N1 - C1' - C2' ANGL. DEV. = 11.0 DEGREES REMARK 500 DC C 4 N1 - C1' - C2' ANGL. DEV. = 8.9 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 12 O5' - P - OP1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT C 12 O5' - P - OP1 ANGL. DEV. = -12.1 DEGREES REMARK 500 DT C 12 N1 - C1' - C2' ANGL. DEV. = 9.5 DEGREES REMARK 500 DC C 13 N1 - C1' - C2' ANGL. DEV. = 9.6 DEGREES REMARK 500 DC C 13 N1 - C1' - C2' ANGL. DEV. = 9.4 DEGREES REMARK 500 DA C 14 O5' - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 DT D 5 N1 - C1' - C2' ANGL. DEV. = 8.4 DEGREES REMARK 500 DT D 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 12 O5' - P - OP1 ANGL. DEV. = -12.9 DEGREES REMARK 500 DG D 12 O5' - P - OP1 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG D 14 O5' - P - OP2 ANGL. DEV. = -8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 196 -58.14 -126.38 REMARK 500 SER A 259 133.24 -179.24 REMARK 500 ILE B 196 -57.58 -130.41 REMARK 500 SER B 259 131.14 -179.69 REMARK 500 HIS B 300 9.34 -62.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 CYS A 194 SG 106.4 REMARK 620 3 CYS A 213 SG 112.6 118.6 REMARK 620 4 CYS A 216 SG 113.0 106.6 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 191 SG REMARK 620 2 CYS B 194 SG 108.1 REMARK 620 3 CYS B 213 SG 112.3 118.2 REMARK 620 4 CYS B 216 SG 112.5 106.8 98.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 DBREF 5LCM A 188 306 UNP P28519 RAD14_YEAST 188 306 DBREF 5LCM B 188 306 UNP P28519 RAD14_YEAST 188 306 DBREF 5LCM C 1 15 PDB 5LCM 5LCM 1 15 DBREF 5LCM D 1 15 PDB 5LCM 5LCM 1 15 SEQRES 1 A 119 ALA PRO LYS CYS ILE GLU CYS HIS ILE ASN ILE GLU MET SEQRES 2 A 119 ASP PRO VAL LEU HIS ASP VAL PHE LYS LEU GLN VAL CYS SEQRES 3 A 119 LYS GLN CYS SER LYS GLU HIS PRO GLU LYS TYR ALA LEU SEQRES 4 A 119 LEU THR LYS THR GLU CYS LYS GLU ASP TYR PHE LEU THR SEQRES 5 A 119 ASP PRO GLU LEU ASN ASP GLU ASP LEU PHE HIS ARG LEU SEQRES 6 A 119 GLU LYS PRO ASN PRO HIS SER GLY THR PHE ALA ARG MET SEQRES 7 A 119 GLN LEU PHE VAL ARG CYS GLU VAL GLU ALA PHE ALA PHE SEQRES 8 A 119 LYS LYS TRP GLY GLY GLU GLU GLY LEU ASP GLU GLU TRP SEQRES 9 A 119 GLN ARG ARG GLU GLU GLY LYS ALA HIS ARG ARG GLU LYS SEQRES 10 A 119 LYS TYR SEQRES 1 B 119 ALA PRO LYS CYS ILE GLU CYS HIS ILE ASN ILE GLU MET SEQRES 2 B 119 ASP PRO VAL LEU HIS ASP VAL PHE LYS LEU GLN VAL CYS SEQRES 3 B 119 LYS GLN CYS SER LYS GLU HIS PRO GLU LYS TYR ALA LEU SEQRES 4 B 119 LEU THR LYS THR GLU CYS LYS GLU ASP TYR PHE LEU THR SEQRES 5 B 119 ASP PRO GLU LEU ASN ASP GLU ASP LEU PHE HIS ARG LEU SEQRES 6 B 119 GLU LYS PRO ASN PRO HIS SER GLY THR PHE ALA ARG MET SEQRES 7 B 119 GLN LEU PHE VAL ARG CYS GLU VAL GLU ALA PHE ALA PHE SEQRES 8 B 119 LYS LYS TRP GLY GLY GLU GLU GLY LEU ASP GLU GLU TRP SEQRES 9 B 119 GLN ARG ARG GLU GLU GLY LYS ALA HIS ARG ARG GLU LYS SEQRES 10 B 119 LYS TYR SEQRES 1 C 15 DG DC DT DC DT DA DC 6TW DT DC DA DT DC SEQRES 2 C 15 DA DC SEQRES 1 D 15 DG DT DG DA DT DG DA DC DG DT DA DG DA SEQRES 2 D 15 DG DC HET 6TW C 8 72 HET ZN A 401 1 HET ZN B 401 1 HETNAM 6TW [(2~{R},3~{S},5~{R})-5-[2-[(3-ACETAMIDONAPHTHALEN-2- HETNAM 2 6TW YL)AMINO]-6-OXIDANYLIDENE-1~{H}-PURIN-9-YL]-3- HETNAM 3 6TW OXIDANYL-OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHITE HETNAM ZN ZINC ION FORMUL 3 6TW C22 H23 N6 O7 P FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *112(H2 O) HELIX 1 AA1 ASP A 201 VAL A 207 1 7 HELIX 2 AA2 CYS A 213 HIS A 220 1 8 HELIX 3 AA3 HIS A 220 ALA A 225 1 6 HELIX 4 AA4 LYS A 229 PHE A 237 1 9 HELIX 5 AA5 THR A 239 ASN A 244 1 6 HELIX 6 AA6 ARG A 270 GLY A 282 1 13 HELIX 7 AA7 GLY A 282 ARG A 302 1 21 HELIX 8 AA8 ASP B 201 VAL B 207 1 7 HELIX 9 AA9 CYS B 213 HIS B 220 1 8 HELIX 10 AB1 HIS B 220 ALA B 225 1 6 HELIX 11 AB2 LYS B 229 PHE B 237 1 9 HELIX 12 AB3 THR B 239 ASN B 244 1 6 HELIX 13 AB4 ARG B 270 GLY B 282 1 13 HELIX 14 AB5 GLY B 282 HIS B 300 1 19 SHEET 1 AA1 3 LEU A 226 THR A 228 0 SHEET 2 AA1 3 MET A 265 VAL A 269 -1 O PHE A 268 N LEU A 227 SHEET 3 AA1 3 LEU A 252 LYS A 254 -1 N LEU A 252 O LEU A 267 SHEET 1 AA2 3 LEU B 226 THR B 228 0 SHEET 2 AA2 3 MET B 265 VAL B 269 -1 O PHE B 268 N LEU B 227 SHEET 3 AA2 3 LEU B 252 LYS B 254 -1 N LEU B 252 O LEU B 267 LINK SG CYS A 191 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 194 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 213 ZN ZN A 401 1555 1555 2.35 LINK SG CYS A 216 ZN ZN A 401 1555 1555 2.33 LINK SG CYS B 191 ZN ZN B 401 1555 1555 2.34 LINK SG CYS B 194 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 213 ZN ZN B 401 1555 1555 2.40 LINK SG CYS B 216 ZN ZN B 401 1555 1555 2.30 LINK O3'A DC C 7 P A6TW C 8 1555 1555 1.56 LINK O3'B DC C 7 P B6TW C 8 1555 1555 1.57 LINK O3'A6TW C 8 P A DT C 9 1555 1555 1.55 LINK O3'B6TW C 8 P B DT C 9 1555 1555 1.53 SITE 1 AC1 5 CYS A 191 CYS A 194 CYS A 213 CYS A 216 SITE 2 AC1 5 ARG A 264 SITE 1 AC2 5 CYS B 191 CYS B 194 CYS B 213 CYS B 216 SITE 2 AC2 5 ARG B 264 CRYST1 53.041 53.041 131.345 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007614 0.00000