PDB Short entry for 5LFZ HEADER HYDROLASE 05-JUL-16 5LFZ TITLE T48 DEACETYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCE4A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DNA SEQUENCE DEPOSITED AT COMPND 6 HTTP://WWW.EBI.AC.UK/ENA/DATA/VIEW/LT630322 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER SP. AW19M34-1; SOURCE 3 ORGANISM_TAXID: 1914985; SOURCE 4 GENE: AA310_02990, ATC04_16800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEACETYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR U.ROTHWEILER REVDAT 6 10-JAN-24 5LFZ 1 REMARK LINK REVDAT 5 16-OCT-19 5LFZ 1 REMARK REVDAT 4 22-NOV-17 5LFZ 1 JRNL REVDAT 3 01-NOV-17 5LFZ 1 SOURCE DBREF SEQADV REVDAT 2 27-SEP-17 5LFZ 1 COMPND REVDAT 1 02-AUG-17 5LFZ 0 JRNL AUTH T.R.TUVENG,U.ROTHWEILER,G.UDATHA,G.VAAJE-KOLSTAD,A.SMALAS, JRNL AUTH 2 V.G.H.EIJSINK JRNL TITL STRUCTURE AND FUNCTION OF A CE4 DEACETYLASE ISOLATED FROM A JRNL TITL 2 MARINE ENVIRONMENT. JRNL REF PLOS ONE V. 12 87544 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 29107991 JRNL DOI 10.1371/JOURNAL.PONE.0187544 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 23405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8513 - 3.6698 1.00 1896 165 0.1613 0.1589 REMARK 3 2 3.6698 - 2.9133 1.00 1811 158 0.1689 0.2099 REMARK 3 3 2.9133 - 2.5452 1.00 1778 156 0.1833 0.2175 REMARK 3 4 2.5452 - 2.3125 1.00 1763 153 0.1684 0.2117 REMARK 3 5 2.3125 - 2.1468 0.99 1747 152 0.1646 0.2109 REMARK 3 6 2.1468 - 2.0202 0.99 1733 153 0.1682 0.2194 REMARK 3 7 2.0202 - 1.9191 0.98 1708 149 0.1865 0.2207 REMARK 3 8 1.9191 - 1.8355 0.96 1673 146 0.1997 0.2339 REMARK 3 9 1.8355 - 1.7649 0.92 1591 136 0.2259 0.2661 REMARK 3 10 1.7649 - 1.7040 0.90 1577 133 0.2472 0.2590 REMARK 3 11 1.7040 - 1.6507 0.87 1510 133 0.2643 0.2879 REMARK 3 12 1.6507 - 1.6035 0.85 1466 129 0.3144 0.3391 REMARK 3 13 1.6035 - 1.5613 0.75 1269 120 0.3705 0.4528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1647 REMARK 3 ANGLE : 0.957 2243 REMARK 3 CHIRALITY : 0.038 251 REMARK 3 PLANARITY : 0.004 289 REMARK 3 DIHEDRAL : 13.450 603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5913 37.3214 22.8758 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.2340 REMARK 3 T33: 0.2450 T12: -0.0362 REMARK 3 T13: 0.0078 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.2708 L22: 0.6362 REMARK 3 L33: 1.9971 L12: -0.5812 REMARK 3 L13: 0.4025 L23: -0.6902 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: 0.0694 S13: 0.1463 REMARK 3 S21: -0.0715 S22: -0.2023 S23: -0.1047 REMARK 3 S31: -0.1373 S32: 0.2732 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1609 26.8113 33.6694 REMARK 3 T TENSOR REMARK 3 T11: 0.2598 T22: 0.2676 REMARK 3 T33: 0.2441 T12: -0.0453 REMARK 3 T13: -0.0017 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.4685 L22: 0.8438 REMARK 3 L33: 2.3209 L12: -0.0082 REMARK 3 L13: -0.2801 L23: -0.3440 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: -0.2646 S13: -0.0202 REMARK 3 S21: 0.1238 S22: 0.0212 S23: 0.0615 REMARK 3 S31: 0.1747 S32: -0.1313 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6083 35.9127 17.7459 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.2148 REMARK 3 T33: 0.2243 T12: -0.0050 REMARK 3 T13: -0.0106 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.2124 L22: 1.0895 REMARK 3 L33: 1.3214 L12: -0.3672 REMARK 3 L13: -0.1544 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.1821 S13: -0.0210 REMARK 3 S21: -0.1576 S22: -0.0658 S23: 0.0745 REMARK 3 S31: 0.0131 S32: -0.1679 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9944 42.6303 23.5654 REMARK 3 T TENSOR REMARK 3 T11: 0.2751 T22: 0.2093 REMARK 3 T33: 0.2654 T12: -0.0178 REMARK 3 T13: -0.0036 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.0599 L22: 1.1525 REMARK 3 L33: 1.3773 L12: 0.2439 REMARK 3 L13: 0.6892 L23: -0.8575 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.0454 S13: 0.1652 REMARK 3 S21: 0.1180 S22: -0.1043 S23: 0.0247 REMARK 3 S31: -0.2645 S32: 0.1220 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.5 15-30% PEG (1.5K; REMARK 280 2K; 3350 OR 4K), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.54500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.54500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 GLN A 32 REMARK 465 PRO A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 VAL A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 PHE A 242 REMARK 465 LYS A 243 REMARK 465 THR A 244 REMARK 465 ASN A 245 REMARK 465 PRO A 246 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 172 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 499 O HOH A 505 2.01 REMARK 500 O HOH A 486 O HOH A 493 2.08 REMARK 500 O HOH A 427 O HOH A 500 2.15 REMARK 500 O HOH A 433 O HOH A 479 2.16 REMARK 500 O HOH A 419 O HOH A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 43 NH1 ARG A 155 4566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 -1.12 85.95 REMARK 500 THR A 106 -177.44 67.74 REMARK 500 LEU A 163 -133.58 -95.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 HIS A 105 NE2 86.8 REMARK 620 3 HIS A 109 NE2 98.3 98.3 REMARK 620 4 HOH A 408 O 92.5 174.6 87.0 REMARK 620 5 HOH A 435 O 110.0 96.8 148.6 78.4 REMARK 620 6 HOH A 477 O 175.5 93.1 86.2 87.1 65.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 301 DBREF 5LFZ A 24 246 PDB 5LFZ 5LFZ 24 246 SEQRES 1 A 223 HIS HIS HIS HIS HIS HIS ALA GLY GLN PRO GLU PRO VAL SEQRES 2 A 223 ALA THR PRO PRO ALA VAL ASP CYS ALA THR THR LYS CYS SEQRES 3 A 223 VAL ALA LEU THR PHE ASP ASP GLY PRO GLY GLU TYR THR SEQRES 4 A 223 ASN ARG LEU LEU ASP GLU LEU SER GLU GLN HIS THR PRO SEQRES 5 A 223 ALA THR PHE PHE VAL LEU GLY LYS ASN VAL LYS LYS TYR SEQRES 6 A 223 PRO LYS THR LEU LYS ARG MET VAL ASP GLU GLY HIS GLN SEQRES 7 A 223 ILE GLY SER HIS THR PHE ASP HIS LYS ASP ILE THR LYS SEQRES 8 A 223 LEU THR ALA GLU GLY ILE GLU HIS GLU VAL GLN TRP THR SEQRES 9 A 223 ASP GLU ALA ILE GLU GLN ALA ALA GLY VAL LYS PRO GLN SEQRES 10 A 223 ILE LEU ARG PRO PRO TYR GLY ALA HIS GLY ALA VAL TYR SEQRES 11 A 223 ASP ARG LEU ILE PRO TYR PRO LEU VAL LEU TRP ASP VAL SEQRES 12 A 223 ASP THR LEU ASP TRP LYS HIS HIS ASP PRO GLN LYS THR SEQRES 13 A 223 VAL ARG ILE ALA LEU GLU GLU ALA LYS PRO GLY SER ILE SEQRES 14 A 223 ILE LEU MET HIS ASP ILE HIS GLU SER SER VAL LYS ALA SEQRES 15 A 223 VAL PRO GLN LEU VAL SER LYS LEU HIS ASP ALA GLY TYR SEQRES 16 A 223 THR LEU VAL THR VAL ASP GLN LEU PHE ALA GLY THR ASP SEQRES 17 A 223 PHE LYS PRO ALA LYS ALA TYR ASP HIS ARG PHE LYS THR SEQRES 18 A 223 ASN PRO HET NI A 301 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ FORMUL 3 HOH *107(H2 O) HELIX 1 AA1 TYR A 61 GLN A 72 1 12 HELIX 2 AA2 LEU A 81 LYS A 86 1 6 HELIX 3 AA3 TYR A 88 GLU A 98 1 11 HELIX 4 AA4 ASP A 111 LEU A 115 5 5 HELIX 5 AA5 THR A 116 GLY A 136 1 21 HELIX 6 AA6 PRO A 144 ALA A 148 5 5 HELIX 7 AA7 GLY A 150 ARG A 155 1 6 HELIX 8 AA8 LEU A 169 HIS A 174 1 6 HELIX 9 AA9 ASP A 175 ALA A 187 1 13 HELIX 10 AB1 HIS A 199 ALA A 216 1 18 HELIX 11 AB2 THR A 222 PHE A 227 1 6 SHEET 1 AA1 5 GLN A 101 SER A 104 0 SHEET 2 AA1 5 THR A 77 VAL A 80 1 N PHE A 78 O GLY A 103 SHEET 3 AA1 5 CYS A 49 ASP A 55 1 N PHE A 54 O THR A 77 SHEET 4 AA1 5 SER A 191 HIS A 196 1 O ILE A 193 N ALA A 51 SHEET 5 AA1 5 VAL A 166 ASP A 167 1 N VAL A 166 O LEU A 194 SHEET 1 AA2 4 GLN A 101 SER A 104 0 SHEET 2 AA2 4 THR A 77 VAL A 80 1 N PHE A 78 O GLY A 103 SHEET 3 AA2 4 CYS A 49 ASP A 55 1 N PHE A 54 O THR A 77 SHEET 4 AA2 4 THR A 219 LEU A 220 1 O THR A 219 N VAL A 50 SHEET 1 AA3 2 LEU A 161 VAL A 162 0 SHEET 2 AA3 2 ALA A 237 TYR A 238 1 O TYR A 238 N LEU A 161 SSBOND 1 CYS A 44 CYS A 49 1555 1555 2.04 LINK OD1 ASP A 56 NI NI A 301 1555 1555 2.06 LINK NE2 HIS A 105 NI NI A 301 1555 1555 2.08 LINK NE2 HIS A 109 NI NI A 301 1555 1555 2.07 LINK NI NI A 301 O HOH A 408 1555 1555 2.09 LINK NI NI A 301 O HOH A 435 1555 1555 1.94 LINK NI NI A 301 O HOH A 477 1555 1555 2.15 CISPEP 1 GLY A 57 PRO A 58 0 -3.31 SITE 1 AC1 6 ASP A 56 HIS A 105 HIS A 109 HOH A 408 SITE 2 AC1 6 HOH A 435 HOH A 477 CRYST1 39.090 56.770 76.860 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025582 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013011 0.00000