PDB Short entry for 5LKD HEADER TRANSFERASE 22-JUL-16 5LKD TITLE CRYSTAL STRUCTURE OF THE XI GLUTATHIONE TRANSFERASE ECM4 FROM TITLE 2 SACCHAROMYCES CEREVISIAE IN COMPLEX WITH GLUTATHIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE OMEGA-LIKE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EXTRACELLULAR MUTANT PROTEIN 4,GLUTATHIONE-DEPENDENT COMPND 5 DEHYDROASCORBATE REDUCTASE; COMPND 6 EC: 2.5.1.18,1.8.5.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: ECM4, GTO2, YKR076W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SACCHAROMYCES CEREVISIAE, GLUTATHIONE TRANSFERASE, GLUTATHIONE, KEYWDS 2 QUINONE, ECM4, YKR076W, GLUTATHIONYL-HYDROQUINONE REDUCTASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHWARTZ,C.DIDIERJEAN,A.HECKER,J.M.GIRARDET,M.MOREL-ROUHIER, AUTHOR 2 E.GELHAYE,F.FAVIER REVDAT 1 26-OCT-16 5LKD 0 JRNL AUTH M.SCHWARTZ,C.DIDIERJEAN,A.HECKER,J.M.GIRARDET, JRNL AUTH 2 M.MOREL-ROUHIER,E.GELHAYE,F.FAVIER JRNL TITL CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ECM4, A JRNL TITL 2 XI-CLASS GLUTATHIONE TRANSFERASE THAT REACTS WITH JRNL TITL 3 GLUTATHIONYL-(HYDRO)QUINONES. JRNL REF PLOS ONE V. 11 64678 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27736955 JRNL DOI 10.1371/JOURNAL.PONE.0164678 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 78008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6014 - 5.1005 0.97 2780 145 0.1647 0.1903 REMARK 3 2 5.1005 - 4.0491 0.96 2732 144 0.1196 0.1385 REMARK 3 3 4.0491 - 3.5375 0.98 2735 144 0.1284 0.1574 REMARK 3 4 3.5375 - 3.2141 0.98 2751 145 0.1467 0.1821 REMARK 3 5 3.2141 - 2.9838 0.98 2746 144 0.1519 0.2142 REMARK 3 6 2.9838 - 2.8079 0.98 2736 144 0.1535 0.1860 REMARK 3 7 2.8079 - 2.6673 0.98 2713 143 0.1556 0.2075 REMARK 3 8 2.6673 - 2.5512 0.98 2735 144 0.1474 0.2010 REMARK 3 9 2.5512 - 2.4530 0.97 2709 143 0.1437 0.1750 REMARK 3 10 2.4530 - 2.3683 0.97 2707 142 0.1390 0.2064 REMARK 3 11 2.3683 - 2.2943 0.97 2675 141 0.1507 0.1889 REMARK 3 12 2.2943 - 2.2287 0.97 2686 141 0.1525 0.2139 REMARK 3 13 2.2287 - 2.1700 0.97 2713 143 0.1628 0.2054 REMARK 3 14 2.1700 - 2.1171 0.97 2689 142 0.1641 0.2012 REMARK 3 15 2.1171 - 2.0690 0.96 2676 140 0.1624 0.2376 REMARK 3 16 2.0690 - 2.0249 0.97 2706 142 0.1732 0.2333 REMARK 3 17 2.0249 - 1.9844 0.96 2659 140 0.1794 0.2406 REMARK 3 18 1.9844 - 1.9470 0.96 2692 141 0.1827 0.2117 REMARK 3 19 1.9470 - 1.9122 0.96 2644 139 0.1871 0.2354 REMARK 3 20 1.9122 - 1.8798 0.96 2702 142 0.1925 0.2485 REMARK 3 21 1.8798 - 1.8495 0.96 2660 141 0.2008 0.2483 REMARK 3 22 1.8495 - 1.8210 0.96 2678 141 0.2113 0.2531 REMARK 3 23 1.8210 - 1.7942 0.96 2602 137 0.2163 0.2641 REMARK 3 24 1.7942 - 1.7690 0.96 2705 142 0.2286 0.2905 REMARK 3 25 1.7690 - 1.7450 0.95 2624 138 0.2486 0.3230 REMARK 3 26 1.7450 - 1.7224 0.93 2573 136 0.2687 0.3368 REMARK 3 27 1.7224 - 1.7009 0.79 2210 116 0.2682 0.3403 REMARK 3 28 1.7009 - 1.6804 0.69 1871 99 0.2871 0.3071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 5938 REMARK 3 ANGLE : 1.456 8052 REMARK 3 CHIRALITY : 0.085 852 REMARK 3 PLANARITY : 0.012 1025 REMARK 3 DIHEDRAL : 13.803 3462 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979767 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 47.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3PPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 2000 MME, 0.1 M TRIS PH REMARK 280 7.0, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.22000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 TRP A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 ASN A 10 REMARK 465 MET A 84 REMARK 465 GLU A 85 REMARK 465 LYS A 86 REMARK 465 GLN A 87 REMARK 465 LEU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 SER A 91 REMARK 465 GLU A 92 REMARK 465 ASP A 93 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLN B 4 REMARK 465 TRP B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 THR B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 PHE B 13 REMARK 465 LYS B 14 REMARK 465 ARG B 15 REMARK 465 MET B 84 REMARK 465 GLU B 85 REMARK 465 LYS B 86 REMARK 465 GLN B 87 REMARK 465 LEU B 88 REMARK 465 GLU B 89 REMARK 465 ASP B 90 REMARK 465 SER B 91 REMARK 465 GLU B 92 REMARK 465 ASP B 93 REMARK 465 PHE B 94 REMARK 465 LYS B 109 REMARK 465 GLU B 110 REMARK 465 ASP B 111 REMARK 465 SER B 112 REMARK 465 SER B 113 REMARK 465 LYS B 114 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 14 CG CD CE NZ REMARK 480 GLN A 16 CG CD OE1 NE2 REMARK 480 GLN A 27 CG CD OE1 NE2 REMARK 480 LYS A 35 CG CD CE NZ REMARK 480 GLU A 76 CG CD OE1 OE2 REMARK 480 LYS A 77 CE NZ REMARK 480 LEU A 95 CG CD1 CD2 REMARK 480 GLU A 96 CG CD OE1 OE2 REMARK 480 LYS A 109 CG CD CE NZ REMARK 480 LYS A 114 CG CD CE NZ REMARK 480 GLU A 118 CG CD OE1 OE2 REMARK 480 LYS A 139 CE NZ REMARK 480 LYS A 147 CD CE NZ REMARK 480 ARG A 155 NE CZ NH1 NH2 REMARK 480 ASP A 191 CB CG OD1 OD2 REMARK 480 ASP A 192 CG OD1 OD2 REMARK 480 LYS A 195 CG CD CE NZ REMARK 480 LYS A 196 CG CD CE NZ REMARK 480 GLN A 203 CG CD OE1 NE2 REMARK 480 LYS A 231 CG CD CE NZ REMARK 480 LYS A 259 CG CD CE NZ REMARK 480 LYS A 261 CG CD CE NZ REMARK 480 GLU A 266 CB CG CD OE1 OE2 REMARK 480 GLU A 267 CB CG CD OE1 OE2 REMARK 480 ARG A 269 CG CD NE CZ REMARK 480 GLN A 270 CG CD OE1 NE2 REMARK 480 LYS A 271 CG CD CE NZ REMARK 480 GLN B 16 CG CD OE1 NE2 REMARK 480 LYS B 26 CG CD CE NZ REMARK 480 GLU B 76 CG CD OE1 OE2 REMARK 480 LYS B 77 CE NZ REMARK 480 GLU B 118 CG CD OE1 OE2 REMARK 480 LYS B 120 CD CE NZ REMARK 480 LYS B 139 CE NZ REMARK 480 LYS B 195 CD CE NZ REMARK 480 LYS B 196 CG CD CE NZ REMARK 480 LYS B 205 CD CE NZ REMARK 480 LYS B 231 CG CD CE NZ REMARK 480 LYS B 259 CG CD CE NZ REMARK 480 LYS B 261 CD CE NZ REMARK 480 GLU B 266 CB CG CD OE1 OE2 REMARK 480 GLU B 267 CG CD OE1 OE2 REMARK 480 ARG B 269 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 270 CG CD OE1 NE2 REMARK 480 LYS B 271 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 248 O HOH A 501 1.43 REMARK 500 HE21 GLN B 282 O HOH B 504 1.53 REMARK 500 HH TYR B 216 O HOH B 502 1.56 REMARK 500 HZ2 LYS B 256 O GLY B 280 1.60 REMARK 500 O HOH A 814 O HOH A 816 1.97 REMARK 500 O HOH A 740 O HOH A 743 1.99 REMARK 500 O HOH B 547 O HOH B 627 2.00 REMARK 500 O HOH B 701 O HOH B 745 2.01 REMARK 500 O HOH B 534 O HOH B 672 2.05 REMARK 500 O HOH A 815 O HOH A 816 2.05 REMARK 500 O HOH B 797 O HOH B 800 2.10 REMARK 500 O HOH A 691 O HOH A 784 2.15 REMARK 500 O HOH B 709 O HOH B 748 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 300 CB VAL B 300 CG2 -0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 106 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 179 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 114 -153.91 -123.90 REMARK 500 VAL A 128 -56.66 -121.42 REMARK 500 SER A 153 38.65 -143.06 REMARK 500 ALA A 154 -166.22 -116.18 REMARK 500 ILE A 219 -62.18 -125.34 REMARK 500 ASP A 268 67.66 -103.32 REMARK 500 VAL A 300 -52.13 -130.54 REMARK 500 VAL B 128 -54.94 -125.06 REMARK 500 ILE B 219 -62.47 -122.93 REMARK 500 VAL B 300 -46.45 -140.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 812 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 813 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 814 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 815 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B 818 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 819 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 820 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 821 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 822 DISTANCE = 6.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH B 401 DBREF 5LKD A 1 370 UNP P36156 GTO2_YEAST 1 370 DBREF 5LKD B 1 370 UNP P36156 GTO2_YEAST 1 370 SEQADV 5LKD LEU A 371 UNP P36156 EXPRESSION TAG SEQADV 5LKD GLU A 372 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS A 373 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS A 374 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS A 375 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS A 376 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS A 377 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS A 378 UNP P36156 EXPRESSION TAG SEQADV 5LKD LEU B 371 UNP P36156 EXPRESSION TAG SEQADV 5LKD GLU B 372 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS B 373 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS B 374 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS B 375 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS B 376 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS B 377 UNP P36156 EXPRESSION TAG SEQADV 5LKD HIS B 378 UNP P36156 EXPRESSION TAG SEQRES 1 A 378 MET SER LYS GLN TRP ALA SER GLY THR ASN GLY ALA PHE SEQRES 2 A 378 LYS ARG GLN VAL SER SER PHE ARG GLU THR ILE SER LYS SEQRES 3 A 378 GLN HIS PRO ILE TYR LYS PRO ALA LYS GLY ARG TYR TRP SEQRES 4 A 378 LEU TYR VAL SER LEU ALA CYS PRO TRP ALA HIS ARG THR SEQRES 5 A 378 LEU ILE THR ARG ALA LEU LYS GLY LEU THR SER VAL ILE SEQRES 6 A 378 GLY CYS SER VAL VAL HIS TRP HIS LEU ASP GLU LYS GLY SEQRES 7 A 378 TRP ARG PHE LEU ASP MET GLU LYS GLN LEU GLU ASP SER SEQRES 8 A 378 GLU ASP PHE LEU GLU HIS TRP HIS ASP VAL ALA GLY GLY SEQRES 9 A 378 ILE ARG THR ALA LYS GLU ASP SER SER LYS SER PHE ALA SEQRES 10 A 378 GLU ILE LYS ASN ASP SER GLN ARG PHE MET VAL ASP ALA SEQRES 11 A 378 THR ASN GLU PRO HIS TYR GLY TYR LYS ARG ILE SER ASP SEQRES 12 A 378 LEU TYR TYR LYS SER ASP PRO GLN TYR SER ALA ARG PHE SEQRES 13 A 378 THR VAL PRO VAL LEU TRP ASP LEU GLU THR GLN THR ILE SEQRES 14 A 378 VAL ASN ASN GLU SER SER GLU ILE ILE ARG ILE LEU ASN SEQRES 15 A 378 SER SER ALA PHE ASP GLU PHE VAL ASP ASP ASP HIS LYS SEQRES 16 A 378 LYS THR ASP LEU VAL PRO ALA GLN LEU LYS THR GLN ILE SEQRES 17 A 378 ASP ASP PHE ASN SER TRP VAL TYR ASP SER ILE ASN ASN SEQRES 18 A 378 GLY VAL TYR LYS THR GLY PHE ALA GLU LYS ALA GLU VAL SEQRES 19 A 378 TYR GLU SER GLU VAL ASN ASN VAL PHE GLU HIS LEU ASP SEQRES 20 A 378 LYS VAL GLU LYS ILE LEU SER ASP LYS TYR SER LYS LEU SEQRES 21 A 378 LYS ALA LYS TYR GLY GLU GLU ASP ARG GLN LYS ILE LEU SEQRES 22 A 378 GLY GLU PHE PHE THR VAL GLY ASP GLN LEU THR GLU ALA SEQRES 23 A 378 ASP ILE ARG LEU TYR THR THR VAL ILE ARG PHE ASP PRO SEQRES 24 A 378 VAL TYR VAL GLN HIS PHE LYS CYS ASN PHE THR SER ILE SEQRES 25 A 378 ARG ALA GLY TYR PRO PHE ILE HIS LEU TRP VAL ARG ASN SEQRES 26 A 378 LEU TYR TRP ASN TYR ASP ALA PHE ARG TYR THR THR ASP SEQRES 27 A 378 PHE ASP HIS ILE LYS LEU HIS TYR THR ARG SER HIS THR SEQRES 28 A 378 ARG ILE ASN PRO LEU GLY ILE THR PRO LEU GLY PRO LYS SEQRES 29 A 378 PRO ASP ILE ARG PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 30 A 378 HIS SEQRES 1 B 378 MET SER LYS GLN TRP ALA SER GLY THR ASN GLY ALA PHE SEQRES 2 B 378 LYS ARG GLN VAL SER SER PHE ARG GLU THR ILE SER LYS SEQRES 3 B 378 GLN HIS PRO ILE TYR LYS PRO ALA LYS GLY ARG TYR TRP SEQRES 4 B 378 LEU TYR VAL SER LEU ALA CYS PRO TRP ALA HIS ARG THR SEQRES 5 B 378 LEU ILE THR ARG ALA LEU LYS GLY LEU THR SER VAL ILE SEQRES 6 B 378 GLY CYS SER VAL VAL HIS TRP HIS LEU ASP GLU LYS GLY SEQRES 7 B 378 TRP ARG PHE LEU ASP MET GLU LYS GLN LEU GLU ASP SER SEQRES 8 B 378 GLU ASP PHE LEU GLU HIS TRP HIS ASP VAL ALA GLY GLY SEQRES 9 B 378 ILE ARG THR ALA LYS GLU ASP SER SER LYS SER PHE ALA SEQRES 10 B 378 GLU ILE LYS ASN ASP SER GLN ARG PHE MET VAL ASP ALA SEQRES 11 B 378 THR ASN GLU PRO HIS TYR GLY TYR LYS ARG ILE SER ASP SEQRES 12 B 378 LEU TYR TYR LYS SER ASP PRO GLN TYR SER ALA ARG PHE SEQRES 13 B 378 THR VAL PRO VAL LEU TRP ASP LEU GLU THR GLN THR ILE SEQRES 14 B 378 VAL ASN ASN GLU SER SER GLU ILE ILE ARG ILE LEU ASN SEQRES 15 B 378 SER SER ALA PHE ASP GLU PHE VAL ASP ASP ASP HIS LYS SEQRES 16 B 378 LYS THR ASP LEU VAL PRO ALA GLN LEU LYS THR GLN ILE SEQRES 17 B 378 ASP ASP PHE ASN SER TRP VAL TYR ASP SER ILE ASN ASN SEQRES 18 B 378 GLY VAL TYR LYS THR GLY PHE ALA GLU LYS ALA GLU VAL SEQRES 19 B 378 TYR GLU SER GLU VAL ASN ASN VAL PHE GLU HIS LEU ASP SEQRES 20 B 378 LYS VAL GLU LYS ILE LEU SER ASP LYS TYR SER LYS LEU SEQRES 21 B 378 LYS ALA LYS TYR GLY GLU GLU ASP ARG GLN LYS ILE LEU SEQRES 22 B 378 GLY GLU PHE PHE THR VAL GLY ASP GLN LEU THR GLU ALA SEQRES 23 B 378 ASP ILE ARG LEU TYR THR THR VAL ILE ARG PHE ASP PRO SEQRES 24 B 378 VAL TYR VAL GLN HIS PHE LYS CYS ASN PHE THR SER ILE SEQRES 25 B 378 ARG ALA GLY TYR PRO PHE ILE HIS LEU TRP VAL ARG ASN SEQRES 26 B 378 LEU TYR TRP ASN TYR ASP ALA PHE ARG TYR THR THR ASP SEQRES 27 B 378 PHE ASP HIS ILE LYS LEU HIS TYR THR ARG SER HIS THR SEQRES 28 B 378 ARG ILE ASN PRO LEU GLY ILE THR PRO LEU GLY PRO LYS SEQRES 29 B 378 PRO ASP ILE ARG PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 30 B 378 HIS HET GSH A 401 34 HET GSH B 401 34 HETNAM GSH GLUTATHIONE FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 5 HOH *638(H2 O) HELIX 1 AA1 CYS A 46 LYS A 59 1 14 HELIX 2 AA2 LEU A 95 HIS A 99 1 5 HELIX 3 AA3 ILE A 105 GLU A 110 5 6 HELIX 4 AA4 ARG A 140 ASP A 149 1 10 HELIX 5 AA5 GLU A 173 SER A 183 1 11 HELIX 6 AA6 PHE A 186 VAL A 190 5 5 HELIX 7 AA7 ASP A 191 THR A 197 1 7 HELIX 8 AA8 PRO A 201 GLN A 203 5 3 HELIX 9 AA9 LEU A 204 ILE A 219 1 16 HELIX 10 AB1 ASN A 221 PHE A 228 1 8 HELIX 11 AB2 LYS A 231 GLY A 265 1 35 HELIX 12 AB3 ASP A 268 GLY A 274 1 7 HELIX 13 AB4 THR A 284 ASP A 298 1 15 HELIX 14 AB5 VAL A 300 PHE A 305 1 6 HELIX 15 AB6 SER A 311 TYR A 316 1 6 HELIX 16 AB7 TYR A 316 TYR A 330 1 15 HELIX 17 AB8 TYR A 330 TYR A 335 1 6 HELIX 18 AB9 ASP A 338 HIS A 350 1 13 HELIX 19 AC1 CYS B 46 LYS B 59 1 14 HELIX 20 AC2 ARG B 140 ASP B 149 1 10 HELIX 21 AC3 GLU B 173 SER B 183 1 11 HELIX 22 AC4 PHE B 186 VAL B 190 5 5 HELIX 23 AC5 ASP B 191 THR B 197 1 7 HELIX 24 AC6 PRO B 201 GLN B 203 5 3 HELIX 25 AC7 LEU B 204 ILE B 219 1 16 HELIX 26 AC8 ASN B 221 PHE B 228 1 8 HELIX 27 AC9 LYS B 231 GLY B 265 1 35 HELIX 28 AD1 ASP B 268 GLY B 274 1 7 HELIX 29 AD2 THR B 284 ASP B 298 1 15 HELIX 30 AD3 VAL B 300 PHE B 305 1 6 HELIX 31 AD4 SER B 311 TYR B 316 1 6 HELIX 32 AD5 TYR B 316 TYR B 330 1 15 HELIX 33 AD6 TYR B 330 TYR B 335 1 6 HELIX 34 AD7 ASP B 338 HIS B 350 1 13 SHEET 1 AA1 4 GLY A 66 VAL A 69 0 SHEET 2 AA1 4 TYR A 38 VAL A 42 1 N LEU A 40 O GLY A 66 SHEET 3 AA1 4 VAL A 160 ASP A 163 -1 O VAL A 160 N TYR A 41 SHEET 4 AA1 4 THR A 168 ASN A 171 -1 O THR A 168 N ASP A 163 SHEET 1 AA2 4 GLY B 66 VAL B 69 0 SHEET 2 AA2 4 TYR B 38 VAL B 42 1 N LEU B 40 O GLY B 66 SHEET 3 AA2 4 VAL B 160 ASP B 163 -1 O TRP B 162 N TRP B 39 SHEET 4 AA2 4 THR B 168 ASN B 171 -1 O THR B 168 N ASP B 163 SSBOND 1 CYS B 46 GSH B 401 1555 1555 2.17 CISPEP 1 VAL A 158 PRO A 159 0 1.21 CISPEP 2 GLY A 362 PRO A 363 0 -3.60 CISPEP 3 LYS A 364 PRO A 365 0 -7.53 CISPEP 4 VAL B 158 PRO B 159 0 2.76 CISPEP 5 GLY B 362 PRO B 363 0 -0.51 CISPEP 6 LYS B 364 PRO B 365 0 -8.11 SITE 1 AC1 13 ARG A 15 CYS A 46 TRP A 48 TRP A 79 SITE 2 AC1 13 ARG A 155 THR A 157 VAL A 158 PRO A 159 SITE 3 AC1 13 ASN A 172 GLU A 173 SER A 174 HOH A 510 SITE 4 AC1 13 HOH A 546 SITE 1 AC2 14 SER B 18 CYS B 46 TRP B 48 TRP B 79 SITE 2 AC2 14 ARG B 155 THR B 157 VAL B 158 PRO B 159 SITE 3 AC2 14 ASN B 172 GLU B 173 SER B 174 HOH B 517 SITE 4 AC2 14 HOH B 523 HOH B 551 CRYST1 55.440 82.440 80.580 90.00 95.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018038 0.000000 0.001678 0.00000 SCALE2 0.000000 0.012130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012464 0.00000