PDB Short entry for 5LM4 HEADER TRANSPORT PROTEIN 29-JUL-16 5LM4 TITLE STRUCTURE OF THE THERMOSTALILIZED EAAT1 CRYST-II MUTANT IN COMPLEX TITLE 2 WITH L-ASP AND THE ALLOSTERIC INHIBITOR UCPH101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCITATORY AMINO ACID TRANSPORTER 1,NEUTRAL AMINO ACID COMPND 3 TRANSPORTER B(0),EXCITATORY AMINO ACID TRANSPORTER 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 1-149,UNP RESIDUES 158-230,UNP RESIDUES 243- COMPND 6 542; COMPND 7 SYNONYM: SODIUM-DEPENDENT GLUTAMATE/ASPARTATE TRANSPORTER 1,GLAST-1, COMPND 8 SOLUTE CARRIER FAMILY 1 MEMBER 3,ATB(0),BABOON M7 VIRUS RECEPTOR, COMPND 9 RD114/SIMIAN TYPE D RETROVIRUS RECEPTOR,SODIUM-DEPENDENT NEUTRAL COMPND 10 AMINO ACID TRANSPORTER TYPE 2,SOLUTE CARRIER FAMILY 1 MEMBER 5, COMPND 11 SODIUM-DEPENDENT GLUTAMATE/ASPARTATE TRANSPORTER 1,GLAST-1,SOLUTE COMPND 12 CARRIER FAMILY 1 MEMBER 3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC1A3, EAAT1, GLAST, GLAST1, SLC1A5, ASCT2, M7V1, RDR, RDRC; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK-293F; SOURCE 10 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1573; SOURCE 11 EXPRESSION_SYSTEM_TISSUE: EMBRIONIC KIDNEY; SOURCE 12 EXPRESSION_SYSTEM_CELL: EMBRIONIC; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PCDNA3 KEYWDS EXCITATORY AMINO ACID TRANSPORTER 1, HUMAN GLUTAMATE TRANSPORTER, KEYWDS 2 SLC1A3, UCPH101, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.CANUL-TEC,R.ASSAL,P.LEGRAND,N.REYES REVDAT 4 10-JAN-24 5LM4 1 REMARK REVDAT 3 10-MAY-17 5LM4 1 JRNL REVDAT 2 03-MAY-17 5LM4 1 JRNL REVDAT 1 19-APR-17 5LM4 0 JRNL AUTH J.C.CANUL-TEC,R.ASSAL,E.CIRRI,P.LEGRAND,S.BRIER, JRNL AUTH 2 J.CHAMOT-ROOKE,N.REYES JRNL TITL STRUCTURE AND ALLOSTERIC INHIBITION OF EXCITATORY AMINO ACID JRNL TITL 2 TRANSPORTER 1. JRNL REF NATURE V. 544 446 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28424515 JRNL DOI 10.1038/NATURE22064 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.9 REMARK 3 NUMBER OF REFLECTIONS : 10725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 528 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 31.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1260 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1975 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1196 REMARK 3 BIN R VALUE (WORKING SET) : 0.1951 REMARK 3 BIN FREE R VALUE : 0.2419 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.08 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 64 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 121.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.86490 REMARK 3 B22 (A**2) : 4.86490 REMARK 3 B33 (A**2) : -9.72980 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.444 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.779 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3037 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4127 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1038 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 50 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 465 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3037 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 425 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3874 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.14 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -468.1330 289.3662 4.3020 REMARK 3 T TENSOR REMARK 3 T11: -0.3258 T22: 0.1270 REMARK 3 T33: -0.3757 T12: -0.0982 REMARK 3 T13: -0.0199 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 2.7422 L22: 2.1312 REMARK 3 L33: 3.6344 L12: 0.0453 REMARK 3 L13: -0.0679 L23: 0.1110 REMARK 3 S TENSOR REMARK 3 S11: -0.1130 S12: 0.1016 S13: 0.2185 REMARK 3 S21: -0.0234 S22: -0.0348 S23: -0.6523 REMARK 3 S31: -0.2443 S32: 1.0947 S33: 0.1478 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 - 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAY 1, 2016 REMARK 200 BUILT=20160517 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION MAY 1, 2016 REMARK 200 BUILT=20160517 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14115 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : 6.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 2NWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 400, 100 MM TRIS PH 8.2, 50 MM REMARK 280 CALCIUM CHLORIDE, 50 MM BARIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.81000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.81000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 MET A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 PHE A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 ARG A 25 REMARK 465 THR A 26 REMARK 465 LEU A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 LYS A 31 REMARK 465 LYS A 32 REMARK 465 VAL A 33 REMARK 465 GLN A 34 REMARK 465 ASN A 35 REMARK 465 ILE A 36 REMARK 465 THR A 37 REMARK 465 LYS A 38 REMARK 465 HIS A 146 REMARK 465 PRO A 147 REMARK 465 GLY A 148 REMARK 465 ALA A 149 REMARK 465 ALA A 150 REMARK 465 SER A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 153 REMARK 465 ILE A 154 REMARK 465 THR A 155 REMARK 465 ALA A 156 REMARK 465 SER A 157 REMARK 465 VAL A 158 REMARK 465 GLY A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 GLY A 162 REMARK 465 SER A 163 REMARK 465 ALA A 164 REMARK 465 GLU A 165 REMARK 465 ASN A 166 REMARK 465 ALA A 167 REMARK 465 PRO A 168 REMARK 465 SER A 169 REMARK 465 LYS A 170 REMARK 465 THR A 199 REMARK 465 TYR A 200 REMARK 465 GLU A 201 REMARK 465 GLU A 202 REMARK 465 ARG A 203 REMARK 465 THR A 204 REMARK 465 ILE A 205 REMARK 465 THR A 206 REMARK 465 GLY A 207 REMARK 465 THR A 208 REMARK 465 ARG A 209 REMARK 465 VAL A 210 REMARK 465 LYS A 211 REMARK 465 VAL A 212 REMARK 465 PRO A 213 REMARK 465 VAL A 214 REMARK 465 GLY A 215 REMARK 465 MET A 284 REMARK 465 GLU A 285 REMARK 465 ASP A 286 REMARK 465 LEU A 287 REMARK 465 GLU A 288 REMARK 465 VAL A 289 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 GLY A 292 REMARK 465 GLN A 293 REMARK 465 LEU A 294 REMARK 465 VAL A 396 REMARK 465 ASN A 397 REMARK 465 ASN A 398 REMARK 465 TYR A 399 REMARK 465 GLU A 400 REMARK 465 LEU A 401 REMARK 465 ALA A 487 REMARK 465 GLU A 488 REMARK 465 LEU A 489 REMARK 465 GLY A 490 REMARK 465 ASN A 491 REMARK 465 SER A 492 REMARK 465 VAL A 493 REMARK 465 ILE A 494 REMARK 465 GLU A 495 REMARK 465 GLU A 496 REMARK 465 ASN A 497 REMARK 465 GLU A 498 REMARK 465 MET A 499 REMARK 465 LYS A 500 REMARK 465 LYS A 501 REMARK 465 PRO A 502 REMARK 465 TYR A 503 REMARK 465 GLN A 504 REMARK 465 LEU A 505 REMARK 465 ILE A 506 REMARK 465 ALA A 507 REMARK 465 GLN A 508 REMARK 465 ASP A 509 REMARK 465 ASN A 510 REMARK 465 GLU A 511 REMARK 465 THR A 512 REMARK 465 GLU A 513 REMARK 465 LYS A 514 REMARK 465 PRO A 515 REMARK 465 ILE A 516 REMARK 465 ASP A 517 REMARK 465 SER A 518 REMARK 465 GLU A 519 REMARK 465 THR A 520 REMARK 465 LYS A 521 REMARK 465 MET A 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 121 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 47 OE1 GLU A 77 40105 1.75 REMARK 500 NH2 ARG A 90 O ARG A 181 3-355 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 48 31.69 -88.65 REMARK 500 LEU A 73 -128.54 62.77 REMARK 500 PHE A 193 1.74 -154.67 REMARK 500 VAL A 282 79.83 -106.62 REMARK 500 ILE A 311 -53.24 -123.83 REMARK 500 GLU A 358 -86.21 -93.07 REMARK 500 ILE A 449 -54.21 -19.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 376 O REMARK 620 2 SER A 417 O 139.6 REMARK 620 3 ILE A 418 O 84.7 94.0 REMARK 620 4 ALA A 420 O 92.3 125.4 110.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ASP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6Z6 A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5LLM RELATED DB: PDB REMARK 900 5LLM CONTAINS A MUTANT OF THE EAAT1 COMPLEXED WITH UCPH-101 DBREF 5LM4 A 1 149 UNP P43003 EAA1_HUMAN 1 149 DBREF 5LM4 A 150 222 UNP Q15758 AAAT_HUMAN 158 230 DBREF 5LM4 A 223 522 UNP P43003 EAA1_HUMAN 243 542 SEQADV 5LM4 SER A 23 UNP P43003 ARG 23 ENGINEERED MUTATION SEQADV 5LM4 PHE A 44 UNP P43003 TYR 44 ENGINEERED MUTATION SEQADV 5LM4 ARG A 46 UNP P43003 PHE 46 ENGINEERED MUTATION SEQADV 5LM4 LEU A 50 UNP P43003 PHE 50 ENGINEERED MUTATION SEQADV 5LM4 LEU A 51 UNP P43003 VAL 51 ENGINEERED MUTATION SEQADV 5LM4 LEU A 56 UNP P43003 THR 56 ENGINEERED MUTATION SEQADV 5LM4 LEU A 60 UNP P43003 VAL 60 ENGINEERED MUTATION SEQADV 5LM4 VAL A 62 UNP P43003 THR 62 ENGINEERED MUTATION SEQADV 5LM4 VAL A 63 UNP P43003 ILE 63 ENGINEERED MUTATION SEQADV 5LM4 LEU A 67 UNP P43003 THR 67 ENGINEERED MUTATION SEQADV 5LM4 PRO A 72 UNP P43003 ARG 72 ENGINEERED MUTATION SEQADV 5LM4 LEU A 73 UNP P43003 MET 73 ENGINEERED MUTATION SEQADV 5LM4 PRO A 75 UNP P43003 TYR 75 ENGINEERED MUTATION SEQADV 5LM4 ALA A 82 UNP P43003 SER 82 ENGINEERED MUTATION SEQADV 5LM4 LYS A 93 UNP P43003 GLN 93 ENGINEERED MUTATION SEQADV 5LM4 ILE A 96 UNP P43003 VAL 96 ENGINEERED MUTATION SEQADV 5LM4 VAL A 101 UNP P43003 ILE 101 ENGINEERED MUTATION SEQADV 5LM4 ILE A 105 UNP P43003 VAL 105 ENGINEERED MUTATION SEQADV 5LM4 LEU A 108 UNP P43003 MET 108 ENGINEERED MUTATION SEQADV 5LM4 SER A 110 UNP P43003 ALA 110 ENGINEERED MUTATION SEQADV 5LM4 ALA A 113 UNP P43003 SER 113 ENGINEERED MUTATION SEQADV 5LM4 ARG A 118 UNP P43003 LYS 118 ENGINEERED MUTATION SEQADV 5LM4 LEU A 119 UNP P43003 MET 119 ENGINEERED MUTATION SEQADV 5LM4 SER A 129 UNP P43003 THR 129 ENGINEERED MUTATION SEQADV 5LM4 LEU A 137 UNP P43003 ILE 137 ENGINEERED MUTATION SEQADV 5LM4 LEU A 141 UNP P43003 ILE 141 ENGINEERED MUTATION SEQADV 5LM4 LEU A 143 UNP P43003 ILE 143 ENGINEERED MUTATION SEQADV 5LM4 ALA A 149 UNP P43003 LYS 149 ENGINEERED MUTATION SEQADV 5LM4 THR A 155 UNP Q15758 ASN 163 ENGINEERED MUTATION SEQADV 5LM4 CYS A 175 UNP Q15758 SER 183 ENGINEERED MUTATION SEQADV 5LM4 THR A 204 UNP Q15758 ASN 212 ENGINEERED MUTATION SEQADV 5LM4 ILE A 223 UNP P43003 ALA 243 ENGINEERED MUTATION SEQADV 5LM4 ILE A 231 UNP P43003 MET 251 ENGINEERED MUTATION SEQADV 5LM4 VAL A 232 UNP P43003 CYS 252 ENGINEERED MUTATION SEQADV 5LM4 ILE A 235 UNP P43003 PHE 255 ENGINEERED MUTATION SEQADV 5LM4 ALA A 236 UNP P43003 VAL 256 ENGINEERED MUTATION SEQADV 5LM4 LEU A 237 UNP P43003 ILE 257 ENGINEERED MUTATION SEQADV 5LM4 LYS A 239 UNP P43003 ASN 259 ENGINEERED MUTATION SEQADV 5LM4 GLY A 241 UNP P43003 LYS 261 ENGINEERED MUTATION SEQADV 5LM4 LEU A 246 UNP P43003 ALA 266 ENGINEERED MUTATION SEQADV 5LM4 VAL A 248 UNP P43003 ARG 268 ENGINEERED MUTATION SEQADV 5LM4 ASP A 249 UNP P43003 GLU 269 ENGINEERED MUTATION SEQADV 5LM4 ASN A 252 UNP P43003 ASP 272 ENGINEERED MUTATION SEQADV 5LM4 THR A 258 UNP P43003 ILE 278 ENGINEERED MUTATION SEQADV 5LM4 LYS A 260 UNP P43003 ARG 280 ENGINEERED MUTATION SEQADV 5LM4 ILE A 264 UNP P43003 VAL 284 ENGINEERED MUTATION SEQADV 5LM4 LEU A 271 UNP P43003 VAL 291 ENGINEERED MUTATION SEQADV 5LM4 LEU A 287 UNP P43003 MET 307 ENGINEERED MUTATION SEQADV 5LM4 GLU A 288 UNP P43003 GLY 308 ENGINEERED MUTATION SEQADV 5LM4 LEU A 290 UNP P43003 ILE 310 ENGINEERED MUTATION SEQADV 5LM4 GLY A 295 UNP P43003 ALA 315 ENGINEERED MUTATION SEQADV 5LM4 MET A 298 UNP P43003 THR 318 ENGINEERED MUTATION SEQADV 5LM4 VAL A 306 UNP P43003 LEU 326 ENGINEERED MUTATION SEQADV 5LM4 GLY A 309 UNP P43003 ALA 329 ENGINEERED MUTATION SEQADV 5LM4 LEU A 310 UNP P43003 VAL 330 ENGINEERED MUTATION SEQADV 5LM4 ILE A 316 UNP P43003 LEU 336 ENGINEERED MUTATION SEQADV 5LM4 ILE A 320 UNP P43003 VAL 340 ENGINEERED MUTATION SEQADV 5LM4 PHE A 326 UNP P43003 TRP 346 ENGINEERED MUTATION SEQADV 5LM4 ALA A 330 UNP P43003 GLY 350 ENGINEERED MUTATION SEQADV 5LM4 ILE A 332 UNP P43003 LEU 352 ENGINEERED MUTATION SEQADV 5LM4 ILE A 366 UNP P43003 VAL 386 ENGINEERED MUTATION SEQADV 5LM4 VAL A 388 UNP P43003 LEU 408 ENGINEERED MUTATION SEQADV 5LM4 TYR A 399 UNP P43003 PHE 419 ENGINEERED MUTATION SEQADV 5LM4 ASP A 402 UNP P43003 ASN 422 ENGINEERED MUTATION SEQADV 5LM4 ALA A 437 UNP P43003 SER 457 ENGINEERED MUTATION SEQADV 5LM4 LEU A 454 UNP P43003 PHE 474 ENGINEERED MUTATION SEQADV 5LM4 PHE A 458 UNP P43003 LEU 478 ENGINEERED MUTATION SEQADV 5LM4 MET A 461 UNP P43003 THR 481 ENGINEERED MUTATION SEQADV 5LM4 VAL A 462 UNP P43003 THR 482 ENGINEERED MUTATION SEQADV 5LM4 ALA A 468 UNP P43003 SER 488 ENGINEERED MUTATION SEQADV 5LM4 LYS A 480 UNP P43003 HIS 500 ENGINEERED MUTATION SEQADV 5LM4 GLU A 483 UNP P43003 LYS 503 ENGINEERED MUTATION SEQADV 5LM4 LYS A 484 UNP P43003 ASN 504 ENGINEERED MUTATION SEQADV 5LM4 GLN A 485 UNP P43003 ARG 505 ENGINEERED MUTATION SEQADV 5LM4 ALA A 487 UNP P43003 VAL 507 ENGINEERED MUTATION SEQADV 5LM4 LEU A 489 UNP P43003 MET 509 ENGINEERED MUTATION SEQRES 1 A 522 MET THR LYS SER ASN GLY GLU GLU PRO LYS MET GLY GLY SEQRES 2 A 522 ARG MET GLU ARG PHE GLN GLN GLY VAL SER LYS ARG THR SEQRES 3 A 522 LEU LEU ALA LYS LYS LYS VAL GLN ASN ILE THR LYS GLU SEQRES 4 A 522 ASP VAL LYS SER PHE LEU ARG ARG ASN ALA LEU LEU LEU SEQRES 5 A 522 LEU THR VAL LEU ALA VAL ILE LEU GLY VAL VAL LEU GLY SEQRES 6 A 522 PHE LEU LEU ARG PRO TYR PRO LEU SER PRO ARG GLU VAL SEQRES 7 A 522 LYS TYR PHE ALA PHE PRO GLY GLU LEU LEU MET ARG MET SEQRES 8 A 522 LEU LYS MET LEU ILE LEU PRO LEU ILE VAL SER SER LEU SEQRES 9 A 522 ILE THR GLY LEU ALA SER LEU ASP ALA LYS ALA SER GLY SEQRES 10 A 522 ARG LEU GLY MET ARG ALA VAL VAL TYR TYR MET SER THR SEQRES 11 A 522 THR ILE ILE ALA VAL VAL LEU GLY ILE ILE LEU VAL LEU SEQRES 12 A 522 ILE ILE HIS PRO GLY ALA ALA SER ALA ALA ILE THR ALA SEQRES 13 A 522 SER VAL GLY ALA ALA GLY SER ALA GLU ASN ALA PRO SER SEQRES 14 A 522 LYS GLU VAL LEU ASP CYS PHE LEU ASP LEU ALA ARG ASN SEQRES 15 A 522 ILE PHE PRO SER ASN LEU VAL SER ALA ALA PHE ARG SER SEQRES 16 A 522 TYR SER THR THR TYR GLU GLU ARG THR ILE THR GLY THR SEQRES 17 A 522 ARG VAL LYS VAL PRO VAL GLY GLN GLU VAL GLU GLY MET SEQRES 18 A 522 ASN ILE LEU GLY LEU VAL VAL PHE SER ILE VAL PHE GLY SEQRES 19 A 522 ILE ALA LEU GLY LYS MET GLY GLU GLN GLY GLN LEU LEU SEQRES 20 A 522 VAL ASP PHE PHE ASN SER LEU ASN GLU ALA THR MET LYS SEQRES 21 A 522 LEU VAL ALA ILE ILE MET TRP TYR ALA PRO LEU GLY ILE SEQRES 22 A 522 LEU PHE LEU ILE ALA GLY LYS ILE VAL GLU MET GLU ASP SEQRES 23 A 522 LEU GLU VAL LEU GLY GLY GLN LEU GLY MET TYR MET VAL SEQRES 24 A 522 THR VAL ILE VAL GLY LEU VAL ILE HIS GLY LEU ILE VAL SEQRES 25 A 522 LEU PRO LEU ILE TYR PHE LEU ILE THR ARG LYS ASN PRO SEQRES 26 A 522 PHE VAL PHE ILE ALA GLY ILE LEU GLN ALA LEU ILE THR SEQRES 27 A 522 ALA LEU GLY THR SER SER SER SER ALA THR LEU PRO ILE SEQRES 28 A 522 THR PHE LYS CYS LEU GLU GLU ASN ASN GLY VAL ASP LYS SEQRES 29 A 522 ARG ILE THR ARG PHE VAL LEU PRO VAL GLY ALA THR ILE SEQRES 30 A 522 ASN MET ASP GLY THR ALA LEU TYR GLU ALA VAL ALA ALA SEQRES 31 A 522 ILE PHE ILE ALA GLN VAL ASN ASN TYR GLU LEU ASP PHE SEQRES 32 A 522 GLY GLN ILE ILE THR ILE SER ILE THR ALA THR ALA ALA SEQRES 33 A 522 SER ILE GLY ALA ALA GLY ILE PRO GLN ALA GLY LEU VAL SEQRES 34 A 522 THR MET VAL ILE VAL LEU THR ALA VAL GLY LEU PRO THR SEQRES 35 A 522 ASP ASP ILE THR LEU ILE ILE ALA VAL ASP TRP LEU LEU SEQRES 36 A 522 ASP ARG PHE ARG THR MET VAL ASN VAL LEU GLY ASP ALA SEQRES 37 A 522 LEU GLY ALA GLY ILE VAL GLU HIS LEU SER ARG LYS GLU SEQRES 38 A 522 LEU GLU LYS GLN ASP ALA GLU LEU GLY ASN SER VAL ILE SEQRES 39 A 522 GLU GLU ASN GLU MET LYS LYS PRO TYR GLN LEU ILE ALA SEQRES 40 A 522 GLN ASP ASN GLU THR GLU LYS PRO ILE ASP SER GLU THR SEQRES 41 A 522 LYS MET HET NA A 601 1 HET ASP A 602 9 HET 6Z6 A 603 32 HETNAM NA SODIUM ION HETNAM ASP ASPARTIC ACID HETNAM 6Z6 2-AMINO-5,6,7,8-TETRAHYDRO-4-(4-METHOXYPHENYL)-7- HETNAM 2 6Z6 (NAPHTHALEN-1-YL)-5-OXO-4H-CHROMENE-3-CARBONITRILE FORMUL 2 NA NA 1+ FORMUL 3 ASP C4 H7 N O4 FORMUL 4 6Z6 C27 H22 N2 O3 HELIX 1 AA1 ASP A 40 ASN A 48 1 9 HELIX 2 AA2 ASN A 48 ARG A 69 1 22 HELIX 3 AA3 SER A 74 ALA A 82 1 9 HELIX 4 AA4 ALA A 82 SER A 110 1 29 HELIX 5 AA5 ASP A 112 LEU A 143 1 32 HELIX 6 AA6 VAL A 172 PHE A 184 1 13 HELIX 7 AA7 ASN A 187 ALA A 192 1 6 HELIX 8 AA8 ASN A 222 LYS A 239 1 18 HELIX 9 AA9 MET A 240 ILE A 281 1 42 HELIX 10 AB1 MET A 296 ILE A 311 1 16 HELIX 11 AB2 ILE A 311 ARG A 322 1 12 HELIX 12 AB3 ASN A 324 ILE A 332 1 9 HELIX 13 AB4 ILE A 332 SER A 343 1 12 HELIX 14 AB5 THR A 348 GLU A 358 1 11 HELIX 15 AB6 ASP A 363 ILE A 377 1 15 HELIX 16 AB7 MET A 379 GLN A 395 1 17 HELIX 17 AB8 PHE A 403 ALA A 420 1 18 HELIX 18 AB9 GLN A 425 THR A 430 1 6 HELIX 19 AC1 THR A 430 GLY A 439 1 10 HELIX 20 AC2 PRO A 441 ASP A 443 5 3 HELIX 21 AC3 ASP A 444 SER A 478 1 35 HELIX 22 AC4 SER A 478 GLN A 485 1 8 SHEET 1 AA1 2 ARG A 194 TYR A 196 0 SHEET 2 AA1 2 GLU A 217 GLU A 219 -1 O VAL A 218 N SER A 195 LINK O THR A 376 NA NA A 601 1555 1555 2.24 LINK O SER A 417 NA NA A 601 1555 1555 2.24 LINK O ILE A 418 NA NA A 601 1555 1555 2.64 LINK O ALA A 420 NA NA A 601 1555 1555 2.24 SITE 1 AC1 5 THR A 376 MET A 379 SER A 417 ILE A 418 SITE 2 AC1 5 ALA A 420 SITE 1 AC2 14 SER A 343 SER A 344 SER A 345 THR A 382 SITE 2 AC2 14 ALA A 421 GLY A 422 ILE A 423 PRO A 424 SITE 3 AC2 14 ALA A 426 GLY A 427 ASP A 456 ARG A 459 SITE 4 AC2 14 THR A 460 ASN A 463 SITE 1 AC3 12 ALA A 113 SER A 116 GLY A 117 GLY A 120 SITE 2 AC3 12 ALA A 123 VAL A 124 TYR A 127 ILE A 231 SITE 3 AC3 12 ILE A 235 PHE A 369 VAL A 373 ILE A 377 CRYST1 123.110 123.110 89.620 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008123 0.004690 0.000000 0.00000 SCALE2 0.000000 0.009379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011158 0.00000