PDB Short entry for 5LPE HEADER HYDROLASE 12-AUG-16 5LPE TITLE KALLIKREIN-RELATED PEPTIDASE 10 COMPLEX WITH ZN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALLIKREIN-10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 43-276; COMPND 5 SYNONYM: NORMAL EPITHELIAL CELL-SPECIFIC 1,PROTEASE SERINE-LIKE 1; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLK10, NES1, PRSSL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, ZYMOGEN-LIKE ENZYME, ZN2+ INHIBITION, TUMOR KEYWDS 2 SUPPRESSOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GOETTIG,M.DEBELA,V.MAGDOLEN,W.BODE,H.BRANDSTETTER REVDAT 5 10-JAN-24 5LPE 1 REMARK REVDAT 4 20-FEB-19 5LPE 1 REMARK LINK REVDAT 3 06-SEP-17 5LPE 1 REMARK REVDAT 2 16-NOV-16 5LPE 1 JRNL REVDAT 1 05-OCT-16 5LPE 0 JRNL AUTH M.DEBELA,V.MAGDOLEN,W.BODE,H.BRANDSTETTER,P.GOETTIG JRNL TITL STRUCTURAL BASIS FOR THE ZN2+ INHIBITION OF THE ZYMOGEN-LIKE JRNL TITL 2 KALLIKREIN-RELATED PEPTIDASE 10. JRNL REF BIOL.CHEM. V. 397 1251 2016 JRNL REFN ISSN 1431-6730 JRNL PMID 27611765 JRNL DOI 10.1515/HSZ-2016-0205 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 11317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5710 - 5.7058 0.94 1062 53 0.2348 0.2538 REMARK 3 2 5.7058 - 4.5304 0.97 1084 46 0.1895 0.2421 REMARK 3 3 4.5304 - 3.9582 0.98 1078 52 0.1921 0.2624 REMARK 3 4 3.9582 - 3.5965 0.99 1081 57 0.2087 0.2592 REMARK 3 5 3.5965 - 3.3388 0.99 1065 80 0.2153 0.2947 REMARK 3 6 3.3388 - 3.1420 0.99 1065 66 0.2234 0.2856 REMARK 3 7 3.1420 - 2.9847 1.00 1084 59 0.2441 0.3085 REMARK 3 8 2.9847 - 2.8548 0.99 1048 71 0.2497 0.3004 REMARK 3 9 2.8548 - 2.7449 1.00 1083 57 0.2661 0.2964 REMARK 3 10 2.7449 - 2.6502 1.00 1074 52 0.2809 0.3838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3234 REMARK 3 ANGLE : 1.433 4403 REMARK 3 CHIRALITY : 0.065 479 REMARK 3 PLANARITY : 0.008 561 REMARK 3 DIHEDRAL : 24.731 1196 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : QUARTZ MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11339 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 55.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.975 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 2BDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM AMMONIUM SULPHATE, 100 MM MES, REMARK 280 PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.51850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 13 REMARK 465 ASP A 14 REMARK 465 PRO A 15 REMARK 465 GLU A 16 REMARK 465 ALA A 17 REMARK 465 TYR A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ASP A 72 REMARK 465 HIS A 73 REMARK 465 LEU A 74 REMARK 465 LEU A 75 REMARK 465 LEU A 76 REMARK 465 LEU A 77 REMARK 465 HIS A 94A REMARK 465 GLN A 94B REMARK 465 GLY A 94C REMARK 465 SER A 94D REMARK 465 GLY A 94E REMARK 465 PRO A 94F REMARK 465 ILE A 94G REMARK 465 LEU A 94H REMARK 465 PRO A 94I REMARK 465 ARG A 94J REMARK 465 ALA A 146 REMARK 465 ARG A 147 REMARK 465 ARG A 148 REMARK 465 VAL A 149 REMARK 465 LYS A 150 REMARK 465 TYR A 151 REMARK 465 LEU B 13 REMARK 465 ASP B 14 REMARK 465 PRO B 15 REMARK 465 GLU B 16 REMARK 465 ALA B 17 REMARK 465 TYR B 18 REMARK 465 GLY B 19 REMARK 465 ASP B 71 REMARK 465 ASP B 72 REMARK 465 HIS B 73 REMARK 465 LEU B 74 REMARK 465 LEU B 75 REMARK 465 LEU B 76 REMARK 465 LEU B 77 REMARK 465 GLY B 95B REMARK 465 SER B 95C REMARK 465 GLY B 95D REMARK 465 PRO B 95E REMARK 465 ILE B 95F REMARK 465 LEU B 95G REMARK 465 PRO B 95H REMARK 465 ARG B 95I REMARK 465 ALA B 145 REMARK 465 ALA B 146 REMARK 465 ARG B 147 REMARK 465 ARG B 148 REMARK 465 VAL B 149 REMARK 465 LYS B 150 REMARK 465 TYR B 151 REMARK 465 ASN B 152 REMARK 465 LYS B 153 REMARK 465 GLY B 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 201 OG1 THR A 208 2.08 REMARK 500 NH2 ARG B 66 OE2 GLU B 80 2.15 REMARK 500 O HOH B 436 O HOH B 439 2.16 REMARK 500 OG SER B 20 NE2 GLN B 188 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OXT ASN A 245 NE2 GLN B 49 1656 1.39 REMARK 500 O LEU A 185 NH2 ARG B 84 2455 1.99 REMARK 500 CB ASN A 245 NE2 GLN B 49 1656 2.04 REMARK 500 C ASN A 245 NE2 GLN B 49 1656 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 22 80.80 60.38 REMARK 500 HIS A 41 -64.04 -127.68 REMARK 500 LYS A 61 156.51 69.73 REMARK 500 THR A 86 -74.09 -115.70 REMARK 500 THR A 144 31.58 72.01 REMARK 500 LYS A 153 -141.39 51.53 REMARK 500 PRO A 165 47.64 -69.28 REMARK 500 LYS A 166 -61.69 -138.62 REMARK 500 THR A 177 -92.01 -95.44 REMARK 500 ASN A 178 -50.10 59.30 REMARK 500 ASP A 194 -114.57 -111.93 REMARK 500 SER A 214 -64.27 -100.92 REMARK 500 ARG A 243 -2.46 61.92 REMARK 500 SER A 244 6.28 -62.77 REMARK 500 GLN B 27 65.61 -119.77 REMARK 500 HIS B 41 -59.65 -120.65 REMARK 500 CYS B 58 21.94 -75.35 REMARK 500 ASN B 60 -77.99 -79.25 REMARK 500 LYS B 61 -172.80 -176.93 REMARK 500 GLU B 80 -65.70 -133.53 REMARK 500 GLN B 81 87.85 59.93 REMARK 500 THR B 86 -76.03 -107.95 REMARK 500 TRP B 141 -79.04 -105.31 REMARK 500 THR B 177 -82.10 -80.96 REMARK 500 ASN B 178 -101.39 48.00 REMARK 500 ASP B 186 -170.14 62.05 REMARK 500 ARG B 186A 72.31 33.13 REMARK 500 ASP B 202 -132.16 59.34 REMARK 500 HIS B 224 129.35 175.06 REMARK 500 ARG B 243 -140.47 67.99 REMARK 500 SER B 244 -2.07 -59.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 467 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 468 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 469 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 470 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 471 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 472 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B 452 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 ND1 REMARK 620 2 ASP A 99 OD2 131.1 REMARK 620 3 ASP A 102 OD2 104.5 124.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 57 ND1 REMARK 620 2 ASP B 99 OD2 128.3 REMARK 620 3 ASP B 102 OD2 83.7 128.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 304 DBREF 5LPE A 13 245 UNP O43240 KLK10_HUMAN 43 276 DBREF 5LPE B 13 245 UNP O43240 KLK10_HUMAN 43 276 SEQRES 1 A 234 LEU ASP PRO GLU ALA TYR GLY SER PRO CYS ALA ARG GLY SEQRES 2 A 234 SER GLN PRO TRP GLN VAL SER LEU PHE ASN GLY LEU SER SEQRES 3 A 234 PHE HIS CYS ALA GLY VAL LEU VAL ASP GLN SER TRP VAL SEQRES 4 A 234 LEU THR ALA ALA HIS CYS GLY ASN LYS PRO LEU TRP ALA SEQRES 5 A 234 ARG VAL GLY ASP ASP HIS LEU LEU LEU LEU GLN GLY GLU SEQRES 6 A 234 GLN LEU ARG ARG THR THR ARG SER VAL VAL HIS PRO LYS SEQRES 7 A 234 TYR HIS GLN GLY SER GLY PRO ILE LEU PRO ARG ARG THR SEQRES 8 A 234 ASP GLU HIS ASP LEU MET LEU LEU LYS LEU ALA ARG PRO SEQRES 9 A 234 VAL VAL LEU GLY PRO ARG VAL ARG ALA LEU GLN LEU PRO SEQRES 10 A 234 TYR ARG CYS ALA GLN PRO GLY ASP GLN CYS GLN VAL ALA SEQRES 11 A 234 GLY TRP GLY THR THR ALA ALA ARG ARG VAL LYS TYR ASN SEQRES 12 A 234 LYS GLY LEU THR CYS SER SER ILE THR ILE LEU SER PRO SEQRES 13 A 234 LYS GLU CYS GLU VAL PHE TYR PRO GLY VAL VAL THR ASN SEQRES 14 A 234 ASN MET ILE CYS ALA GLY LEU ASP ARG GLY GLN ASP PRO SEQRES 15 A 234 CYS GLN SER ASP SER GLY GLY PRO LEU VAL CYS ASP GLU SEQRES 16 A 234 THR LEU GLN GLY ILE LEU SER TRP GLY VAL TYR PRO CYS SEQRES 17 A 234 GLY SER ALA GLN HIS PRO ALA VAL TYR THR GLN ILE CYS SEQRES 18 A 234 LYS TYR MET SER TRP ILE ASN LYS VAL ILE ARG SER ASN SEQRES 1 B 234 LEU ASP PRO GLU ALA TYR GLY SER PRO CYS ALA ARG GLY SEQRES 2 B 234 SER GLN PRO TRP GLN VAL SER LEU PHE ASN GLY LEU SER SEQRES 3 B 234 PHE HIS CYS ALA GLY VAL LEU VAL ASP GLN SER TRP VAL SEQRES 4 B 234 LEU THR ALA ALA HIS CYS GLY ASN LYS PRO LEU TRP ALA SEQRES 5 B 234 ARG VAL GLY ASP ASP HIS LEU LEU LEU LEU GLN GLY GLU SEQRES 6 B 234 GLN LEU ARG ARG THR THR ARG SER VAL VAL HIS PRO LYS SEQRES 7 B 234 TYR HIS GLN GLY SER GLY PRO ILE LEU PRO ARG ARG THR SEQRES 8 B 234 ASP GLU HIS ASP LEU MET LEU LEU LYS LEU ALA ARG PRO SEQRES 9 B 234 VAL VAL LEU GLY PRO ARG VAL ARG ALA LEU GLN LEU PRO SEQRES 10 B 234 TYR ARG CYS ALA GLN PRO GLY ASP GLN CYS GLN VAL ALA SEQRES 11 B 234 GLY TRP GLY THR THR ALA ALA ARG ARG VAL LYS TYR ASN SEQRES 12 B 234 LYS GLY LEU THR CYS SER SER ILE THR ILE LEU SER PRO SEQRES 13 B 234 LYS GLU CYS GLU VAL PHE TYR PRO GLY VAL VAL THR ASN SEQRES 14 B 234 ASN MET ILE CYS ALA GLY LEU ASP ARG GLY GLN ASP PRO SEQRES 15 B 234 CYS GLN SER ASP SER GLY GLY PRO LEU VAL CYS ASP GLU SEQRES 16 B 234 THR LEU GLN GLY ILE LEU SER TRP GLY VAL TYR PRO CYS SEQRES 17 B 234 GLY SER ALA GLN HIS PRO ALA VAL TYR THR GLN ILE CYS SEQRES 18 B 234 LYS TYR MET SER TRP ILE ASN LYS VAL ILE ARG SER ASN HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET ZN A 304 1 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET ZN B 304 1 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 ZN 2(ZN 2+) FORMUL 11 HOH *124(H2 O) HELIX 1 AA1 ALA A 55 GLY A 59 5 5 HELIX 2 AA2 GLU A 167 TYR A 172 1 6 HELIX 3 AA3 ASP A 189 SER A 193 5 5 HELIX 4 AA4 TYR A 234 ILE A 242 1 9 HELIX 5 AA5 SER B 164 TYR B 172 1 9 HELIX 6 AA6 ASP B 189 SER B 193 5 5 HELIX 7 AA7 TYR B 234 ARG B 243 1 10 SHEET 1 AA1 7 GLN A 30 ASN A 35 0 SHEET 2 AA1 7 SER A 39 ASP A 48 -1 O CYS A 42 N LEU A 33 SHEET 3 AA1 7 TRP A 51 THR A 54 -1 O LEU A 53 N VAL A 45 SHEET 4 AA1 7 MET A 104 LEU A 108 -1 O LEU A 106 N VAL A 52 SHEET 5 AA1 7 GLN A 81 VAL A 90 -1 N ARG A 87 O LYS A 107 SHEET 6 AA1 7 TRP A 64 VAL A 67 -1 N VAL A 67 O GLN A 81 SHEET 7 AA1 7 GLN A 30 ASN A 35 -1 N PHE A 34 O TRP A 64 SHEET 1 AA2 7 GLN A 135 GLY A 140 0 SHEET 2 AA2 7 THR A 156 ILE A 162 -1 O ILE A 160 N CYS A 136 SHEET 3 AA2 7 MET A 180 LEU A 185 -1 O GLY A 184 N THR A 161 SHEET 4 AA2 7 ALA A 226 GLN A 230 -1 O TYR A 228 N ILE A 181 SHEET 5 AA2 7 THR A 208 TRP A 215 -1 N TRP A 215 O VAL A 227 SHEET 6 AA2 7 PRO A 198 CYS A 201 -1 N LEU A 199 O GLY A 211 SHEET 7 AA2 7 GLN A 135 GLY A 140 -1 N GLN A 137 O VAL A 200 SHEET 1 AA3 7 GLN B 30 ASN B 35 0 SHEET 2 AA3 7 SER B 39 ASP B 48 -1 O CYS B 42 N LEU B 33 SHEET 3 AA3 7 TRP B 51 THR B 54 -1 O LEU B 53 N VAL B 45 SHEET 4 AA3 7 MET B 104 LEU B 108 -1 O LEU B 106 N VAL B 52 SHEET 5 AA3 7 LEU B 82 VAL B 90 -1 N THR B 86 O LYS B 107 SHEET 6 AA3 7 TRP B 64 VAL B 67 -1 N ALA B 65 O ARG B 83 SHEET 7 AA3 7 GLN B 30 ASN B 35 -1 N PHE B 34 O TRP B 64 SHEET 1 AA4 7 GLN B 135 GLY B 140 0 SHEET 2 AA4 7 THR B 156 ILE B 162 -1 O ILE B 160 N CYS B 136 SHEET 3 AA4 7 MET B 180 GLY B 184 -1 O GLY B 184 N THR B 161 SHEET 4 AA4 7 ALA B 226 GLN B 230 -1 O TYR B 228 N ILE B 181 SHEET 5 AA4 7 THR B 208 TRP B 215 -1 N ILE B 212 O THR B 229 SHEET 6 AA4 7 PRO B 198 CYS B 201 -1 N LEU B 199 O GLY B 211 SHEET 7 AA4 7 GLN B 135 GLY B 140 -1 N GLN B 137 O VAL B 200 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.02 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.00 SSBOND 3 CYS A 129 CYS A 232 1555 1555 2.05 SSBOND 4 CYS A 136 CYS A 201 1555 1555 2.02 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.00 SSBOND 6 CYS A 191 CYS A 220 1555 1555 2.03 SSBOND 7 CYS B 22 CYS B 157 1555 1555 2.03 SSBOND 8 CYS B 42 CYS B 58 1555 1555 2.02 SSBOND 9 CYS B 129 CYS B 232 1555 1555 2.04 SSBOND 10 CYS B 136 CYS B 201 1555 1555 2.02 SSBOND 11 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 12 CYS B 191 CYS B 220 1555 1555 2.01 LINK ND1 HIS A 57 ZN ZN A 304 1555 1555 2.10 LINK OD2 ASP A 99 ZN ZN A 304 1555 1555 1.86 LINK OD2 ASP A 102 ZN ZN A 304 1555 1555 2.06 LINK ND1 HIS B 57 ZN ZN B 304 1555 1555 2.09 LINK OD2 ASP B 99 ZN ZN B 304 1555 1555 1.97 LINK OD2 ASP B 102 ZN ZN B 304 1555 1555 2.03 CISPEP 1 LYS A 61 PRO A 62 0 -4.38 CISPEP 2 TYR A 218 PRO A 219 0 0.85 CISPEP 3 LYS B 61 PRO B 62 0 -12.44 CISPEP 4 TYR B 218 PRO B 219 0 0.81 SITE 1 AC1 5 TRP A 215 GLY A 216 VAL A 217 TYR A 218 SITE 2 AC1 5 ARG B 97 SITE 1 AC2 5 ARG A 186A GLY A 187 SER A 222 ALA A 223 SITE 2 AC2 5 GLN A 223A SITE 1 AC3 4 GLN A 230 LYS A 233 HOH A 402 HOH A 403 SITE 1 AC4 4 HIS A 57 ASP A 99 ASP A 102 SER A 214 SITE 1 AC5 4 TRP B 215 GLY B 216 VAL B 217 TYR B 218 SITE 1 AC6 3 ALA B 130 GLN B 131 LYS B 233 SITE 1 AC7 5 GLN B 81 ARG B 83 ARG B 110 VAL B 113 SITE 2 AC7 5 HOH B 403 SITE 1 AC8 4 HIS B 57 ASP B 99 ASP B 102 SER B 214 CRYST1 52.914 67.037 57.768 90.00 104.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018899 0.000000 0.004841 0.00000 SCALE2 0.000000 0.014917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017870 0.00000