PDB Short entry for 5LPF HEADER HYDROLASE 12-AUG-16 5LPF TITLE KALLIKREIN-RELATED PEPTIDASE 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALLIKREIN-10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 43-276; COMPND 5 SYNONYM: NORMAL EPITHELIAL CELL-SPECIFIC 1,PROTEASE SERINE-LIKE 1; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLK10, NES1, PRSSL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, ZYMOGEN-LIKE ENZYME, ZN2+ INHIBITION, TUMOR KEYWDS 2 SUPPRESSOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GOETTIG,M.DEBELA,V.MAGDOLEN,W.BODE,H.BRANDSTETTER REVDAT 4 10-JAN-24 5LPF 1 REMARK REVDAT 3 06-SEP-17 5LPF 1 REMARK REVDAT 2 16-NOV-16 5LPF 1 JRNL REVDAT 1 05-OCT-16 5LPF 0 JRNL AUTH M.DEBELA,V.MAGDOLEN,W.BODE,H.BRANDSTETTER,P.GOETTIG JRNL TITL STRUCTURAL BASIS FOR THE ZN2+ INHIBITION OF THE ZYMOGEN-LIKE JRNL TITL 2 KALLIKREIN-RELATED PEPTIDASE 10. JRNL REF BIOL.CHEM. V. 397 1251 2016 JRNL REFN ISSN 1431-6730 JRNL PMID 27611765 JRNL DOI 10.1515/HSZ-2016-0205 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 10400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.650 REMARK 3 FREE R VALUE TEST SET COUNT : 588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6969 - 5.8103 0.99 1048 66 0.2210 0.2354 REMARK 3 2 5.8103 - 4.6147 1.00 1071 49 0.1891 0.2514 REMARK 3 3 4.6147 - 4.0322 1.00 1027 72 0.1699 0.2025 REMARK 3 4 4.0322 - 3.6639 0.85 814 44 0.2322 0.3452 REMARK 3 5 3.6639 - 3.4015 0.80 783 46 0.2348 0.2910 REMARK 3 6 3.4015 - 3.2010 1.00 1056 48 0.2315 0.3113 REMARK 3 7 3.2010 - 3.0408 1.00 1026 65 0.2424 0.3101 REMARK 3 8 3.0408 - 2.9085 1.00 1017 74 0.2748 0.3723 REMARK 3 9 2.9085 - 2.7966 1.00 1049 63 0.2882 0.3947 REMARK 3 10 2.7966 - 2.7001 0.91 921 61 0.2819 0.3523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3221 REMARK 3 ANGLE : 1.128 4392 REMARK 3 CHIRALITY : 0.060 478 REMARK 3 PLANARITY : 0.007 559 REMARK 3 DIHEDRAL : 24.619 1189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 21:23 OR RESSEQ REMARK 3 25:33 OR (RESID 34 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CE1 OR NAME CZ OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 35:36 OR RESSEQ 38:59 OR RESSEQ 61: REMARK 3 63 OR RESSEQ 65 OR RESSEQ 67 OR (RESID 69 REMARK 3 AND (NAME N OR NAME CA OR NAME C )) OR REMARK 3 (RESID 70 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG OR NAME OD1)) OR RESSEQ 81: REMARK 3 94 OR (RESID 99 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME CG OR NAME OD2 OR NAME C REMARK 3 OR NAME O )) OR RESSEQ 100:116 OR RESSEQ REMARK 3 118:124 OR (RESID 125 AND (NAME N OR NAME REMARK 3 CA OR NAME CB OR NAME CG OR NAME CD2 OR REMARK 3 NAME CE2 OR NAME CZ OR NAME OH OR NAME C REMARK 3 OR NAME O )) OR RESSEQ 129:133 OR (RESID REMARK 3 134 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG OR NAME OD1 OR NAME C OR NAME O )) REMARK 3 OR RESSEQ 135:142 OR (RESID 155 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME CG REMARK 3 OR NAME CD1 OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 156:166 OR RESSEQ 168:174 OR REMARK 3 (RESID 175 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG1 OR NAME C OR NAME O )) OR REMARK 3 (RESID 176 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG1 OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 177 OR RESSEQ 179:185 OR (RESID REMARK 3 186 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG OR NAME OD1 OR NAME C OR NAME O )) REMARK 3 OR RESSEQ 187:188 OR (RESID 189 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME CG REMARK 3 OR NAME OD2 OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 190:201 OR (RESID 202 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 OD2 OR NAME C OR NAME O )) OR RESSEQ 208: REMARK 3 222 OR RESID 223 OR RESSEQ 224:244)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 21:23 OR RESSEQ REMARK 3 25:33 OR (RESID 34 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CE1 OR NAME CZ OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 35:36 OR RESSEQ 38:59 OR RESSEQ 61: REMARK 3 63 OR RESSEQ 65 OR RESSEQ 67 OR (RESID 68 REMARK 3 AND (NAME O OR NAME N OR NAME CA )) OR REMARK 3 (RESID 70 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG OR NAME OD1)) OR RESSEQ 81: REMARK 3 94 OR (RESID 99 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME CG OR NAME OD2 OR NAME C REMARK 3 OR NAME O )) OR RESSEQ 100:116 OR RESSEQ REMARK 3 118:124 OR (RESID 125 AND (NAME N OR NAME REMARK 3 CA OR NAME CB OR NAME CG OR NAME CD2 OR REMARK 3 NAME CE2 OR NAME CZ OR NAME OH OR NAME C REMARK 3 OR NAME O )) OR RESSEQ 129:133 OR (RESID REMARK 3 134 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG OR NAME OD1 OR NAME C OR NAME O )) REMARK 3 OR RESSEQ 135:142 OR (RESID 155 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME CG REMARK 3 OR NAME CD1 OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 156:166 OR RESSEQ 168:174 OR REMARK 3 (RESID 175 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG1 OR NAME C OR NAME O )) OR REMARK 3 (RESID 176 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG1 OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 177 OR RESSEQ 179:185 OR (RESID REMARK 3 186 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG OR NAME OD1 OR NAME C OR NAME O )) REMARK 3 OR RESSEQ 187:188 OR (RESID 189 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME CG REMARK 3 OR NAME OD2 OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 190:201 OR (RESID 202 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 OD2 OR NAME C OR NAME O )) OR RESSEQ 208: REMARK 3 222 OR RESID 223 OR RESSEQ 224:244)) REMARK 3 ATOM PAIRS NUMBER : 1486 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : QUARTZ MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10481 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 51.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.989 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 2BDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM SULPHATE, 0.1 M MES, PH REMARK 280 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.42050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 13 REMARK 465 ASP A 14 REMARK 465 PRO A 15 REMARK 465 GLU A 16 REMARK 465 ALA A 17 REMARK 465 TYR A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ASP A 72 REMARK 465 HIS A 73 REMARK 465 LEU A 74 REMARK 465 LEU A 75 REMARK 465 LEU A 76 REMARK 465 LEU A 77 REMARK 465 HIS A 94A REMARK 465 GLN A 94B REMARK 465 GLY A 94C REMARK 465 SER A 94D REMARK 465 GLY A 94E REMARK 465 PRO A 94F REMARK 465 ILE A 94G REMARK 465 LEU A 94H REMARK 465 PRO A 94I REMARK 465 ARG A 94J REMARK 465 ARG A 94K REMARK 465 ALA A 146 REMARK 465 ARG A 147 REMARK 465 ARG A 148 REMARK 465 VAL A 149 REMARK 465 LYS A 150 REMARK 465 TYR A 151 REMARK 465 LEU B 13 REMARK 465 ASP B 14 REMARK 465 PRO B 15 REMARK 465 GLU B 16 REMARK 465 ALA B 17 REMARK 465 TYR B 18 REMARK 465 GLY B 19 REMARK 465 ASP B 72 REMARK 465 HIS B 73 REMARK 465 LEU B 74 REMARK 465 LEU B 75 REMARK 465 LEU B 76 REMARK 465 LEU B 77 REMARK 465 GLN B 78 REMARK 465 GLY B 95B REMARK 465 SER B 95C REMARK 465 GLY B 95D REMARK 465 PRO B 95E REMARK 465 ILE B 95F REMARK 465 LEU B 95G REMARK 465 PRO B 95H REMARK 465 ARG B 95I REMARK 465 ALA B 145 REMARK 465 ALA B 146 REMARK 465 ARG B 147 REMARK 465 ARG B 148 REMARK 465 VAL B 149 REMARK 465 LYS B 150 REMARK 465 TYR B 151 REMARK 465 ASN B 152 REMARK 465 LYS B 153 REMARK 465 GLY B 154 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 60 CB CG OD1 ND2 REMARK 480 ARG A 66 CD NE CZ NH1 NH2 REMARK 480 GLU A 100 CB CG CD OE1 OE2 REMARK 480 LEU A 114 CG CD1 CD2 REMARK 480 LYS A 153 CG CD CE NZ REMARK 480 LYS A 166 CB CG CD CE NZ REMARK 480 GLN A 192 CB CG CD OE1 NE2 REMARK 480 LYS A 240 CG CD CE NZ REMARK 480 ASN B 60 CB CG OD1 ND2 REMARK 480 LYS B 61 CB CG CD CE NZ REMARK 480 LYS B 93 CD CE NZ REMARK 480 HIS B 95 CB CG ND1 CD2 CE1 NE2 REMARK 480 THR B 98 CB OG1 CG2 REMARK 480 VAL B 113 CB CG1 CG2 REMARK 480 ARG B 117 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 166 CD CE NZ REMARK 480 ASP B 189 CG OD1 OD2 REMARK 480 LYS B 240 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 230 O1 SO4 A 303 1.82 REMARK 500 NH2 ARG B 83 O1 SO4 B 303 2.05 REMARK 500 O2 SO4 A 301 O HOH A 401 2.13 REMARK 500 ND2 ASN B 239 O HOH B 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OXT ASN A 245 NE2 GLN B 49 1656 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 100 CB GLU A 100 CG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 82 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 CYS B 157 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 22 84.17 62.08 REMARK 500 LYS A 61 154.41 65.64 REMARK 500 GLU A 80 -72.53 -72.94 REMARK 500 THR A 86 -75.67 -106.54 REMARK 500 THR A 144 75.87 65.91 REMARK 500 PRO A 165 46.34 -72.38 REMARK 500 LYS A 166 -54.06 -135.15 REMARK 500 ASN A 178 -136.70 53.95 REMARK 500 SER A 214 -64.47 -101.64 REMARK 500 LYS B 61 153.69 68.12 REMARK 500 THR B 86 -78.33 -111.63 REMARK 500 HIS B 101 71.56 49.59 REMARK 500 ARG B 128 -102.06 -125.63 REMARK 500 TRP B 141 -75.44 -96.25 REMARK 500 ASN B 178 -26.30 73.06 REMARK 500 ASP B 186 -157.35 65.65 REMARK 500 ASP B 202 -128.23 59.99 REMARK 500 SER B 214 -65.50 -98.59 REMARK 500 SER B 222 161.16 174.30 REMARK 500 ARG B 243 75.89 53.68 REMARK 500 SER B 244 -11.99 86.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 59 ASN A 60 145.56 REMARK 500 THR A 143 THR A 144 -149.70 REMARK 500 THR A 177 ASN A 178 143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 466 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 467 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 468 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH B 463 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 464 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 465 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 466 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B 467 DISTANCE = 7.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF 5LPF A 13 245 UNP O43240 KLK10_HUMAN 43 276 DBREF 5LPF B 13 245 UNP O43240 KLK10_HUMAN 43 276 SEQRES 1 A 234 LEU ASP PRO GLU ALA TYR GLY SER PRO CYS ALA ARG GLY SEQRES 2 A 234 SER GLN PRO TRP GLN VAL SER LEU PHE ASN GLY LEU SER SEQRES 3 A 234 PHE HIS CYS ALA GLY VAL LEU VAL ASP GLN SER TRP VAL SEQRES 4 A 234 LEU THR ALA ALA HIS CYS GLY ASN LYS PRO LEU TRP ALA SEQRES 5 A 234 ARG VAL GLY ASP ASP HIS LEU LEU LEU LEU GLN GLY GLU SEQRES 6 A 234 GLN LEU ARG ARG THR THR ARG SER VAL VAL HIS PRO LYS SEQRES 7 A 234 TYR HIS GLN GLY SER GLY PRO ILE LEU PRO ARG ARG THR SEQRES 8 A 234 ASP GLU HIS ASP LEU MET LEU LEU LYS LEU ALA ARG PRO SEQRES 9 A 234 VAL VAL LEU GLY PRO ARG VAL ARG ALA LEU GLN LEU PRO SEQRES 10 A 234 TYR ARG CYS ALA GLN PRO GLY ASP GLN CYS GLN VAL ALA SEQRES 11 A 234 GLY TRP GLY THR THR ALA ALA ARG ARG VAL LYS TYR ASN SEQRES 12 A 234 LYS GLY LEU THR CYS SER SER ILE THR ILE LEU SER PRO SEQRES 13 A 234 LYS GLU CYS GLU VAL PHE TYR PRO GLY VAL VAL THR ASN SEQRES 14 A 234 ASN MET ILE CYS ALA GLY LEU ASP ARG GLY GLN ASP PRO SEQRES 15 A 234 CYS GLN SER ASP SER GLY GLY PRO LEU VAL CYS ASP GLU SEQRES 16 A 234 THR LEU GLN GLY ILE LEU SER TRP GLY VAL TYR PRO CYS SEQRES 17 A 234 GLY SER ALA GLN HIS PRO ALA VAL TYR THR GLN ILE CYS SEQRES 18 A 234 LYS TYR MET SER TRP ILE ASN LYS VAL ILE ARG SER ASN SEQRES 1 B 234 LEU ASP PRO GLU ALA TYR GLY SER PRO CYS ALA ARG GLY SEQRES 2 B 234 SER GLN PRO TRP GLN VAL SER LEU PHE ASN GLY LEU SER SEQRES 3 B 234 PHE HIS CYS ALA GLY VAL LEU VAL ASP GLN SER TRP VAL SEQRES 4 B 234 LEU THR ALA ALA HIS CYS GLY ASN LYS PRO LEU TRP ALA SEQRES 5 B 234 ARG VAL GLY ASP ASP HIS LEU LEU LEU LEU GLN GLY GLU SEQRES 6 B 234 GLN LEU ARG ARG THR THR ARG SER VAL VAL HIS PRO LYS SEQRES 7 B 234 TYR HIS GLN GLY SER GLY PRO ILE LEU PRO ARG ARG THR SEQRES 8 B 234 ASP GLU HIS ASP LEU MET LEU LEU LYS LEU ALA ARG PRO SEQRES 9 B 234 VAL VAL LEU GLY PRO ARG VAL ARG ALA LEU GLN LEU PRO SEQRES 10 B 234 TYR ARG CYS ALA GLN PRO GLY ASP GLN CYS GLN VAL ALA SEQRES 11 B 234 GLY TRP GLY THR THR ALA ALA ARG ARG VAL LYS TYR ASN SEQRES 12 B 234 LYS GLY LEU THR CYS SER SER ILE THR ILE LEU SER PRO SEQRES 13 B 234 LYS GLU CYS GLU VAL PHE TYR PRO GLY VAL VAL THR ASN SEQRES 14 B 234 ASN MET ILE CYS ALA GLY LEU ASP ARG GLY GLN ASP PRO SEQRES 15 B 234 CYS GLN SER ASP SER GLY GLY PRO LEU VAL CYS ASP GLU SEQRES 16 B 234 THR LEU GLN GLY ILE LEU SER TRP GLY VAL TYR PRO CYS SEQRES 17 B 234 GLY SER ALA GLN HIS PRO ALA VAL TYR THR GLN ILE CYS SEQRES 18 B 234 LYS TYR MET SER TRP ILE ASN LYS VAL ILE ARG SER ASN HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 HOH *135(H2 O) HELIX 1 AA1 ALA A 55 GLY A 59 5 5 HELIX 2 AA2 LYS A 166 TYR A 172 1 7 HELIX 3 AA3 ASP A 189 SER A 193 5 5 HELIX 4 AA4 TYR A 234 ILE A 242 1 9 HELIX 5 AA5 SER B 164 TYR B 172 1 9 HELIX 6 AA6 ASP B 189 SER B 193 5 5 HELIX 7 AA7 TYR B 234 ARG B 243 1 10 SHEET 1 AA1 7 GLN A 30 ASN A 35 0 SHEET 2 AA1 7 SER A 39 ASP A 48 -1 O CYS A 42 N LEU A 33 SHEET 3 AA1 7 TRP A 51 THR A 54 -1 O LEU A 53 N VAL A 45 SHEET 4 AA1 7 MET A 104 LEU A 108 -1 O LEU A 106 N VAL A 52 SHEET 5 AA1 7 GLN A 81 VAL A 90 -1 N VAL A 89 O LEU A 105 SHEET 6 AA1 7 TRP A 64 VAL A 67 -1 N ALA A 65 O ARG A 83 SHEET 7 AA1 7 GLN A 30 ASN A 35 -1 N SER A 32 O ARG A 66 SHEET 1 AA2 7 GLN A 135 GLY A 140 0 SHEET 2 AA2 7 THR A 156 ILE A 162 -1 O ILE A 160 N CYS A 136 SHEET 3 AA2 7 MET A 180 LEU A 185 -1 O GLY A 184 N THR A 161 SHEET 4 AA2 7 ALA A 226 GLN A 230 -1 O TYR A 228 N ILE A 181 SHEET 5 AA2 7 THR A 208 TRP A 215 -1 N TRP A 215 O VAL A 227 SHEET 6 AA2 7 PRO A 198 CYS A 201 -1 N CYS A 201 O THR A 208 SHEET 7 AA2 7 GLN A 135 GLY A 140 -1 N GLN A 137 O VAL A 200 SHEET 1 AA3 7 GLN B 30 ASN B 35 0 SHEET 2 AA3 7 SER B 39 ASP B 48 -1 O GLY B 44 N VAL B 31 SHEET 3 AA3 7 TRP B 51 THR B 54 -1 O LEU B 53 N VAL B 45 SHEET 4 AA3 7 MET B 104 LEU B 108 -1 O LEU B 106 N VAL B 52 SHEET 5 AA3 7 GLN B 81 VAL B 90 -1 N THR B 86 O LYS B 107 SHEET 6 AA3 7 TRP B 64 VAL B 67 -1 N ALA B 65 O ARG B 83 SHEET 7 AA3 7 GLN B 30 ASN B 35 -1 N SER B 32 O ARG B 66 SHEET 1 AA4 7 GLN B 135 GLY B 140 0 SHEET 2 AA4 7 THR B 156 ILE B 162 -1 O THR B 156 N GLY B 140 SHEET 3 AA4 7 MET B 180 GLY B 184 -1 O GLY B 184 N THR B 161 SHEET 4 AA4 7 ALA B 226 GLN B 230 -1 O TYR B 228 N ILE B 181 SHEET 5 AA4 7 THR B 208 TRP B 215 -1 N TRP B 215 O VAL B 227 SHEET 6 AA4 7 PRO B 198 CYS B 201 -1 N CYS B 201 O THR B 208 SHEET 7 AA4 7 GLN B 135 GLY B 140 -1 N GLN B 137 O VAL B 200 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.02 SSBOND 3 CYS A 129 CYS A 232 1555 1555 2.03 SSBOND 4 CYS A 136 CYS A 201 1555 1555 2.02 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.03 SSBOND 6 CYS A 191 CYS A 220 1555 1555 2.03 SSBOND 7 CYS B 22 CYS B 157 1555 1555 2.02 SSBOND 8 CYS B 42 CYS B 58 1555 1555 2.02 SSBOND 9 CYS B 129 CYS B 232 1555 1555 2.03 SSBOND 10 CYS B 136 CYS B 201 1555 1555 2.03 SSBOND 11 CYS B 168 CYS B 182 1555 1555 2.02 SSBOND 12 CYS B 191 CYS B 220 1555 1555 2.03 CISPEP 1 LYS A 61 PRO A 62 0 -18.74 CISPEP 2 TYR A 218 PRO A 219 0 0.57 CISPEP 3 LYS B 61 PRO B 62 0 -21.30 CISPEP 4 TYR B 218 PRO B 219 0 1.37 SITE 1 AC1 5 TRP A 215 GLY A 216 VAL A 217 TYR A 218 SITE 2 AC1 5 HOH A 401 SITE 1 AC2 4 ARG A 186A GLY A 187 SER A 222 ALA A 223 SITE 1 AC3 3 CYS A 129 GLN A 230 LYS A 233 SITE 1 AC4 5 THR A 98 ASP A 99 VAL A 175 VAL A 176 SITE 2 AC4 5 TRP A 215 SITE 1 AC5 3 GLY B 216 VAL B 217 TYR B 218 SITE 1 AC6 4 GLN B 131 GLN B 230 LYS B 233 HOH B 410 SITE 1 AC7 4 GLN B 81 ARG B 83 ARG B 110 HOH B 417 CRYST1 53.602 66.841 57.900 90.00 104.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018656 0.000000 0.004752 0.00000 SCALE2 0.000000 0.014961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017823 0.00000