PDB Short entry for 5LXG HEADER MEMBRANE PROTEIN 21-SEP-16 5LXG TITLE REVISED CRYSTAL STRUCTURE OF THE HUMAN ADIPONECTIN RECEPTOR 1 IN AN TITLE 2 OPEN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADIPONECTIN RECEPTOR PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROGESTIN AND ADIPOQ RECEPTOR FAMILY MEMBER I; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: V REGION HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: V REGION LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADIPOR1, PAQR1, TESBP1A, CGI-45; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 OTHER_DETAILS: E.COLI CELL-FREE PROTEIN SYNTHESIS; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 OTHER_DETAILS: E.COLI CELL-FREE PROTEIN SYNTHESIS KEYWDS PROGESTIN AND ADIPOQ RECEPTOR FAMILY, INTEGRAL MEMBRANE PROTEIN, 7TM, KEYWDS 2 CERAMIDASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.LEYRAT,I.VASILIAUSKAITE-BROOKS,S.GRANIER REVDAT 6 17-JAN-24 5LXG 1 REMARK REVDAT 5 16-OCT-19 5LXG 1 REMARK REVDAT 4 31-JAN-18 5LXG 1 REMARK REVDAT 3 12-APR-17 5LXG 1 JRNL REVDAT 2 05-APR-17 5LXG 1 JRNL REVDAT 1 22-MAR-17 5LXG 0 SPRSDE 22-MAR-17 5LXG 3WXV JRNL AUTH I.VASILIAUSKAITE-BROOKS,R.SOUNIER,P.ROCHAIX,G.BELLOT, JRNL AUTH 2 M.FORTIER,F.HOH,L.DE COLIBUS,C.BECHARA,E.M.SAIED,C.ARENZ, JRNL AUTH 3 C.LEYRAT,S.GRANIER JRNL TITL STRUCTURAL INSIGHTS INTO ADIPONECTIN RECEPTORS SUGGEST JRNL TITL 2 CERAMIDASE ACTIVITY. JRNL REF NATURE V. 6 120 2017 JRNL REFN ISSN 0028-0836 JRNL PMID 28329765 JRNL DOI 10.1038/NATURE21714 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 17798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 890 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.45 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2583 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2510 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2454 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 129 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.60390 REMARK 3 B22 (A**2) : 13.10540 REMARK 3 B33 (A**2) : 4.49850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.440 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 2.115 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.312 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.301 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.312 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4167 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5660 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1347 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 616 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4167 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 521 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5171 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.65 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 21.0960 43.9982 -5.9642 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: -0.0857 REMARK 3 T33: -0.1505 T12: 0.2381 REMARK 3 T13: -0.0627 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 0.4843 L22: 5.6808 REMARK 3 L33: 0.7566 L12: -0.1315 REMARK 3 L13: -0.4713 L23: 1.3397 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: 0.0073 S13: 0.0549 REMARK 3 S21: -0.0368 S22: -0.0165 S23: 0.1380 REMARK 3 S31: -0.3042 S32: -0.0735 S33: -0.0619 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.2210 -3.2063 -20.1650 REMARK 3 T TENSOR REMARK 3 T11: -0.0804 T22: 0.0328 REMARK 3 T33: -0.0614 T12: -0.0700 REMARK 3 T13: -0.0759 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.3672 L22: 2.1445 REMARK 3 L33: 1.6984 L12: 1.8685 REMARK 3 L13: 0.3653 L23: 0.1214 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.0852 S13: 0.0372 REMARK 3 S21: -0.1734 S22: 0.0304 S23: 0.1447 REMARK 3 S31: 0.1507 S32: -0.3099 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 34.5165 3.7607 -15.8313 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: -0.0730 REMARK 3 T33: -0.0147 T12: -0.0125 REMARK 3 T13: -0.0061 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.8567 L22: 1.5727 REMARK 3 L33: 2.9459 L12: -0.4116 REMARK 3 L13: -0.0562 L23: -0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.0033 S13: -0.0925 REMARK 3 S21: -0.1164 S22: -0.0755 S23: 0.0308 REMARK 3 S31: -0.0262 S32: -0.0504 S33: 0.0927 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 97.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9340 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WXV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BICINE, 100MM MGCL2, 30% PEG400, REMARK 280 PH 8.0, LIPIDIC MESOPHASE METHOD, TEMPERATURE 293K, LIPIDIC REMARK 280 CUBIC PHASE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.15500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 97.05500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.15500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.05500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.16500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.15500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.05500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.16500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.15500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 97.05500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ASP A -16 REMARK 465 TYR A -15 REMARK 465 LYS A -14 REMARK 465 ASP A -13 REMARK 465 ASP A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 LYS A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 CYS A 369 REMARK 465 THR A 370 REMARK 465 ASP A 371 REMARK 465 ASP A 372 REMARK 465 THR A 373 REMARK 465 LEU A 374 REMARK 465 LEU A 375 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO A 159 REMARK 475 ASN A 160 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 162 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 PHE A 163 CG CD1 CD2 CE1 CE2 CZ REMARK 480 TRP A 255 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 480 TRP A 255 CH2 REMARK 480 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 480 PHE A 258 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP H 35 OE2 GLU H 99 1.90 REMARK 500 O ALA A 165 OE2 GLU A 169 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 366 O PHE H 88 7554 1.77 REMARK 500 OE2 GLU A 366 C PHE H 88 7554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 167 -6.77 81.49 REMARK 500 ALA A 259 169.76 71.92 REMARK 500 THR A 260 161.69 75.74 REMARK 500 ALA L 51 -53.51 70.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 583 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 584 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 585 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 587 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 588 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 589 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 590 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A 593 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 594 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A 596 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A 599 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH A 600 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH A 602 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH H 229 DISTANCE = 7.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 NE2 REMARK 620 2 HIS A 337 NE2 78.1 REMARK 620 3 HIS A 341 NE2 93.6 72.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WXV RELATED DB: PDB REMARK 900 3WXV CONTAINS THE SAME PROTEIN WITH A LARGE ERROR IN THE POSITION REMARK 900 OF TRANSMEMBRANE HELIX 5 (TM5) AND THE LOOP CONNECTING TM4 AND TM5. REMARK 900 THE ERROR APPEARS TO ARISE FROM INCORRECT MODEL BUILDING AND REMARK 900 REFINEMENT. DBREF 5LXG A 89 375 UNP Q96A54 ADR1_HUMAN 89 375 DBREF 5LXG H 1 119 PDB 5LXG 5LXG 1 119 DBREF 5LXG L 1 107 PDB 5LXG 5LXG 1 107 SEQADV 5LXG MET A -17 UNP Q96A54 INITIATING METHIONINE SEQADV 5LXG ASP A -16 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG TYR A -15 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG LYS A -14 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG ASP A -13 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG ASP A -12 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG ASP A -11 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG ASP A -10 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG LYS A -9 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG GLU A -8 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG ASN A -7 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG LEU A -6 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG TYR A -5 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG PHE A -4 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG GLN A -3 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG GLY A -2 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG GLY A -1 UNP Q96A54 EXPRESSION TAG SEQADV 5LXG SER A 0 UNP Q96A54 EXPRESSION TAG SEQRES 1 A 305 MET ASP TYR LYS ASP ASP ASP ASP LYS GLU ASN LEU TYR SEQRES 2 A 305 PHE GLN GLY GLY SER GLU GLY ARG TRP ARG VAL ILE PRO SEQRES 3 A 305 TYR ASP VAL LEU PRO ASP TRP LEU LYS ASP ASN ASP TYR SEQRES 4 A 305 LEU LEU HIS GLY HIS ARG PRO PRO MET PRO SER PHE ARG SEQRES 5 A 305 ALA CYS PHE LYS SER ILE PHE ARG ILE HIS THR GLU THR SEQRES 6 A 305 GLY ASN ILE TRP THR HIS LEU LEU GLY PHE VAL LEU PHE SEQRES 7 A 305 LEU PHE LEU GLY ILE LEU THR MET LEU ARG PRO ASN MET SEQRES 8 A 305 TYR PHE MET ALA PRO LEU GLN GLU LYS VAL VAL PHE GLY SEQRES 9 A 305 MET PHE PHE LEU GLY ALA VAL LEU CYS LEU SER PHE SER SEQRES 10 A 305 TRP LEU PHE HIS THR VAL TYR CYS HIS SER GLU LYS VAL SEQRES 11 A 305 SER ARG THR PHE SER LYS LEU ASP TYR SER GLY ILE ALA SEQRES 12 A 305 LEU LEU ILE MET GLY SER PHE VAL PRO TRP LEU TYR TYR SEQRES 13 A 305 SER PHE TYR CYS SER PRO GLN PRO ARG LEU ILE TYR LEU SEQRES 14 A 305 SER ILE VAL CYS VAL LEU GLY ILE SER ALA ILE ILE VAL SEQRES 15 A 305 ALA GLN TRP ASP ARG PHE ALA THR PRO LYS HIS ARG GLN SEQRES 16 A 305 THR ARG ALA GLY VAL PHE LEU GLY LEU GLY LEU SER GLY SEQRES 17 A 305 VAL VAL PRO THR MET HIS PHE THR ILE ALA GLU GLY PHE SEQRES 18 A 305 VAL LYS ALA THR THR VAL GLY GLN MET GLY TRP PHE PHE SEQRES 19 A 305 LEU MET ALA VAL MET TYR ILE THR GLY ALA GLY LEU TYR SEQRES 20 A 305 ALA ALA ARG ILE PRO GLU ARG PHE PHE PRO GLY LYS PHE SEQRES 21 A 305 ASP ILE TRP PHE GLN SER HIS GLN ILE PHE HIS VAL LEU SEQRES 22 A 305 VAL VAL ALA ALA ALA PHE VAL HIS PHE TYR GLY VAL SER SEQRES 23 A 305 ASN LEU GLN GLU PHE ARG TYR GLY LEU GLU GLY GLY CYS SEQRES 24 A 305 THR ASP ASP THR LEU LEU SEQRES 1 H 119 GLU VAL LEU LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 119 PRO GLY ALA SER VAL ARG ILE THR CYS LYS ALA SER GLY SEQRES 3 H 119 TYR THR PHE THR ASP PHE ASN MET ASP TRP VAL LYS GLN SEQRES 4 H 119 SER PRO GLY LYS SER LEU GLU TRP ILE GLY ASP PHE ASN SEQRES 5 H 119 PRO ASN SER GLY GLY SER ILE TYR ASN GLN LYS PHE LYS SEQRES 6 H 119 ASP LYS ALA THR PHE THR VAL ASP LYS SER SER SER THR SEQRES 7 H 119 ALA TYR MET GLU LEU ARG SER LEU THR PHE GLU ASP THR SEQRES 8 H 119 ALA VAL TYR TYR CYS ALA ARG GLU THR GLY THR ALA TRP SEQRES 9 H 119 PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 119 ALA ALA SEQRES 1 L 107 ASP ILE GLN MET THR GLN SER PRO ALA SER LEU SER ALA SEQRES 2 L 107 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 107 GLY ASN ILE HIS ASN PHE LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 107 GLN GLY LYS SER PRO GLN VAL LEU VAL TYR ASN ALA LYS SEQRES 5 L 107 THR LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 107 GLY SER GLY THR GLN TYR SER LEU LYS ILE ASN SER LEU SEQRES 7 L 107 GLN PRO GLU ASP PHE GLY SER TYR TYR CYS GLN GLN PHE SEQRES 8 L 107 TRP SER THR PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 107 GLU ILE ASN HET ZN A 401 1 HET SO4 A 402 5 HET SO4 L 201 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 4 ZN ZN 2+ FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *169(H2 O) HELIX 1 AA1 PRO A 96 LEU A 100 5 5 HELIX 2 AA2 PRO A 101 LYS A 105 5 5 HELIX 3 AA3 SER A 120 SER A 127 1 8 HELIX 4 AA4 ILE A 128 ARG A 130 5 3 HELIX 5 AA5 GLU A 134 LEU A 157 1 24 HELIX 6 AA6 GLN A 168 VAL A 193 1 26 HELIX 7 AA7 SER A 197 PHE A 228 1 32 HELIX 8 AA8 SER A 231 TRP A 255 1 25 HELIX 9 AA9 GLN A 265 GLY A 278 1 14 HELIX 10 AB1 GLY A 278 GLY A 290 1 13 HELIX 11 AB2 GLY A 290 VAL A 297 1 8 HELIX 12 AB3 PHE A 303 ARG A 320 1 18 HELIX 13 AB4 GLN A 335 LEU A 365 1 31 HELIX 14 AB5 THR H 28 PHE H 32 5 5 HELIX 15 AB6 GLN H 62 LYS H 65 5 4 HELIX 16 AB7 THR H 87 THR H 91 5 5 HELIX 17 AB8 GLN L 79 PHE L 83 5 5 SHEET 1 AA1 4 LEU H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA1 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA2 6 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N ASP H 35 O ALA H 97 SHEET 5 AA2 6 LEU H 45 ASN H 52 -1 O PHE H 51 N MET H 34 SHEET 6 AA2 6 GLY H 57 TYR H 60 -1 O ILE H 59 N ASP H 50 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA3 4 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA3 4 PHE H 105 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AA4 4 MET L 4 SER L 7 0 SHEET 2 AA4 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA4 4 GLN L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 4 AA4 4 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 AA5 6 SER L 10 SER L 14 0 SHEET 2 AA5 6 THR L 102 ASN L 107 1 O LYS L 103 N LEU L 11 SHEET 3 AA5 6 GLY L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA5 6 LEU L 33 GLN L 38 -1 N GLN L 38 O SER L 85 SHEET 5 AA5 6 GLN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA5 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA6 4 SER L 10 SER L 14 0 SHEET 2 AA6 4 THR L 102 ASN L 107 1 O LYS L 103 N LEU L 11 SHEET 3 AA6 4 GLY L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA6 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.10 SSBOND 2 CYS L 23 CYS L 88 1555 1555 2.87 LINK NE2 HIS A 191 ZN ZN A 401 1555 1555 2.35 LINK NE2 HIS A 337 ZN ZN A 401 1555 1555 2.31 LINK NE2 HIS A 341 ZN ZN A 401 1555 1555 2.08 CISPEP 1 ALA A 165 PRO A 166 0 11.70 CISPEP 2 THR A 260 PRO A 261 0 -1.26 CISPEP 3 ILE A 321 PRO A 322 0 3.46 CISPEP 4 SER L 7 PRO L 8 0 0.33 CISPEP 5 THR L 94 PRO L 95 0 -3.03 SITE 1 AC1 5 SER A 187 HIS A 191 ASP A 208 HIS A 337 SITE 2 AC1 5 HIS A 341 SITE 1 AC2 4 SER A 120 PHE A 121 ARG A 122 HIS L 30 SITE 1 AC3 3 ARG A 122 ASN L 28 HIS L 30 CRYST1 92.310 194.110 74.330 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013454 0.00000