PDB Short entry for 5M5F HEADER HYDROLASE 21-OCT-16 5M5F TITLE THERMOLYSIN IN COMPLEX WITH INHIBITOR AND KRYPTON COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: UNP RESIDUES 233-548; COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE, METALLOPROTEASE, HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.KRIMMER,J.CRAMER,A.HEINE,G.KLEBE REVDAT 2 17-JAN-24 5M5F 1 LINK REVDAT 1 16-AUG-17 5M5F 0 JRNL AUTH S.G.KRIMMER,J.CRAMER,J.SCHIEBEL,A.HEINE,G.KLEBE JRNL TITL HOW NOTHING BOOSTS AFFINITY: HYDROPHOBIC LIGAND BINDING TO JRNL TITL 2 THE VIRTUALLY VACATED S1' POCKET OF THERMOLYSIN. JRNL REF J. AM. CHEM. SOC. V. 139 10419 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28696673 JRNL DOI 10.1021/JACS.7B05028 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.139 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5749 - 3.9893 1.00 2949 156 0.1535 0.1893 REMARK 3 2 3.9893 - 3.1667 1.00 2777 146 0.1367 0.1375 REMARK 3 3 3.1667 - 2.7665 1.00 2728 143 0.1179 0.1343 REMARK 3 4 2.7665 - 2.5136 1.00 2705 143 0.1091 0.1219 REMARK 3 5 2.5136 - 2.3334 1.00 2693 141 0.1071 0.1240 REMARK 3 6 2.3334 - 2.1959 1.00 2675 141 0.0991 0.1226 REMARK 3 7 2.1959 - 2.0859 1.00 2683 142 0.0995 0.1215 REMARK 3 8 2.0859 - 1.9951 1.00 2661 140 0.1009 0.1241 REMARK 3 9 1.9951 - 1.9183 1.00 2656 139 0.0996 0.1272 REMARK 3 10 1.9183 - 1.8521 1.00 2654 140 0.0978 0.1353 REMARK 3 11 1.8521 - 1.7942 1.00 2639 139 0.0975 0.1229 REMARK 3 12 1.7942 - 1.7429 1.00 2652 140 0.0933 0.1471 REMARK 3 13 1.7429 - 1.6970 1.00 2645 139 0.0940 0.1302 REMARK 3 14 1.6970 - 1.6556 1.00 2637 139 0.0931 0.1463 REMARK 3 15 1.6556 - 1.6180 1.00 2627 138 0.0909 0.1138 REMARK 3 16 1.6180 - 1.5835 1.00 2636 138 0.0911 0.1392 REMARK 3 17 1.5835 - 1.5519 1.00 2627 139 0.0887 0.1557 REMARK 3 18 1.5519 - 1.5226 1.00 2631 138 0.0905 0.1185 REMARK 3 19 1.5226 - 1.4954 1.00 2610 138 0.0930 0.1443 REMARK 3 20 1.4954 - 1.4700 1.00 2640 139 0.0928 0.1455 REMARK 3 21 1.4700 - 1.4463 1.00 2609 137 0.0952 0.1424 REMARK 3 22 1.4463 - 1.4241 1.00 2620 138 0.1001 0.1487 REMARK 3 23 1.4241 - 1.4031 1.00 2604 137 0.0954 0.1444 REMARK 3 24 1.4031 - 1.3834 1.00 2638 139 0.1004 0.1237 REMARK 3 25 1.3834 - 1.3647 1.00 2606 137 0.0995 0.1222 REMARK 3 26 1.3647 - 1.3469 1.00 2630 138 0.1083 0.1489 REMARK 3 27 1.3469 - 1.3301 0.99 2564 135 0.1205 0.1704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2621 REMARK 3 ANGLE : 1.169 3582 REMARK 3 CHIRALITY : 0.089 378 REMARK 3 PLANARITY : 0.009 475 REMARK 3 DIHEDRAL : 18.079 901 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.859400 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 19.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS/HCL, 1.9 M CSCL, 50% DMSO, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.39733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.79467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.09600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.49333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.69867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.39733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.79467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.49333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.09600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.69867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 769 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE E 1 CD1 REMARK 470 GLN E 128 CG CD OE1 NE2 REMARK 470 LYS E 182 CG CD CE NZ REMARK 470 LYS E 210 CG CD CE NZ REMARK 470 THR E 222 CG2 REMARK 470 LYS E 265 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP E 16 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 94.28 -161.93 REMARK 500 THR E 26 -58.99 69.58 REMARK 500 SER E 92 -173.29 60.35 REMARK 500 SER E 107 -162.80 61.45 REMARK 500 ASN E 111 54.33 -91.68 REMARK 500 THR E 152 -100.24 -120.12 REMARK 500 ASN E 159 -145.51 57.22 REMARK 500 THR E 194 74.31 46.52 REMARK 500 ILE E 232 -61.85 -104.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 882 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH E 883 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH E 884 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 52.2 REMARK 620 3 ASP E 59 OD1 122.9 71.0 REMARK 620 4 GLN E 61 O 94.0 88.6 89.1 REMARK 620 5 HOH E 547 O 157.7 147.2 76.8 97.0 REMARK 620 6 HOH E 577 O 81.7 132.4 154.8 83.1 80.4 REMARK 620 7 HOH E 768 O 85.7 88.6 88.2 176.7 84.4 100.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 78.0 REMARK 620 3 GLU E 177 OE2 127.3 49.5 REMARK 620 4 ASP E 185 OD1 160.0 122.0 72.6 REMARK 620 5 GLU E 187 O 83.7 146.1 141.5 79.0 REMARK 620 6 GLU E 190 OE1 83.4 127.6 123.1 83.2 77.4 REMARK 620 7 GLU E 190 OE2 99.3 83.7 74.6 83.6 127.8 51.7 REMARK 620 8 HOH E 559 O 97.0 79.5 78.9 88.1 74.6 151.8 153.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 102.9 REMARK 620 3 GLU E 166 OE2 124.5 96.7 REMARK 620 4 7GR E 408 O30 112.1 127.1 94.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 92.5 REMARK 620 3 ASP E 185 OD2 87.5 90.2 REMARK 620 4 GLU E 190 OE2 84.1 171.4 81.8 REMARK 620 5 HOH E 541 O 88.3 94.3 174.0 93.5 REMARK 620 6 HOH E 585 O 173.3 92.4 97.0 91.6 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 77.5 REMARK 620 3 THR E 194 OG1 76.7 71.7 REMARK 620 4 ILE E 197 O 155.6 79.3 103.3 REMARK 620 5 ASP E 200 OD1 121.5 133.7 73.0 80.7 REMARK 620 6 HOH E 598 O 83.6 151.8 124.1 114.5 74.3 REMARK 620 7 HOH E 752 O 88.5 83.2 153.0 81.0 133.7 75.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7GR E 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KR E 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KR E 414 DBREF 5M5F E 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET ZN E 401 1 HET CA E 402 1 HET CA E 403 1 HET CA E 404 1 HET CA E 405 1 HET GOL E 406 6 HET GOL E 407 6 HET 7GR E 408 32 HET DMS E 409 4 HET DMS E 410 4 HET DMS E 411 4 HET DMS E 412 4 HET KR E 413 1 HET KR E 414 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM 7GR (2~{S})-4-METHYL-2-[2- HETNAM 2 7GR [[OXIDANYL(PHENYLMETHOXYCARBONYLAMINOMETHYL) HETNAM 3 7GR PHOSPHORYL]AMINO]ETHANOYLAMINO]PENTANOIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM KR KRYPTON HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 7GR C17 H26 N3 O7 P FORMUL 10 DMS 4(C2 H6 O S) FORMUL 14 KR 2(KR) FORMUL 16 HOH *384(H2 O) HELIX 1 AA1 ALA E 64 TYR E 66 5 3 HELIX 2 AA2 ASP E 67 ASN E 89 1 23 HELIX 3 AA3 PRO E 132 GLY E 135 5 4 HELIX 4 AA4 GLY E 136 THR E 152 1 17 HELIX 5 AA5 GLN E 158 ASN E 181 1 24 HELIX 6 AA6 ASP E 207 GLY E 212 5 6 HELIX 7 AA7 HIS E 216 ARG E 220 5 5 HELIX 8 AA8 THR E 224 VAL E 230 1 7 HELIX 9 AA9 ASN E 233 GLY E 247 1 15 HELIX 10 AB1 GLY E 259 TYR E 274 1 16 HELIX 11 AB2 ASN E 280 GLY E 297 1 18 HELIX 12 AB3 SER E 300 VAL E 313 1 14 SHEET 1 AA1 5 ALA E 56 ASP E 57 0 SHEET 2 AA1 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 AA1 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 AA1 5 THR E 4 ARG E 11 -1 N GLY E 8 O ILE E 20 SHEET 5 AA1 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 AA2 3 GLN E 31 ASP E 32 0 SHEET 2 AA2 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA2 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 AA3 5 GLN E 31 ASP E 32 0 SHEET 2 AA3 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA3 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 AA3 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 AA3 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 AA4 2 GLU E 187 ILE E 188 0 SHEET 2 AA4 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 AA5 2 GLY E 248 HIS E 250 0 SHEET 2 AA5 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 403 1555 1555 2.38 LINK OD2 ASP E 57 CA CA E 403 1555 1555 2.55 LINK OD1 ASP E 59 CA CA E 403 1555 1555 2.38 LINK O GLN E 61 CA CA E 403 1555 1555 2.25 LINK OD2 ASP E 138 CA CA E 402 1555 1555 2.37 LINK NE2 HIS E 142 ZN ZN E 401 1555 1555 2.02 LINK NE2 HIS E 146 ZN ZN E 401 1555 1555 2.02 LINK OE2 GLU E 166 ZN ZN E 401 1555 1555 1.98 LINK OE1 GLU E 177 CA CA E 402 1555 1555 2.46 LINK OE2 GLU E 177 CA CA E 402 1555 1555 2.73 LINK OE2 GLU E 177 CA CA E 404 1555 1555 2.42 LINK O ASN E 183 CA CA E 404 1555 1555 2.28 LINK OD1 ASP E 185 CA CA E 402 1555 1555 2.48 LINK OD2 ASP E 185 CA CA E 404 1555 1555 2.34 LINK O GLU E 187 CA CA E 402 1555 1555 2.33 LINK OE1 GLU E 190 CA CA E 402 1555 1555 2.49 LINK OE2 GLU E 190 CA CA E 402 1555 1555 2.51 LINK OE2 GLU E 190 CA CA E 404 1555 1555 2.32 LINK O TYR E 193 CA CA E 405 1555 1555 2.35 LINK O THR E 194 CA CA E 405 1555 1555 2.42 LINK OG1 THR E 194 CA CA E 405 1555 1555 2.38 LINK O ILE E 197 CA CA E 405 1555 1555 2.30 LINK OD1 ASP E 200 CA CA E 405 1555 1555 2.40 LINK ZN ZN E 401 O30 7GR E 408 1555 1555 1.96 LINK CA CA E 402 O HOH E 559 1555 1555 2.42 LINK CA CA E 403 O HOH E 547 1555 1555 2.40 LINK CA CA E 403 O HOH E 577 1555 1555 2.42 LINK CA CA E 403 O HOH E 768 1555 1555 2.30 LINK CA CA E 404 O HOH E 541 1555 1555 2.31 LINK CA CA E 404 O HOH E 585 1555 1555 2.32 LINK CA CA E 405 O HOH E 598 1555 1555 2.39 LINK CA CA E 405 O HOH E 752 1555 1555 2.39 CISPEP 1 LEU E 50 PRO E 51 0 4.71 SITE 1 AC1 4 HIS E 142 HIS E 146 GLU E 166 7GR E 408 SITE 1 AC2 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC2 6 GLU E 190 HOH E 559 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 547 SITE 2 AC3 6 HOH E 577 HOH E 768 SITE 1 AC4 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC4 6 HOH E 541 HOH E 585 SITE 1 AC5 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC5 6 HOH E 598 HOH E 752 SITE 1 AC6 8 GLY E 109 TYR E 110 ASN E 111 ASN E 112 SITE 2 AC6 8 HOH E 639 HOH E 677 HOH E 729 HOH E 766 SITE 1 AC7 8 PHE E 114 TRP E 115 HIS E 146 TYR E 157 SITE 2 AC7 8 7GR E 408 HOH E 510 HOH E 523 HOH E 705 SITE 1 AC8 21 TYR E 106 ASN E 112 ALA E 113 PHE E 114 SITE 2 AC8 21 TRP E 115 PHE E 130 HIS E 142 GLU E 143 SITE 3 AC8 21 HIS E 146 TYR E 157 GLU E 166 LEU E 202 SITE 4 AC8 21 ARG E 203 HIS E 231 ZN E 401 GOL E 407 SITE 5 AC8 21 DMS E 409 KR E 414 HOH E 501 HOH E 535 SITE 6 AC8 21 HOH E 550 SITE 1 AC9 5 TYR E 110 ASN E 112 PHE E 114 7GR E 408 SITE 2 AC9 5 HOH E 562 SITE 1 AD1 5 ILE E 1 THR E 2 GLY E 3 GLN E 31 SITE 2 AD1 5 ASN E 33 SITE 1 AD2 5 GLY E 95 PRO E 184 TRP E 186 HOH E 688 SITE 2 AD2 5 HOH E 730 SITE 1 AD3 6 TYR E 66 HIS E 216 SER E 218 TYR E 251 SITE 2 AD3 6 HOH E 850 HOH E 871 SITE 1 AD4 4 TYR E 84 SER E 92 TYR E 93 LEU E 144 SITE 1 AD5 4 HIS E 142 ILE E 188 ARG E 203 7GR E 408 CRYST1 92.428 92.428 130.192 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010819 0.006246 0.000000 0.00000 SCALE2 0.000000 0.012493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007681 0.00000