PDB Short entry for 5M5S HEADER ENDOCYTOSIS 22-OCT-16 5M5S TITLE CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN BOUND TO AMPHIPHYSIN CLATHRIN- TITLE 2 BOX MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL RESIDUES 'GS' ARE RESIDUAL FOLLOWING COMPND 6 CLEAVAGE OF THE PURIFICATION TAG; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AMPHIPHYSIN; COMPND 9 CHAIN: E, F, G, H; COMPND 10 FRAGMENT: CLATHRIN-BOX MOTIF, UNP RESIDUES 349-358; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: CLTC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPT3G; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR J.MUENZNER,S.C.GRAHAM REVDAT 3 17-JAN-24 5M5S 1 REMARK REVDAT 2 11-JAN-17 5M5S 1 JRNL REVDAT 1 16-NOV-16 5M5S 0 JRNL AUTH J.MUENZNER,L.M.TRAUB,B.T.KELLY,S.C.GRAHAM JRNL TITL CELLULAR AND VIRAL PEPTIDES BIND MULTIPLE SITES ON THE JRNL TITL 2 N-TERMINAL DOMAIN OF CLATHRIN. JRNL REF TRAFFIC V. 18 44 2017 JRNL REFN ESSN 1600-0854 JRNL PMID 27813245 JRNL DOI 10.1111/TRA.12457 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 99868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7300 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 416 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 803 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6273 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6072 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8533 ; 1.396 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14018 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 806 ; 6.286 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;36.388 ;25.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1118 ;13.091 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;13.984 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 967 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7208 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1402 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3136 ; 0.732 ; 1.044 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3135 ; 0.731 ; 1.042 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3950 ; 1.346 ; 1.545 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3951 ; 1.345 ; 1.547 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3137 ; 0.515 ; 1.089 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3138 ; 0.515 ; 1.091 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4576 ; 0.974 ; 1.625 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7002 ; 8.134 ;10.331 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7002 ; 8.134 ;10.331 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0310 0.2760 17.6340 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1401 REMARK 3 T33: 0.0280 T12: -0.0205 REMARK 3 T13: 0.0496 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.7628 L22: 0.8615 REMARK 3 L33: 1.0597 L12: 0.1971 REMARK 3 L13: 0.1864 L23: 0.3826 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: -0.0451 S13: 0.0229 REMARK 3 S21: 0.0260 S22: -0.0029 S23: -0.0296 REMARK 3 S31: 0.0001 S32: 0.1122 S33: -0.0528 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 363 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1420 20.5890 58.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.1282 REMARK 3 T33: 0.0179 T12: -0.0220 REMARK 3 T13: 0.0402 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.0488 L22: 0.8548 REMARK 3 L33: 0.7769 L12: 0.2563 REMARK 3 L13: -0.0965 L23: -0.0862 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0514 S13: 0.0512 REMARK 3 S21: -0.0403 S22: -0.0026 S23: 0.0222 REMARK 3 S31: 0.0642 S32: -0.0896 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0746 REMARK 3 T33: 0.0746 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0746 REMARK 3 T33: 0.0746 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99868 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 67.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.09200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1C9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL PROTEIN:PEPTIDE MIX (14 MG/ML NTD REMARK 280 AND 3.4 MM PEPTIDE) PLUS 2 UL RESERVOIR EQUILIBRATED AGAINST A REMARK 280 200 UL RESERVOIR OF 0.85 M SODIUM MALONATE PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.98350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.98350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 838 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 PHE E 8 REMARK 465 ASP E 9 REMARK 465 PRO E 10 REMARK 465 PHE F 8 REMARK 465 ASP F 9 REMARK 465 PRO F 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU G 1 CG CD OE1 OE2 REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 713 O HOH A 713 2555 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 60.08 -159.88 REMARK 500 ASN A 60 66.49 -118.96 REMARK 500 GLU A 135 42.86 -107.81 REMARK 500 ALA A 224 57.68 -95.96 REMARK 500 ALA A 256 65.77 -112.21 REMARK 500 ASP B 57 64.19 -151.24 REMARK 500 ASN B 60 69.18 -117.07 REMARK 500 LYS B 112 146.78 -170.16 REMARK 500 ALA B 256 68.18 -109.32 REMARK 500 PHE G 8 43.18 -96.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 886 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 896 DISTANCE = 5.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 DBREF 5M5S A 1 363 UNP P49951 CLH1_BOVIN 1 363 DBREF 5M5S B 1 363 UNP P49951 CLH1_BOVIN 1 363 DBREF 5M5S E 1 10 UNP P49418 AMPH_HUMAN 349 358 DBREF 5M5S F 1 10 UNP P49418 AMPH_HUMAN 349 358 DBREF 5M5S G 1 10 UNP P49418 AMPH_HUMAN 349 358 DBREF 5M5S H 1 10 UNP P49418 AMPH_HUMAN 349 358 SEQADV 5M5S GLY A -1 UNP P49951 EXPRESSION TAG SEQADV 5M5S SER A 0 UNP P49951 EXPRESSION TAG SEQADV 5M5S GLY B -1 UNP P49951 EXPRESSION TAG SEQADV 5M5S SER B 0 UNP P49951 EXPRESSION TAG SEQRES 1 A 365 GLY SER MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU SEQRES 2 A 365 HIS LEU GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN SEQRES 3 A 365 ILE GLY PHE SER THR LEU THR MET GLU SER ASP LYS PHE SEQRES 4 A 365 ILE CYS ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL SEQRES 5 A 365 VAL ILE ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG SEQRES 6 A 365 ARG PRO ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SEQRES 7 A 365 SER LYS VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN SEQRES 8 A 365 ILE PHE ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS SEQRES 9 A 365 THR MET THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER SEQRES 10 A 365 LEU ASN THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR SEQRES 11 A 365 HIS TRP SER MET GLU GLY GLU SER GLN PRO VAL LYS MET SEQRES 12 A 365 PHE ASP ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE SEQRES 13 A 365 ASN TYR ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU SEQRES 14 A 365 THR GLY ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA SEQRES 15 A 365 MET GLN LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO SEQRES 16 A 365 ILE GLU GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET SEQRES 17 A 365 GLU GLY ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA SEQRES 18 A 365 VAL ARG GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU SEQRES 19 A 365 VAL GLY THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS SEQRES 20 A 365 LYS ALA VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN SEQRES 21 A 365 ASP PHE PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP SEQRES 22 A 365 VAL VAL PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU SEQRES 23 A 365 TYR ASP LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG SEQRES 24 A 365 ILE SER GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU SEQRES 25 A 365 ALA THR ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN SEQRES 26 A 365 VAL LEU SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO SEQRES 27 A 365 TYR ILE THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU SEQRES 28 A 365 ARG MET ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU SEQRES 29 A 365 LEU SEQRES 1 B 365 GLY SER MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU SEQRES 2 B 365 HIS LEU GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN SEQRES 3 B 365 ILE GLY PHE SER THR LEU THR MET GLU SER ASP LYS PHE SEQRES 4 B 365 ILE CYS ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL SEQRES 5 B 365 VAL ILE ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG SEQRES 6 B 365 ARG PRO ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SEQRES 7 B 365 SER LYS VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN SEQRES 8 B 365 ILE PHE ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS SEQRES 9 B 365 THR MET THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER SEQRES 10 B 365 LEU ASN THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR SEQRES 11 B 365 HIS TRP SER MET GLU GLY GLU SER GLN PRO VAL LYS MET SEQRES 12 B 365 PHE ASP ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE SEQRES 13 B 365 ASN TYR ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU SEQRES 14 B 365 THR GLY ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA SEQRES 15 B 365 MET GLN LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO SEQRES 16 B 365 ILE GLU GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET SEQRES 17 B 365 GLU GLY ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA SEQRES 18 B 365 VAL ARG GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU SEQRES 19 B 365 VAL GLY THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS SEQRES 20 B 365 LYS ALA VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN SEQRES 21 B 365 ASP PHE PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP SEQRES 22 B 365 VAL VAL PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU SEQRES 23 B 365 TYR ASP LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG SEQRES 24 B 365 ILE SER GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU SEQRES 25 B 365 ALA THR ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN SEQRES 26 B 365 VAL LEU SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO SEQRES 27 B 365 TYR ILE THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU SEQRES 28 B 365 ARG MET ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU SEQRES 29 B 365 LEU SEQRES 1 E 10 GLU THR LEU LEU ASP LEU ASP PHE ASP PRO SEQRES 1 F 10 GLU THR LEU LEU ASP LEU ASP PHE ASP PRO SEQRES 1 G 10 GLU THR LEU LEU ASP LEU ASP PHE ASP PRO SEQRES 1 H 10 GLU THR LEU LEU ASP LEU ASP PHE ASP PRO HET GOL A 401 6 HET GOL A 402 6 HET GOL B 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 HOH *803(H2 O) HELIX 1 AA1 GLN A 16 GLY A 19 5 4 HELIX 2 AA2 ASN A 21 ILE A 25 5 5 HELIX 3 AA3 HIS A 145 ALA A 149 5 5 HELIX 4 AA4 ASN A 333 VAL A 341 1 9 HELIX 5 AA5 ASN A 344 ASN A 355 1 12 HELIX 6 AA6 GLN B 16 GLY B 19 5 4 HELIX 7 AA7 ASN B 21 ILE B 25 5 5 HELIX 8 AA8 HIS B 145 ALA B 149 5 5 HELIX 9 AA9 ASN B 333 VAL B 341 1 9 HELIX 10 AB1 ASN B 344 ASN B 355 1 12 SHEET 1 AA1 4 ILE A 7 GLN A 14 0 SHEET 2 AA1 4 GLN A 323 VAL A 329 -1 O VAL A 324 N HIS A 12 SHEET 3 AA1 4 GLY A 314 ASN A 319 -1 N GLY A 317 O LEU A 325 SHEET 4 AA1 4 ILE A 303 HIS A 309 -1 N ALA A 307 O ILE A 316 SHEET 1 AA2 4 LEU A 30 SER A 34 0 SHEET 2 AA2 4 PHE A 37 VAL A 44 -1 O CYS A 39 N THR A 31 SHEET 3 AA2 4 GLN A 47 ASP A 54 -1 O GLN A 49 N GLU A 42 SHEET 4 AA2 4 ILE A 62 PRO A 65 -1 O ILE A 62 N ILE A 52 SHEET 1 AA3 4 SER A 70 MET A 73 0 SHEET 2 AA3 4 VAL A 79 ALA A 84 -1 O ALA A 81 N ILE A 72 SHEET 3 AA3 4 THR A 87 ASN A 92 -1 O GLN A 89 N LEU A 82 SHEET 4 AA3 4 SER A 97 THR A 103 -1 O HIS A 102 N LEU A 88 SHEET 1 AA4 4 VAL A 108 TRP A 113 0 SHEET 2 AA4 4 THR A 118 THR A 123 -1 O ALA A 120 N LYS A 112 SHEET 3 AA4 4 ALA A 126 SER A 131 -1 O TYR A 128 N LEU A 121 SHEET 4 AA4 4 VAL A 139 ASP A 143 -1 O MET A 141 N VAL A 127 SHEET 1 AA5 4 GLN A 152 THR A 158 0 SHEET 2 AA5 4 TRP A 164 GLN A 173 -1 O LEU A 166 N ARG A 157 SHEET 3 AA5 4 ARG A 176 SER A 185 -1 O VAL A 178 N SER A 171 SHEET 4 AA5 4 VAL A 190 GLU A 195 -1 O ILE A 194 N MET A 181 SHEET 1 AA6 4 ALA A 198 PHE A 204 0 SHEET 2 AA6 4 SER A 213 GLY A 222 -1 O LEU A 215 N ALA A 202 SHEET 3 AA6 4 GLY A 225 GLU A 232 -1 O LYS A 227 N VAL A 220 SHEET 4 AA6 4 LYS A 246 VAL A 250 -1 O VAL A 248 N LEU A 228 SHEET 1 AA7 4 PRO A 261 SER A 267 0 SHEET 2 AA7 4 VAL A 272 THR A 277 -1 O PHE A 274 N GLN A 265 SHEET 3 AA7 4 TYR A 281 ASP A 286 -1 O TYR A 285 N VAL A 273 SHEET 4 AA7 4 CYS A 292 ARG A 297 -1 O ILE A 293 N LEU A 284 SHEET 1 AA8 4 ILE B 7 GLN B 14 0 SHEET 2 AA8 4 GLN B 323 VAL B 329 -1 O VAL B 324 N HIS B 12 SHEET 3 AA8 4 GLY B 314 ASN B 319 -1 N GLY B 317 O LEU B 325 SHEET 4 AA8 4 ILE B 303 HIS B 309 -1 N ALA B 307 O ILE B 316 SHEET 1 AA9 4 LEU B 30 SER B 34 0 SHEET 2 AA9 4 PHE B 37 VAL B 44 -1 O CYS B 39 N THR B 31 SHEET 3 AA9 4 GLN B 47 ASP B 54 -1 O ILE B 53 N ILE B 38 SHEET 4 AA9 4 ILE B 62 PRO B 65 -1 O ILE B 62 N ILE B 52 SHEET 1 AB1 4 SER B 70 MET B 73 0 SHEET 2 AB1 4 VAL B 79 ALA B 84 -1 O ALA B 81 N ILE B 72 SHEET 3 AB1 4 THR B 87 ASN B 92 -1 O GLN B 89 N LEU B 82 SHEET 4 AB1 4 SER B 97 THR B 103 -1 O HIS B 102 N LEU B 88 SHEET 1 AB2 4 VAL B 108 TRP B 113 0 SHEET 2 AB2 4 THR B 118 THR B 123 -1 O ALA B 120 N LYS B 112 SHEET 3 AB2 4 ALA B 126 SER B 131 -1 O TRP B 130 N VAL B 119 SHEET 4 AB2 4 VAL B 139 ASP B 143 -1 O PHE B 142 N VAL B 127 SHEET 1 AB3 4 GLN B 152 THR B 158 0 SHEET 2 AB3 4 TRP B 164 GLN B 173 -1 O ILE B 170 N GLN B 152 SHEET 3 AB3 4 ARG B 176 SER B 185 -1 O VAL B 178 N SER B 171 SHEET 4 AB3 4 VAL B 190 GLU B 195 -1 O ILE B 194 N MET B 181 SHEET 1 AB4 4 ALA B 198 PHE B 204 0 SHEET 2 AB4 4 SER B 213 GLY B 222 -1 O ALA B 219 N ALA B 198 SHEET 3 AB4 4 GLY B 225 GLU B 232 -1 O ILE B 231 N PHE B 216 SHEET 4 AB4 4 LYS B 246 VAL B 250 -1 O VAL B 248 N LEU B 228 SHEET 1 AB5 4 PRO B 261 SER B 267 0 SHEET 2 AB5 4 VAL B 272 THR B 277 -1 O PHE B 274 N GLN B 265 SHEET 3 AB5 4 TYR B 281 ASP B 286 -1 O TYR B 285 N VAL B 273 SHEET 4 AB5 4 CYS B 292 ARG B 297 -1 O ASN B 296 N ILE B 282 SITE 1 AC1 7 HIS A 102 MET A 104 THR A 105 ASP A 106 SITE 2 AC1 7 TYR A 128 HOH A 526 HOH A 534 SITE 1 AC2 5 LYS A 278 PHE A 304 HOH A 529 ASP B 346 SITE 2 AC2 5 HOH B 520 SITE 1 AC3 6 ASP A 346 PHE B 27 LYS B 278 PHE B 304 SITE 2 AC3 6 HOH B 502 HOH B 657 CRYST1 139.967 134.110 78.012 90.00 115.07 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007145 0.000000 0.003342 0.00000 SCALE2 0.000000 0.007457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014151 0.00000