PDB Short entry for 5MJ0 HEADER IMMUNE SYSTEM 29-NOV-16 5MJ0 TITLE EXTRACELLULAR DOMAIN OF HUMAN CD83 - CUBIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD83 ANTIGEN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HCD83,B-CELL ACTIVATION PROTEIN,CELL SURFACE PROTEIN HB15; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THE FIRST FOUR RESIDUES (GSPG) ARE NON-NATIVE RESIDUES COMPND 8 OF THE LINKER WHICH REMAINS AFTER THE GST-TAG WAS CLEAVED OFF. THE COMPND 9 FIRST AND LAST TWO RESIDUES AS WELL AS THE CENTRAL REGION WERE NOT COMPND 10 VISIBLE IN THE ELECTRON DENSITY MAPS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: DENDRITIC CELLS; SOURCE 6 GENE: CD83; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS DENDRITIC CELL, RECEPTOR, IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.KLINGL,C.EGERER-SIEBER,B.SCHMID,Y.A.MULLER REVDAT 4 07-MAR-18 5MJ0 1 SOURCE REVDAT 3 06-SEP-17 5MJ0 1 REMARK REVDAT 2 26-APR-17 5MJ0 1 JRNL REVDAT 1 29-MAR-17 5MJ0 0 JRNL AUTH C.S.HEILINGLOH,S.KLINGL,C.EGERER-SIEBER,B.SCHMID,S.WEILER, JRNL AUTH 2 P.MUHL-ZURBES,J.HOFMANN,J.D.STUMP,H.STICHT,M.KUMMER, JRNL AUTH 3 A.STEINKASSERER,Y.A.MULLER JRNL TITL CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE HUMAN JRNL TITL 2 DENDRITIC CELL SURFACE MARKER CD83. JRNL REF J. MOL. BIOL. V. 429 1227 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28315353 JRNL DOI 10.1016/J.JMB.2017.03.009 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 4982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3014 - 4.0281 1.00 2430 128 0.2179 0.2436 REMARK 3 2 4.0281 - 3.1974 1.00 2302 122 0.3115 0.3419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 103.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1250 REMARK 3 ANGLE : 1.345 1705 REMARK 3 CHIRALITY : 0.053 199 REMARK 3 PLANARITY : 0.007 218 REMARK 3 DIHEDRAL : 13.733 468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918007 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4984 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 1.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MICROLITER PROTEIN (21 MG/ML IN 25 REMARK 280 MM TRIS-HCL (PH 7.2) BUFFER) WERE MIXED WITH 0.2 MICROLITER REMARK 280 RESERVOIR SOLUTION (0.2 M L-PROLINE, 0.1 M HEPES (PH 7.5), 24% W/ REMARK 280 V PEG 1500) AND EQUILIBRATED AGAINST 70 MICROLITER OF RESERVOIR REMARK 280 SOLUTION CRYSTALS APPEARED AFTER ~ 10 MONTHS, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.78200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.78200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.78200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.78200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 74.78200 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 74.78200 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 74.78200 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 74.78200 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 74.78200 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 74.78200 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 74.78200 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 74.78200 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 112.17300 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 37.39100 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 112.17300 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 112.17300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 37.39100 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 112.17300 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.39100 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 37.39100 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 37.39100 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 37.39100 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 112.17300 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 37.39100 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 112.17300 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 112.17300 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 37.39100 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 112.17300 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 112.17300 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 37.39100 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 37.39100 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 37.39100 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 37.39100 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 112.17300 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 112.17300 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 112.17300 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 74.78200 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 74.78200 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 74.78200 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 74.78200 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 74.78200 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 74.78200 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 74.78200 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 74.78200 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 74.78200 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 74.78200 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 74.78200 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 74.78200 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 74.78200 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 37.39100 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 112.17300 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 37.39100 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 37.39100 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 112.17300 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 37.39100 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 112.17300 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 112.17300 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 112.17300 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 112.17300 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 37.39100 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 112.17300 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 37.39100 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 37.39100 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 112.17300 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 37.39100 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 37.39100 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 112.17300 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 112.17300 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 112.17300 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 37.39100 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 112.17300 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 37.39100 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 112.17300 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 37.39100 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 37.39100 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 37.39100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 GLU A 54 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 GLU A 57 REMARK 465 GLU A 58 REMARK 465 ARG A 59 REMARK 465 MET A 60 REMARK 465 GLU A 61 REMARK 465 THR A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 HIS A 67 REMARK 465 LEU A 68 REMARK 465 ARG A 69 REMARK 465 GLY A 70 REMARK 465 GLN A 71 REMARK 465 HIS A 72 REMARK 465 TYR A 73 REMARK 465 HIS A 74 REMARK 465 GLN A 75 REMARK 465 LYS A 76 REMARK 465 GLY A 77 REMARK 465 GLN A 78 REMARK 465 ASN A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 PHE A 82 REMARK 465 ASP A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 PRO A 130 REMARK 465 ALA A 131 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 PRO B 18 REMARK 465 GLU B 54 REMARK 465 GLY B 55 REMARK 465 GLY B 56 REMARK 465 GLU B 57 REMARK 465 GLU B 58 REMARK 465 ARG B 59 REMARK 465 MET B 60 REMARK 465 GLU B 61 REMARK 465 THR B 62 REMARK 465 PRO B 63 REMARK 465 GLN B 64 REMARK 465 GLU B 65 REMARK 465 ASP B 66 REMARK 465 HIS B 67 REMARK 465 LEU B 68 REMARK 465 ARG B 69 REMARK 465 GLY B 70 REMARK 465 GLN B 71 REMARK 465 HIS B 72 REMARK 465 TYR B 73 REMARK 465 HIS B 74 REMARK 465 GLN B 75 REMARK 465 LYS B 76 REMARK 465 GLY B 77 REMARK 465 GLN B 78 REMARK 465 ASN B 79 REMARK 465 GLY B 80 REMARK 465 SER B 81 REMARK 465 PHE B 82 REMARK 465 ASP B 83 REMARK 465 ALA B 84 REMARK 465 PRO B 85 REMARK 465 ASN B 86 REMARK 465 ALA B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 34 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 -9.40 76.44 REMARK 500 SER B 28 -9.80 75.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MIX RELATED DB: PDB REMARK 900 5MIX IS THE SAME PROTEIN, BUT A DIFFERENT CRYSTAL FORM (SPACE GROUP REMARK 900 P321) DBREF 5MJ0 A 17 131 UNP Q01151 CD83_HUMAN 17 131 DBREF 5MJ0 B 17 131 UNP Q01151 CD83_HUMAN 17 131 SEQADV 5MJ0 GLY A 16 UNP Q01151 EXPRESSION TAG SEQADV 5MJ0 SER A 17 UNP Q01151 ALA 17 EXPRESSION TAG SEQADV 5MJ0 GLY A 19 UNP Q01151 ALA 19 EXPRESSION TAG SEQADV 5MJ0 SER A 27 UNP Q01151 CYS 27 ENGINEERED MUTATION SEQADV 5MJ0 SER A 100 UNP Q01151 CYS 100 ENGINEERED MUTATION SEQADV 5MJ0 SER A 129 UNP Q01151 CYS 129 ENGINEERED MUTATION SEQADV 5MJ0 GLY B 16 UNP Q01151 EXPRESSION TAG SEQADV 5MJ0 SER B 17 UNP Q01151 ALA 17 EXPRESSION TAG SEQADV 5MJ0 GLY B 19 UNP Q01151 ALA 19 EXPRESSION TAG SEQADV 5MJ0 SER B 27 UNP Q01151 CYS 27 ENGINEERED MUTATION SEQADV 5MJ0 SER B 100 UNP Q01151 CYS 100 ENGINEERED MUTATION SEQADV 5MJ0 SER B 129 UNP Q01151 CYS 129 ENGINEERED MUTATION SEQRES 1 A 116 GLY SER PRO GLY THR PRO GLU VAL LYS VAL ALA SER SER SEQRES 2 A 116 GLU ASP VAL ASP LEU PRO CYS THR ALA PRO TRP ASP PRO SEQRES 3 A 116 GLN VAL PRO TYR THR VAL SER TRP VAL LYS LEU LEU GLU SEQRES 4 A 116 GLY GLY GLU GLU ARG MET GLU THR PRO GLN GLU ASP HIS SEQRES 5 A 116 LEU ARG GLY GLN HIS TYR HIS GLN LYS GLY GLN ASN GLY SEQRES 6 A 116 SER PHE ASP ALA PRO ASN GLU ARG PRO TYR SER LEU LYS SEQRES 7 A 116 ILE ARG ASN THR THR SER SER ASN SER GLY THR TYR ARG SEQRES 8 A 116 CYS THR LEU GLN ASP PRO ASP GLY GLN ARG ASN LEU SER SEQRES 9 A 116 GLY LYS VAL ILE LEU ARG VAL THR GLY SER PRO ALA SEQRES 1 B 116 GLY SER PRO GLY THR PRO GLU VAL LYS VAL ALA SER SER SEQRES 2 B 116 GLU ASP VAL ASP LEU PRO CYS THR ALA PRO TRP ASP PRO SEQRES 3 B 116 GLN VAL PRO TYR THR VAL SER TRP VAL LYS LEU LEU GLU SEQRES 4 B 116 GLY GLY GLU GLU ARG MET GLU THR PRO GLN GLU ASP HIS SEQRES 5 B 116 LEU ARG GLY GLN HIS TYR HIS GLN LYS GLY GLN ASN GLY SEQRES 6 B 116 SER PHE ASP ALA PRO ASN GLU ARG PRO TYR SER LEU LYS SEQRES 7 B 116 ILE ARG ASN THR THR SER SER ASN SER GLY THR TYR ARG SEQRES 8 B 116 CYS THR LEU GLN ASP PRO ASP GLY GLN ARG ASN LEU SER SEQRES 9 B 116 GLY LYS VAL ILE LEU ARG VAL THR GLY SER PRO ALA HELIX 1 AA1 THR A 98 SER A 102 5 5 HELIX 2 AA2 THR B 98 SER B 102 5 5 SHEET 1 AA1 8 GLU A 22 ALA A 26 0 SHEET 2 AA1 8 ASN A 117 THR A 127 1 O ILE A 123 N VAL A 23 SHEET 3 AA1 8 GLY A 103 GLN A 110 -1 N LEU A 109 O LEU A 118 SHEET 4 AA1 8 THR A 46 LEU A 52 -1 N LEU A 52 O THR A 104 SHEET 5 AA1 8 THR B 46 LEU B 53 -1 O LEU B 53 N TRP A 49 SHEET 6 AA1 8 GLY B 103 GLN B 110 -1 O ARG B 106 N VAL B 50 SHEET 7 AA1 8 ASN B 117 THR B 127 -1 O VAL B 122 N TYR B 105 SHEET 8 AA1 8 GLU B 22 ALA B 26 1 N VAL B 23 O ILE B 123 SHEET 1 AA2 2 VAL A 31 LEU A 33 0 SHEET 2 AA2 2 LEU A 92 ILE A 94 -1 O ILE A 94 N VAL A 31 SHEET 1 AA3 2 VAL B 31 LEU B 33 0 SHEET 2 AA3 2 LEU B 92 ILE B 94 -1 O LEU B 92 N LEU B 33 SSBOND 1 CYS A 35 CYS A 107 1555 1555 2.04 SSBOND 2 CYS B 35 CYS B 107 1555 1555 2.04 CRYST1 149.564 149.564 149.564 90.00 90.00 90.00 I 41 3 2 96 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006686 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006686 0.00000