PDB Short entry for 5MJ1 HEADER IMMUNE SYSTEM 29-NOV-16 5MJ1 TITLE EXTRACELLULAR DOMAIN OF HUMAN CD83 - RHOMBOHEDRAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD83 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HCD83,B-CELL ACTIVATION PROTEIN,CELL SURFACE PROTEIN HB15; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THE FIRST FOUR RESIDUES (GSPG) ARE NON-NATIVE RESIDUES COMPND 8 OF THE LINKER WHICH REMAIN AFTER THE GST-TAG WAS CLEAVED OFF. THE COMPND 9 THIRD RESIDUE (P) WAS MODELED AS ALANINE DUE TO MISSING ELECTRON COMPND 10 DENSITY. THE FIRST AND LAST TWO RESIDUES AS WELL AS THE CENTRAL COMPND 11 REGION WERE NOT VISIBLE IN THE ELECTRON DENSITY MAPS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: DENDRITIC CELLS; SOURCE 6 GENE: CD83; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS DENDRITIC CELL, RECEPTOR, IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.KLINGL,C.EGERER-SIEBER,B.SCHMID,S.WEILER,Y.A.MULLER REVDAT 4 07-MAR-18 5MJ1 1 SOURCE REVDAT 3 06-SEP-17 5MJ1 1 REMARK REVDAT 2 26-APR-17 5MJ1 1 JRNL REVDAT 1 29-MAR-17 5MJ1 0 JRNL AUTH C.S.HEILINGLOH,S.KLINGL,C.EGERER-SIEBER,B.SCHMID,S.WEILER, JRNL AUTH 2 P.MUHL-ZURBES,J.HOFMANN,J.D.STUMP,H.STICHT,M.KUMMER, JRNL AUTH 3 A.STEINKASSERER,Y.A.MULLER JRNL TITL CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE HUMAN JRNL TITL 2 DENDRITIC CELL SURFACE MARKER CD83. JRNL REF J. MOL. BIOL. V. 429 1227 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28315353 JRNL DOI 10.1016/J.JMB.2017.03.009 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4063 - 2.5962 1.00 3181 168 0.1482 0.1944 REMARK 3 2 2.5962 - 2.0608 1.00 3071 162 0.2117 0.2377 REMARK 3 3 2.0608 - 1.8003 1.00 3030 159 0.2388 0.2858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 680 REMARK 3 ANGLE : 1.137 934 REMARK 3 CHIRALITY : 0.043 110 REMARK 3 PLANARITY : 0.006 121 REMARK 3 DIHEDRAL : 11.445 259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 18:27) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5364 41.6772 48.1540 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.3158 REMARK 3 T33: 0.2784 T12: 0.0103 REMARK 3 T13: -0.0225 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 7.8771 L22: 2.6112 REMARK 3 L33: 8.3418 L12: -1.7578 REMARK 3 L13: -0.1028 L23: -4.1284 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.6423 S13: -0.6696 REMARK 3 S21: -0.9292 S22: -0.0762 S23: -0.7428 REMARK 3 S31: 0.3647 S32: 0.3511 S33: 0.0447 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 28:53) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1624 45.6381 55.6976 REMARK 3 T TENSOR REMARK 3 T11: 0.1861 T22: 0.1918 REMARK 3 T33: 0.1416 T12: -0.0270 REMARK 3 T13: -0.0203 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 3.6267 L22: 5.2458 REMARK 3 L33: 5.5093 L12: -1.2695 REMARK 3 L13: -1.8624 L23: 4.3121 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.0896 S13: -0.1310 REMARK 3 S21: 0.2172 S22: 0.1532 S23: -0.0377 REMARK 3 S31: 0.1389 S32: 0.0053 S33: -0.0694 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 54:89) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0041 43.9016 60.1441 REMARK 3 T TENSOR REMARK 3 T11: 0.4156 T22: 0.3313 REMARK 3 T33: 0.2695 T12: 0.1756 REMARK 3 T13: -0.0011 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 5.1801 L22: 4.0888 REMARK 3 L33: 5.7207 L12: 4.5770 REMARK 3 L13: 2.9401 L23: 2.9773 REMARK 3 S TENSOR REMARK 3 S11: 0.6342 S12: -0.0099 S13: -0.6535 REMARK 3 S21: 0.3511 S22: -0.8013 S23: -0.0350 REMARK 3 S31: 1.1675 S32: 1.1913 S33: 0.0508 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 90:106) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7524 36.8115 51.0756 REMARK 3 T TENSOR REMARK 3 T11: 0.2352 T22: 0.2210 REMARK 3 T33: 0.3351 T12: -0.0399 REMARK 3 T13: -0.0271 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 7.0373 L22: 8.0029 REMARK 3 L33: 7.9698 L12: -2.8126 REMARK 3 L13: -2.7307 L23: 3.8440 REMARK 3 S TENSOR REMARK 3 S11: -0.2267 S12: 0.2244 S13: -0.7930 REMARK 3 S21: 0.1998 S22: 0.2094 S23: 0.0561 REMARK 3 S31: 0.6268 S32: 0.0670 S33: -0.0075 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 107:114) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6512 51.9491 56.4098 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.5190 REMARK 3 T33: 0.3823 T12: 0.0247 REMARK 3 T13: -0.0057 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.9132 L22: 4.5720 REMARK 3 L33: 5.6400 L12: -4.6931 REMARK 3 L13: -5.2123 L23: 5.0588 REMARK 3 S TENSOR REMARK 3 S11: 0.4552 S12: -0.0657 S13: -0.1489 REMARK 3 S21: -0.2222 S22: -0.5598 S23: 0.9676 REMARK 3 S31: -0.4803 S32: -1.3010 S33: 0.0584 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 115:123) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5202 52.3191 51.3387 REMARK 3 T TENSOR REMARK 3 T11: 0.2532 T22: 0.2795 REMARK 3 T33: 0.2514 T12: -0.0243 REMARK 3 T13: -0.0239 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.2871 L22: 3.7447 REMARK 3 L33: 3.6613 L12: 0.0867 REMARK 3 L13: -1.9625 L23: 2.6151 REMARK 3 S TENSOR REMARK 3 S11: 0.1748 S12: 0.1338 S13: 0.3026 REMARK 3 S21: -0.4330 S22: -0.0538 S23: 0.5346 REMARK 3 S31: -0.2310 S32: -0.3659 S33: -0.1224 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 124:129) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2773 33.9175 46.4355 REMARK 3 T TENSOR REMARK 3 T11: 0.4863 T22: 0.5167 REMARK 3 T33: 0.6334 T12: 0.0759 REMARK 3 T13: 0.0881 T23: -0.1397 REMARK 3 L TENSOR REMARK 3 L11: 1.6224 L22: 5.9977 REMARK 3 L33: 7.6249 L12: 0.3092 REMARK 3 L13: 0.6542 L23: -2.1715 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.8542 S13: -1.0420 REMARK 3 S21: -1.0841 S22: 0.0275 S23: -2.5177 REMARK 3 S31: 1.1892 S32: 1.6583 S33: 0.0233 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MICROLITER PROTEIN (39 MG/ML IN REMARK 280 ULTRAPURE WATER) MIXED WITH 0.4 MICROLITER RESERVOIR SOLUTION REMARK 280 (0.2 M DL-MALIC ACID (PH 7.0), 20% W/V PEG 3350) WAS REMARK 280 EQUILIBRATED AGAINST 70 MICROLITER OF RESERVOIR SOLUTION. REMARK 280 CRYSTALS APPEARED AFTER ~ 13 MONTHS, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 31.40150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 18.12966 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.95333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 31.40150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 18.12966 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.95333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 31.40150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 18.12966 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.95333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 31.40150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 18.12966 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.95333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 31.40150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 18.12966 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.95333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 31.40150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 18.12966 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.95333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 36.25933 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.90667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 36.25933 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.90667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 36.25933 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.90667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 36.25933 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.90667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 36.25933 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.90667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 36.25933 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.90667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 317 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 GLU A 57 REMARK 465 GLU A 58 REMARK 465 ARG A 59 REMARK 465 MET A 60 REMARK 465 GLU A 61 REMARK 465 THR A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 HIS A 67 REMARK 465 LEU A 68 REMARK 465 ARG A 69 REMARK 465 GLY A 70 REMARK 465 GLN A 71 REMARK 465 HIS A 72 REMARK 465 TYR A 73 REMARK 465 HIS A 74 REMARK 465 GLN A 75 REMARK 465 LYS A 76 REMARK 465 GLY A 77 REMARK 465 GLN A 78 REMARK 465 ASN A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 PHE A 82 REMARK 465 ASP A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 PRO A 130 REMARK 465 ALA A 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 18 CG CD REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 129 O HOH A 301 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 18 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 -7.95 75.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MIX RELATED DB: PDB REMARK 900 5MIX IS THE SAME PROTEIN, BUT A DIFFERENT CRYSTAL FORM (P321) REMARK 900 RELATED ID: 5MJ0 RELATED DB: PDB REMARK 900 5MJ0 IS THE SAME PROTEIN, BUT A DIFFERENT CRYSTAL FORM (I4_1 3 2) DBREF 5MJ1 A 17 131 UNP Q01151 CD83_HUMAN 17 131 SEQADV 5MJ1 GLY A 16 UNP Q01151 EXPRESSION TAG SEQADV 5MJ1 SER A 17 UNP Q01151 ALA 17 EXPRESSION TAG SEQADV 5MJ1 GLY A 19 UNP Q01151 ALA 19 EXPRESSION TAG SEQADV 5MJ1 SER A 27 UNP Q01151 CYS 27 ENGINEERED MUTATION SEQADV 5MJ1 SER A 100 UNP Q01151 CYS 100 ENGINEERED MUTATION SEQADV 5MJ1 SER A 129 UNP Q01151 CYS 129 ENGINEERED MUTATION SEQRES 1 A 116 GLY SER PRO GLY THR PRO GLU VAL LYS VAL ALA SER SER SEQRES 2 A 116 GLU ASP VAL ASP LEU PRO CYS THR ALA PRO TRP ASP PRO SEQRES 3 A 116 GLN VAL PRO TYR THR VAL SER TRP VAL LYS LEU LEU GLU SEQRES 4 A 116 GLY GLY GLU GLU ARG MET GLU THR PRO GLN GLU ASP HIS SEQRES 5 A 116 LEU ARG GLY GLN HIS TYR HIS GLN LYS GLY GLN ASN GLY SEQRES 6 A 116 SER PHE ASP ALA PRO ASN GLU ARG PRO TYR SER LEU LYS SEQRES 7 A 116 ILE ARG ASN THR THR SER SER ASN SER GLY THR TYR ARG SEQRES 8 A 116 CYS THR LEU GLN ASP PRO ASP GLY GLN ARG ASN LEU SER SEQRES 9 A 116 GLY LYS VAL ILE LEU ARG VAL THR GLY SER PRO ALA HET PEG A 201 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 PEG C4 H10 O3 FORMUL 3 HOH *58(H2 O) HELIX 1 AA1 THR A 98 SER A 102 5 5 SHEET 1 AA1 4 GLU A 22 VAL A 25 0 SHEET 2 AA1 4 ASN A 117 VAL A 126 1 O ILE A 123 N VAL A 23 SHEET 3 AA1 4 GLY A 103 GLN A 110 -1 N LEU A 109 O LEU A 118 SHEET 4 AA1 4 THR A 46 LEU A 52 -1 N LEU A 52 O THR A 104 SHEET 1 AA2 2 VAL A 31 LEU A 33 0 SHEET 2 AA2 2 LEU A 92 ILE A 94 -1 O LEU A 92 N LEU A 33 SSBOND 1 CYS A 35 CYS A 107 1555 1555 2.05 SITE 1 AC1 2 TRP A 39 ARG A 88 CRYST1 62.803 62.803 134.860 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015923 0.009193 0.000000 0.00000 SCALE2 0.000000 0.018386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007415 0.00000