PDB Short entry for 5MJ2 HEADER IMMUNE SYSTEM 29-NOV-16 5MJ2 TITLE EXTRACELLULAR DOMAIN OF HUMAN CD83 - RHOMBOHEDRAL CRYSTAL FORM AFTER TITLE 2 UV-RIP (S-SAD DATA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD83 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HCD83,B-CELL ACTIVATION PROTEIN,CELL SURFACE PROTEIN HB15; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THE FIRST FOUR RESIDUES (GSPG) ARE NON-NATIVE RESIDUES COMPND 8 OF THE LINKER WHICH REMAINS AFTER THE GST-TAG WAS CLEAVED OFF. THE COMPND 9 THIRD RESIDUE (P) WAS MODELED AS ALANINE DUE TO MISSING ELECTRON COMPND 10 DENSITY. THE FIRST AND LAST TWO RESIDUES AS WELL AS THE CENTRAL COMPND 11 REGION WERE NOT VISIBLE IN THE ELECTRON DENSITY MAPS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: DENDRITIC CELLS; SOURCE 6 GENE: CD83; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS DENDRITIC CELL, RECEPTOR, IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.KLINGL,C.EGERER-SIEBER,B.SCHMID,S.WEILER,Y.A.MULLER REVDAT 4 07-MAR-18 5MJ2 1 SOURCE REVDAT 3 06-SEP-17 5MJ2 1 REMARK REVDAT 2 26-APR-17 5MJ2 1 JRNL REVDAT 1 29-MAR-17 5MJ2 0 JRNL AUTH C.S.HEILINGLOH,S.KLINGL,C.EGERER-SIEBER,B.SCHMID,S.WEILER, JRNL AUTH 2 P.MUHL-ZURBES,J.HOFMANN,J.D.STUMP,H.STICHT,M.KUMMER, JRNL AUTH 3 A.STEINKASSERER,Y.A.MULLER JRNL TITL CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE HUMAN JRNL TITL 2 DENDRITIC CELL SURFACE MARKER CD83. JRNL REF J. MOL. BIOL. V. 429 1227 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28315353 JRNL DOI 10.1016/J.JMB.2017.03.009 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2211 - 3.3822 1.00 2676 142 0.1274 0.1840 REMARK 3 2 3.3822 - 2.6847 1.00 2674 143 0.1722 0.2057 REMARK 3 3 2.6847 - 2.3453 1.00 2664 133 0.1828 0.2471 REMARK 3 4 2.3453 - 2.1309 1.00 2654 140 0.1935 0.2359 REMARK 3 5 2.1309 - 1.9782 1.00 2660 144 0.2280 0.2448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 673 REMARK 3 ANGLE : 1.067 926 REMARK 3 CHIRALITY : 0.043 110 REMARK 3 PLANARITY : 0.005 119 REMARK 3 DIHEDRAL : 11.569 259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 18:24) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3849 45.7002 47.4216 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.5595 REMARK 3 T33: 0.3573 T12: -0.0402 REMARK 3 T13: -0.0070 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 3.0457 L22: 5.6038 REMARK 3 L33: 4.0550 L12: -4.1228 REMARK 3 L13: 2.9095 L23: -4.0646 REMARK 3 S TENSOR REMARK 3 S11: 0.4703 S12: 1.6869 S13: -0.2840 REMARK 3 S21: -0.8884 S22: -0.6354 S23: -0.6892 REMARK 3 S31: 0.0707 S32: 1.4005 S33: 0.0595 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 25:38) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6594 39.5174 54.7491 REMARK 3 T TENSOR REMARK 3 T11: 0.3849 T22: 0.3200 REMARK 3 T33: 0.3833 T12: -0.0067 REMARK 3 T13: -0.0974 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 4.4327 L22: 7.0334 REMARK 3 L33: 4.0541 L12: -0.7632 REMARK 3 L13: -1.5794 L23: 0.9397 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.1997 S13: -0.5076 REMARK 3 S21: 0.5453 S22: 0.1084 S23: -0.3831 REMARK 3 S31: 0.1624 S32: 0.0439 S33: -0.1018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 39:88) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2292 47.7263 57.1002 REMARK 3 T TENSOR REMARK 3 T11: 0.2829 T22: 0.3613 REMARK 3 T33: 0.2775 T12: -0.0227 REMARK 3 T13: 0.0110 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.4587 L22: 3.4856 REMARK 3 L33: 3.8765 L12: -0.6406 REMARK 3 L13: 0.8300 L23: 2.8459 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.0767 S13: -0.1284 REMARK 3 S21: 0.2194 S22: 0.0701 S23: 0.1148 REMARK 3 S31: 0.1040 S32: 0.2384 S33: -0.0679 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 89:98) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6277 36.3972 56.4688 REMARK 3 T TENSOR REMARK 3 T11: 0.4365 T22: 0.3029 REMARK 3 T33: 0.5175 T12: -0.0031 REMARK 3 T13: -0.0294 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 5.8173 L22: 3.2345 REMARK 3 L33: 5.8056 L12: -2.8781 REMARK 3 L13: -2.6848 L23: 2.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.4113 S12: -0.2306 S13: -1.3974 REMARK 3 S21: 0.9247 S22: 0.2000 S23: 0.4242 REMARK 3 S31: 1.0941 S32: 0.0277 S33: 0.1697 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 99:110) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3263 43.2500 49.4903 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.3726 REMARK 3 T33: 0.3417 T12: -0.0329 REMARK 3 T13: -0.0487 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.3554 L22: 4.3567 REMARK 3 L33: 3.8313 L12: -1.3467 REMARK 3 L13: -1.4881 L23: 2.1728 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.4024 S13: -0.5204 REMARK 3 S21: -0.3323 S22: -0.0458 S23: 0.4045 REMARK 3 S31: 0.1896 S32: -0.1321 S33: 0.0200 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 111:120) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6443 55.4542 55.9150 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.4660 REMARK 3 T33: 0.4910 T12: -0.0236 REMARK 3 T13: 0.0027 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 6.1794 L22: 4.8442 REMARK 3 L33: 6.2054 L12: 0.5073 REMARK 3 L13: -1.1007 L23: -1.2634 REMARK 3 S TENSOR REMARK 3 S11: 0.2326 S12: -0.3387 S13: 0.4803 REMARK 3 S21: -0.1399 S22: 0.5512 S23: 0.5729 REMARK 3 S31: -0.3310 S32: -0.6619 S33: -0.7067 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 121:129) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8879 38.2719 46.9189 REMARK 3 T TENSOR REMARK 3 T11: 0.4247 T22: 0.3660 REMARK 3 T33: 0.4601 T12: 0.0020 REMARK 3 T13: 0.0357 T23: -0.0701 REMARK 3 L TENSOR REMARK 3 L11: 7.7521 L22: 4.0580 REMARK 3 L33: 7.7599 L12: -1.8043 REMARK 3 L13: 0.0599 L23: -2.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.2956 S13: -0.8220 REMARK 3 S21: -0.7463 S22: -0.1924 S23: -1.2723 REMARK 3 S31: 0.7808 S32: 0.6958 S33: 0.1137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.800042 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 45.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MICROLITER PROTEIN (39 MG/ML IN REMARK 280 ULTRAPURE WATER) AND 0.4 MICROLITER RESERVOIR SOLUTION (0.2 M DL- REMARK 280 MALIC ACID (PH 7.0), 20% W/V PEG 3350) WERE MIXED AND REMARK 280 EQUILIBRATED AGAINST 70 MICROLITER OF RESERVOIR SOLUTION REMARK 280 CRYSTALS APPEARED AFTER ~13 MONTHS, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 31.48900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 18.18018 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.20933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 31.48900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 18.18018 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.20933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 31.48900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 18.18018 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.20933 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 31.48900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 18.18018 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.20933 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 31.48900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 18.18018 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.20933 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 31.48900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 18.18018 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.20933 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 36.36037 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.41867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 36.36037 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.41867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 36.36037 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 90.41867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 36.36037 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.41867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 36.36037 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 90.41867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 36.36037 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 90.41867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 318 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 GLU A 57 REMARK 465 GLU A 58 REMARK 465 ARG A 59 REMARK 465 MET A 60 REMARK 465 GLU A 61 REMARK 465 THR A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 HIS A 67 REMARK 465 LEU A 68 REMARK 465 ARG A 69 REMARK 465 GLY A 70 REMARK 465 GLN A 71 REMARK 465 HIS A 72 REMARK 465 TYR A 73 REMARK 465 HIS A 74 REMARK 465 GLN A 75 REMARK 465 LYS A 76 REMARK 465 GLY A 77 REMARK 465 GLN A 78 REMARK 465 ASN A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 PHE A 82 REMARK 465 ASP A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 PRO A 130 REMARK 465 ALA A 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 18 CG CD REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 18 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 -4.01 75.78 REMARK 500 THR A 127 -159.07 -132.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MIX RELATED DB: PDB REMARK 900 5MIX IS THE SAME PROTEIN, BUT A DIFFERENT CRYSTAL FORM (SPACE GROUP REMARK 900 P 3 2 1) REMARK 900 RELATED ID: 5MJ0 RELATED DB: PDB REMARK 900 5MJ0 IS THE SAME PROTEIN, BUT A DIFFERENT CRYSTAL FORM (SPACE GROUP REMARK 900 I 4_1 3 2) REMARK 900 RELATED ID: 5MJ1 RELATED DB: PDB REMARK 900 5MJ1 IS THE SAME PROTEIN IN THE SAME SPACE GROUP, BUT BEFORE UV-RIP REMARK 900 EXPERIMENT DBREF 5MJ2 A 17 131 UNP Q01151 CD83_HUMAN 17 131 SEQADV 5MJ2 GLY A 16 UNP Q01151 EXPRESSION TAG SEQADV 5MJ2 SER A 17 UNP Q01151 ALA 17 EXPRESSION TAG SEQADV 5MJ2 GLY A 19 UNP Q01151 ALA 19 EXPRESSION TAG SEQADV 5MJ2 SER A 27 UNP Q01151 CYS 27 CONFLICT SEQADV 5MJ2 SER A 100 UNP Q01151 CYS 100 CONFLICT SEQADV 5MJ2 SER A 129 UNP Q01151 CYS 129 CONFLICT SEQRES 1 A 116 GLY SER PRO GLY THR PRO GLU VAL LYS VAL ALA SER SER SEQRES 2 A 116 GLU ASP VAL ASP LEU PRO CYS THR ALA PRO TRP ASP PRO SEQRES 3 A 116 GLN VAL PRO TYR THR VAL SER TRP VAL LYS LEU LEU GLU SEQRES 4 A 116 GLY GLY GLU GLU ARG MET GLU THR PRO GLN GLU ASP HIS SEQRES 5 A 116 LEU ARG GLY GLN HIS TYR HIS GLN LYS GLY GLN ASN GLY SEQRES 6 A 116 SER PHE ASP ALA PRO ASN GLU ARG PRO TYR SER LEU LYS SEQRES 7 A 116 ILE ARG ASN THR THR SER SER ASN SER GLY THR TYR ARG SEQRES 8 A 116 CYS THR LEU GLN ASP PRO ASP GLY GLN ARG ASN LEU SER SEQRES 9 A 116 GLY LYS VAL ILE LEU ARG VAL THR GLY SER PRO ALA HET PEG A 201 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 PEG C4 H10 O3 FORMUL 3 HOH *42(H2 O) HELIX 1 AA1 THR A 98 SER A 102 5 5 SHEET 1 AA1 4 GLU A 22 ALA A 26 0 SHEET 2 AA1 4 ASN A 117 THR A 127 1 O THR A 127 N VAL A 25 SHEET 3 AA1 4 GLY A 103 GLN A 110 -1 N TYR A 105 O VAL A 122 SHEET 4 AA1 4 THR A 46 LEU A 52 -1 N LEU A 52 O THR A 104 SHEET 1 AA2 2 VAL A 31 LEU A 33 0 SHEET 2 AA2 2 LEU A 92 ILE A 94 -1 O ILE A 94 N VAL A 31 SSBOND 1 CYS A 35 CYS A 107 1555 1555 2.04 SITE 1 AC1 2 TRP A 39 ARG A 88 CRYST1 62.978 62.978 135.628 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015879 0.009167 0.000000 0.00000 SCALE2 0.000000 0.018335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007373 0.00000