PDB Short entry for 5NI0 HEADER HYDROLASE 22-MAR-17 5NI0 TITLE VIM-2_10C. METALLO-BETA-LACTAMASE INHIBITORS BY BIOISOSTERIC TITLE 2 REPLACEMENT: PREPARATION, ACTIVITY AND BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: BLAVIM-2,CLASS B CARBAPENEMASE VIM-2,METALLO BETA-LACTAMASE, COMPND 5 METALLO-BETA LACTAMASE PROTEIN,METALLO-BETA-LACTAMASE VIM-2,VIM-2, COMPND 6 VIM-2 BETA-LACTAMASE,VIM-2 CLASS B METALLO B-LACTAMASE,VIM-2 TYPE COMPND 7 METALLO-BETA-LACTAMASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITION PROPERTIES, BIOISOSTERS, THIOLS, METALLO-BETA-LACTAMASE KEYWDS 2 INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SKAGSETH,S.AKHTER,M.H.PAULSEN,O.SAMUELSEN,Z.MUHAMMAD,H.-K.S.LEIROS, AUTHOR 2 A.BAYER REVDAT 3 16-OCT-19 5NI0 1 REMARK REVDAT 2 10-MAY-17 5NI0 1 JRNL REVDAT 1 26-APR-17 5NI0 0 JRNL AUTH S.SKAGSETH,S.AKHTER,M.H.PAULSEN,Z.MUHAMMAD,S.LAUKSUND, JRNL AUTH 2 H.S.LEIROS,A.BAYER JRNL TITL METALLO-BETA-LACTAMASE INHIBITORS BY BIOISOSTERIC JRNL TITL 2 REPLACEMENT: PREPARATION, ACTIVITY AND BINDING. JRNL REF EUR J MED CHEM V. 135 159 2017 JRNL REFN ISSN 1768-3254 JRNL PMID 28445786 JRNL DOI 10.1016/J.EJMECH.2017.04.035 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 56544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7729 - 4.5330 0.89 2743 131 0.1644 0.1746 REMARK 3 2 4.5330 - 3.6016 0.90 2658 141 0.1324 0.1620 REMARK 3 3 3.6016 - 3.1473 0.93 2680 157 0.1514 0.2242 REMARK 3 4 3.1473 - 2.8600 0.95 2684 161 0.1633 0.1714 REMARK 3 5 2.8600 - 2.6553 0.92 2671 138 0.1671 0.1963 REMARK 3 6 2.6553 - 2.4989 0.94 2707 131 0.1624 0.2087 REMARK 3 7 2.4989 - 2.3738 0.95 2693 142 0.1705 0.2154 REMARK 3 8 2.3738 - 2.2706 0.95 2677 145 0.1746 0.2503 REMARK 3 9 2.2706 - 2.1832 0.95 2694 127 0.1815 0.2357 REMARK 3 10 2.1832 - 2.1079 0.93 2665 150 0.1760 0.2252 REMARK 3 11 2.1079 - 2.0421 0.95 2696 118 0.1903 0.2213 REMARK 3 12 2.0421 - 1.9837 0.96 2676 145 0.1949 0.2249 REMARK 3 13 1.9837 - 1.9315 0.95 2707 146 0.2053 0.2637 REMARK 3 14 1.9315 - 1.8844 0.95 2690 132 0.2375 0.2619 REMARK 3 15 1.8844 - 1.8416 0.97 2731 148 0.2348 0.2667 REMARK 3 16 1.8416 - 1.8024 0.95 2685 135 0.2449 0.2808 REMARK 3 17 1.8024 - 1.7664 0.98 2746 148 0.2775 0.3197 REMARK 3 18 1.7664 - 1.7330 0.97 2762 122 0.2866 0.2867 REMARK 3 19 1.7330 - 1.7021 0.98 2729 157 0.2989 0.3352 REMARK 3 20 1.7021 - 1.6732 0.86 2470 106 0.3185 0.3380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3618 REMARK 3 ANGLE : 1.323 4956 REMARK 3 CHIRALITY : 0.054 567 REMARK 3 PLANARITY : 0.007 651 REMARK 3 DIHEDRAL : 14.951 1293 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-27% PEG 3350, 0.2 M MAGNESIUM REMARK 280 FORMATE, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.85800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.45600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.45600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.85800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 PHE A 0 REMARK 465 LYS A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 TYR A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 MET A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 SER A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 ARG A 296 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 MET E -1 REMARK 465 PHE E 0 REMARK 465 LYS E 1 REMARK 465 LEU E 2 REMARK 465 LEU E 3 REMARK 465 SER E 4 REMARK 465 LYS E 5 REMARK 465 LEU E 6 REMARK 465 LEU E 7 REMARK 465 VAL E 8 REMARK 465 TYR E 9 REMARK 465 LEU E 10 REMARK 465 THR E 11 REMARK 465 ALA E 12 REMARK 465 SER E 13 REMARK 465 ILE E 14 REMARK 465 MET E 15 REMARK 465 ALA E 16 REMARK 465 ILE E 17 REMARK 465 ALA E 18 REMARK 465 SER E 19 REMARK 465 PRO E 20 REMARK 465 LEU E 21 REMARK 465 ALA E 22 REMARK 465 PHE E 23 REMARK 465 SER E 24 REMARK 465 VAL E 25 REMARK 465 ASP E 26 REMARK 465 SER E 27 REMARK 465 SER E 28 REMARK 465 GLY E 29 REMARK 465 ASN E 295 REMARK 465 ARG E 296 REMARK 465 SER E 297 REMARK 465 VAL E 298 REMARK 465 VAL E 299 REMARK 465 GLU E 300 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS E 90 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG E 248 O HOH E 502 1.55 REMARK 500 O HOH E 637 O HOH E 651 1.89 REMARK 500 O HOH E 619 O HOH E 702 2.03 REMARK 500 O HOH A 668 O HOH A 697 2.05 REMARK 500 O HOH E 677 O HOH E 703 2.05 REMARK 500 O HOH A 625 O HOH A 715 2.05 REMARK 500 N GLU E 30 O HOH E 501 2.06 REMARK 500 O HOH A 589 O HOH A 657 2.07 REMARK 500 O HOH A 545 O HOH A 706 2.07 REMARK 500 O HOH E 618 O HOH E 709 2.09 REMARK 500 O HOH A 641 O HOH A 662 2.10 REMARK 500 O HOH A 691 O HOH A 719 2.10 REMARK 500 OD2 ASP A 236 O HOH A 502 2.10 REMARK 500 O HOH E 684 O HOH E 714 2.11 REMARK 500 O HOH A 715 O HOH A 729 2.12 REMARK 500 O HOH E 612 O HOH E 709 2.12 REMARK 500 O HOH E 629 O HOH E 688 2.12 REMARK 500 O HOH E 623 O HOH E 685 2.13 REMARK 500 O HOH A 669 O HOH A 693 2.13 REMARK 500 O HOH A 531 O HOH A 715 2.15 REMARK 500 O HOH A 709 O HOH E 709 2.15 REMARK 500 O HOH A 684 O HOH A 702 2.15 REMARK 500 O HOH A 518 O HOH A 706 2.15 REMARK 500 O HOH A 712 O HOH E 709 2.16 REMARK 500 O HOH A 536 O HOH A 706 2.16 REMARK 500 OG SER A 176 O HOH A 503 2.16 REMARK 500 NH1 ARG E 248 O HOH E 502 2.16 REMARK 500 O HOH E 510 O HOH E 668 2.17 REMARK 500 O HOH A 675 O HOH A 679 2.17 REMARK 500 O HOH E 668 O HOH E 679 2.17 REMARK 500 O HOH E 569 O HOH E 702 2.18 REMARK 500 O HOH A 714 O HOH A 721 2.19 REMARK 500 OE2 GLU A 30 O HOH A 504 2.19 REMARK 500 O HOH E 558 O HOH E 621 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 706 O HOH E 682 3454 2.07 REMARK 500 O HOH A 706 O HOH E 548 3454 2.11 REMARK 500 O HOH A 575 O HOH A 609 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 147.61 72.08 REMARK 500 ALA A 86 30.13 -98.54 REMARK 500 TRP A 87 75.55 63.94 REMARK 500 ALA A 195 -104.25 -154.86 REMARK 500 ASP E 84 144.10 74.00 REMARK 500 TRP E 87 69.89 65.82 REMARK 500 ALA E 195 -101.55 -155.26 REMARK 500 ASN E 233 63.26 -59.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 730 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH E 728 DISTANCE = 6.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 97.9 REMARK 620 3 HIS A 196 NE2 102.0 118.0 REMARK 620 4 HOH A 527 O 84.1 126.9 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 115.7 REMARK 620 3 HIS A 263 NE2 105.1 115.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 116 NE2 REMARK 620 2 HIS E 118 ND1 98.2 REMARK 620 3 HIS E 196 NE2 104.4 112.9 REMARK 620 4 HOH E 507 O 78.7 144.3 102.2 REMARK 620 5 8XW E 403 SAD 125.7 121.2 93.5 47.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 120 OD2 REMARK 620 2 CYS E 221 SG 116.1 REMARK 620 3 HIS E 263 NE2 108.5 106.9 REMARK 620 4 HOH E 507 O 77.5 77.3 169.3 REMARK 620 5 8XW E 403 OAC 149.6 92.6 69.6 100.7 REMARK 620 6 8XW E 403 SAD 92.6 116.2 116.1 53.9 63.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8XW A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8XW E 403 DBREF 5NI0 A -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 DBREF 5NI0 E -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU SEQRES 1 E 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 E 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 E 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 E 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 E 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 E 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 E 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 E 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 E 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 E 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 E 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 E 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 E 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 E 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 E 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 E 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 E 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 E 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 E 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 E 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 E 266 ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET 8XW A 403 39 HET ZN E 401 1 HET ZN E 402 1 HET 8XW E 403 39 HETNAM ZN ZINC ION HETNAM 8XW [(2~{R})-1-ETHANOYLSULFANYL-6-PHENYL-HEXAN-2- HETNAM 2 8XW YL]PHOSPHONIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 8XW 2(C14 H21 O4 P S) FORMUL 9 HOH *458(H2 O) HELIX 1 AA1 THR A 33 ILE A 37 5 5 HELIX 2 AA2 GLY A 88 ILE A 104 1 16 HELIX 3 AA3 HIS A 118 GLY A 123 1 6 HELIX 4 AA4 GLY A 124 ALA A 131 1 8 HELIX 5 AA5 SER A 139 GLY A 150 1 12 HELIX 6 AA6 CYS A 221 ILE A 223 5 3 HELIX 7 AA7 GLU A 241 TYR A 253 1 13 HELIX 8 AA8 LEU A 280 ASN A 295 1 16 HELIX 9 AA9 THR E 33 ILE E 37 5 5 HELIX 10 AB1 GLY E 88 ILE E 104 1 16 HELIX 11 AB2 HIS E 118 GLY E 123 1 6 HELIX 12 AB3 GLY E 124 ALA E 131 1 8 HELIX 13 AB4 SER E 139 GLY E 150 1 12 HELIX 14 AB5 CYS E 221 ILE E 223 5 3 HELIX 15 AB6 ASN E 233 ALA E 237 5 5 HELIX 16 AB7 GLU E 241 TYR E 253 1 13 HELIX 17 AB8 LEU E 280 ALA E 292 1 13 SHEET 1 AA1 7 ARG A 43 ALA A 49 0 SHEET 2 AA1 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 AA1 7 ALA A 64 ASP A 76 -1 O ALA A 64 N PHE A 61 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 AA1 7 ALA A 135 ALA A 138 1 O TYR A 137 N ALA A 112 SHEET 7 AA1 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 AA2 5 ALA A 181 PHE A 184 0 SHEET 2 AA2 5 VAL A 187 PHE A 190 -1 O LEU A 189 N VAL A 182 SHEET 3 AA2 5 VAL A 202 VAL A 205 -1 O TYR A 204 N GLU A 188 SHEET 4 AA2 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 AA2 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 AA3 7 ARG E 43 ALA E 49 0 SHEET 2 AA3 7 VAL E 52 PHE E 61 -1 O ILE E 56 N ARG E 43 SHEET 3 AA3 7 ALA E 64 ASP E 76 -1 O ALA E 64 N PHE E 61 SHEET 4 AA3 7 GLU E 79 ILE E 83 -1 O GLU E 79 N ASP E 76 SHEET 5 AA3 7 VAL E 109 VAL E 113 1 O ARG E 111 N LEU E 82 SHEET 6 AA3 7 ALA E 135 ALA E 138 1 O TYR E 137 N ALA E 112 SHEET 7 AA3 7 HIS E 170 SER E 171 1 O HIS E 170 N THR E 136 SHEET 1 AA4 5 ALA E 181 PHE E 184 0 SHEET 2 AA4 5 VAL E 187 PHE E 190 -1 O VAL E 187 N PHE E 184 SHEET 3 AA4 5 VAL E 202 VAL E 205 -1 O TYR E 204 N GLU E 188 SHEET 4 AA4 5 VAL E 216 GLY E 220 -1 O TYR E 218 N VAL E 203 SHEET 5 AA4 5 PHE E 258 PRO E 261 1 O ILE E 260 N LEU E 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.09 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 1.98 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 2.07 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.07 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.15 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.18 LINK NE2 HIS E 116 ZN ZN E 401 1555 1555 2.08 LINK ND1 HIS E 118 ZN ZN E 401 1555 1555 2.03 LINK OD2 ASP E 120 ZN ZN E 402 1555 1555 2.08 LINK NE2 HIS E 196 ZN ZN E 401 1555 1555 2.03 LINK SG CYS E 221 ZN ZN E 402 1555 1555 2.11 LINK NE2 HIS E 263 ZN ZN E 402 1555 1555 2.21 LINK ZN ZN A 401 O HOH A 527 1555 1555 1.82 LINK ZN ZN E 401 O HOH E 507 1555 1555 2.68 LINK ZN ZN E 401 SAD 8XW E 403 1555 1555 2.88 LINK ZN ZN E 402 O HOH E 507 1555 1555 1.82 LINK ZN ZN E 402 OAC 8XW E 403 1555 1555 2.25 LINK ZN ZN E 402 SAD 8XW E 403 1555 1555 2.75 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 196 8XW A 403 SITE 2 AC1 5 HOH A 527 SITE 1 AC2 6 ASP A 120 ARG A 121 CYS A 221 HIS A 263 SITE 2 AC2 6 8XW A 403 HOH A 527 SITE 1 AC3 13 PHE A 61 TYR A 67 TRP A 87 ASP A 120 SITE 2 AC3 13 HIS A 196 CYS A 221 ARG A 228 HIS A 263 SITE 3 AC3 13 ZN A 401 ZN A 402 HOH A 527 HOH A 644 SITE 4 AC3 13 HOH E 651 SITE 1 AC4 5 HIS E 116 HIS E 118 HIS E 196 8XW E 403 SITE 2 AC4 5 HOH E 507 SITE 1 AC5 6 ASP E 120 ARG E 121 CYS E 221 HIS E 263 SITE 2 AC5 6 8XW E 403 HOH E 507 SITE 1 AC6 15 PHE E 61 TYR E 67 TRP E 87 HIS E 118 SITE 2 AC6 15 ASP E 119 ASP E 120 HIS E 196 CYS E 221 SITE 3 AC6 15 ARG E 228 ASN E 233 HIS E 263 ZN E 401 SITE 4 AC6 15 ZN E 402 HOH E 507 HOH E 527 CRYST1 45.716 91.070 122.912 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021874 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008136 0.00000