PDB Short entry for 5NM2 HEADER SIGNALING PROTEIN 05-APR-17 5NM2 TITLE A2A ADENOSINE RECEPTOR CRYO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE COMPND 3 RECEPTOR A2A; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CYTOCHROME B-562; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: ADORA2A, ADORA2, CYBC; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ROOM-TEMPERATURE, SERIAL CRYSTALLOGRAPHY, HYDROLASE, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.WEINERT,R.CHENG,D.JAMES,D.GASHI,P.NOGLY,K.JAEGER,A.S.DORE,T.GENG, AUTHOR 2 R.COOKE,M.HENNIG,J.STANDFUSS REVDAT 3 17-JAN-24 5NM2 1 REMARK REVDAT 2 14-AUG-19 5NM2 1 REMARK REVDAT 1 27-SEP-17 5NM2 0 JRNL AUTH T.WEINERT,N.OLIERIC,R.CHENG,S.BRUNLE,D.JAMES,D.OZEROV, JRNL AUTH 2 D.GASHI,L.VERA,M.MARSH,K.JAEGER,F.DWORKOWSKI,E.PANEPUCCI, JRNL AUTH 3 S.BASU,P.SKOPINTSEV,A.S.DORE,T.GENG,R.M.COOKE,M.LIANG, JRNL AUTH 4 A.E.PROTA,V.PANNEELS,P.NOGLY,U.ERMLER,G.SCHERTLER,M.HENNIG, JRNL AUTH 5 M.O.STEINMETZ,M.WANG,J.STANDFUSS JRNL TITL SERIAL MILLISECOND CRYSTALLOGRAPHY FOR ROUTINE JRNL TITL 2 ROOM-TEMPERATURE STRUCTURE DETERMINATION AT SYNCHROTRONS. JRNL REF NAT COMMUN V. 8 542 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28912485 JRNL DOI 10.1038/S41467-017-00630-4 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 32381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3826 - 4.3317 0.99 3383 148 0.1897 0.2210 REMARK 3 2 4.3317 - 3.4387 1.00 3253 166 0.1536 0.2009 REMARK 3 3 3.4387 - 3.0042 1.00 3216 137 0.1576 0.1988 REMARK 3 4 3.0042 - 2.7296 1.00 3162 205 0.1489 0.1836 REMARK 3 5 2.7296 - 2.5340 1.00 3179 159 0.1600 0.1979 REMARK 3 6 2.5340 - 2.3846 0.98 3093 161 0.1744 0.2279 REMARK 3 7 2.3846 - 2.2652 0.97 3093 150 0.1962 0.2412 REMARK 3 8 2.2652 - 2.1666 0.76 2391 134 0.2079 0.2230 REMARK 3 9 2.1666 - 2.0832 0.70 2191 114 0.2185 0.2439 REMARK 3 10 2.0832 - 2.0113 0.61 1927 105 0.2273 0.2675 REMARK 3 11 2.0113 - 1.9484 0.61 1905 109 0.2914 0.3235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3649 REMARK 3 ANGLE : 1.155 4924 REMARK 3 CHIRALITY : 0.060 561 REMARK 3 PLANARITY : 0.007 622 REMARK 3 DIHEDRAL : 15.002 2296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3430 -3.3063 20.9057 REMARK 3 T TENSOR REMARK 3 T11: 0.2984 T22: 0.3350 REMARK 3 T33: 0.2654 T12: -0.0150 REMARK 3 T13: 0.0131 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.1578 L22: 1.2672 REMARK 3 L33: 1.4251 L12: -0.0617 REMARK 3 L13: 0.2991 L23: 0.2793 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0329 S13: -0.0120 REMARK 3 S21: -0.0430 S22: -0.0217 S23: 0.0810 REMARK 3 S31: 0.0365 S32: -0.1443 S33: 0.0215 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 1080 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6728 -44.7793 21.9325 REMARK 3 T TENSOR REMARK 3 T11: 0.4507 T22: 0.4048 REMARK 3 T33: 0.8089 T12: 0.0669 REMARK 3 T13: -0.0358 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: -0.4588 L22: 3.3632 REMARK 3 L33: -0.3722 L12: -1.4537 REMARK 3 L13: -0.2094 L23: -0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0866 S13: -0.0994 REMARK 3 S21: -0.3002 S22: 0.0803 S23: -0.2868 REMARK 3 S31: 0.1155 S32: 0.0693 S33: -0.0279 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1081 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7123 -20.7115 12.0624 REMARK 3 T TENSOR REMARK 3 T11: 0.4229 T22: 0.2846 REMARK 3 T33: 0.3439 T12: 0.0431 REMARK 3 T13: -0.0008 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.4825 L22: 0.7951 REMARK 3 L33: 0.2447 L12: -0.2103 REMARK 3 L13: 0.0985 L23: -0.7863 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: 0.0853 S13: -0.2370 REMARK 3 S21: -0.2905 S22: -0.0471 S23: -0.0347 REMARK 3 S31: 0.2543 S32: 0.0750 S33: -0.0496 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32392 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.948 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5IU4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.0, 0.05M REMARK 280 SODIUM THIOCYANATE, 28-34% PEG400, 5 MM ZM241385, 2% (V/V) 1,6- REMARK 280 HEXANEDIO, LIPIDIC CUBIC PHASE, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.92350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.92350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.71400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.79950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.71400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.79950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.92350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.71400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.79950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.92350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.71400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.79950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -8 REMARK 465 TYR A -7 REMARK 465 LYS A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ALA A 1043 REMARK 465 THR A 1044 REMARK 465 PRO A 1045 REMARK 465 PRO A 1046 REMARK 465 LYS A 1047 REMARK 465 LEU A 1048 REMARK 465 GLU A 1049 REMARK 465 ASP A 1050 REMARK 465 LYS A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 SER A 1055 REMARK 465 PRO A 1056 REMARK 465 GLU A 1057 REMARK 465 HIS A 306 REMARK 465 VAL A 307 REMARK 465 LEU A 308 REMARK 465 ARG A 309 REMARK 465 GLN A 310 REMARK 465 GLN A 311 REMARK 465 GLU A 312 REMARK 465 PRO A 313 REMARK 465 PHE A 314 REMARK 465 LYS A 315 REMARK 465 ALA A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1431 O HOH A 1432 1.92 REMARK 500 O HOH A 1417 O HOH A 1427 2.03 REMARK 500 O1 OLA A 1203 O HOH A 1301 2.04 REMARK 500 O HOH A 1411 O HOH A 1423 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A1083 78.26 -114.42 REMARK 500 TYR A1101 -56.67 -137.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1426 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1427 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1428 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A1429 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH A1430 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A1431 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH A1432 DISTANCE = 8.54 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 1204 REMARK 610 OLA A 1205 REMARK 610 OLA A 1206 REMARK 610 OLA A 1207 REMARK 610 OLA A 1208 REMARK 610 OLA A 1209 REMARK 610 OLA A 1210 REMARK 610 OLA A 1211 REMARK 610 OLA A 1212 REMARK 610 OLA A 1213 REMARK 610 OLA A 1214 REMARK 610 OLA A 1215 REMARK 610 OLA A 1216 REMARK 610 OLA A 1217 REMARK 610 OLB A 1218 REMARK 610 OLB A 1219 REMARK 610 OLC A 1221 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD1 REMARK 620 2 SER A 91 OG 129.3 REMARK 620 3 HOH A1320 O 96.2 116.5 REMARK 620 4 HOH A1337 O 92.3 125.1 86.9 REMARK 620 5 HOH A1383 O 80.8 69.7 79.1 163.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZMA A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1224 DBREF 5NM2 A 2 208 UNP P29274 AA2AR_HUMAN 2 208 DBREF 5NM2 A 1001 1105 UNP P0ABE7 C562_ECOLX 23 127 DBREF 5NM2 A 219 317 UNP P29274 AA2AR_HUMAN 219 317 SEQADV 5NM2 ASP A -8 UNP P29274 EXPRESSION TAG SEQADV 5NM2 TYR A -7 UNP P29274 EXPRESSION TAG SEQADV 5NM2 LYS A -6 UNP P29274 EXPRESSION TAG SEQADV 5NM2 ASP A -5 UNP P29274 EXPRESSION TAG SEQADV 5NM2 ASP A -4 UNP P29274 EXPRESSION TAG SEQADV 5NM2 ASP A -3 UNP P29274 EXPRESSION TAG SEQADV 5NM2 ASP A -2 UNP P29274 EXPRESSION TAG SEQADV 5NM2 GLY A -1 UNP P29274 EXPRESSION TAG SEQADV 5NM2 ALA A 0 UNP P29274 EXPRESSION TAG SEQADV 5NM2 PRO A 1 UNP P29274 EXPRESSION TAG SEQADV 5NM2 LEU A 54 UNP P29274 ALA 54 ENGINEERED MUTATION SEQADV 5NM2 ALA A 88 UNP P29274 THR 88 ENGINEERED MUTATION SEQADV 5NM2 ALA A 107 UNP P29274 ARG 107 ENGINEERED MUTATION SEQADV 5NM2 ALA A 122 UNP P29274 LYS 122 ENGINEERED MUTATION SEQADV 5NM2 ALA A 154 UNP P29274 ASN 154 ENGINEERED MUTATION SEQADV 5NM2 ALA A 202 UNP P29274 LEU 202 ENGINEERED MUTATION SEQADV 5NM2 TRP A 1007 UNP P0ABE7 MET 29 CONFLICT SEQADV 5NM2 ILE A 1102 UNP P0ABE7 HIS 124 CONFLICT SEQADV 5NM2 LEU A 1106 UNP P0ABE7 LINKER SEQADV 5NM2 ALA A 235 UNP P29274 LEU 235 ENGINEERED MUTATION SEQADV 5NM2 ALA A 239 UNP P29274 VAL 239 ENGINEERED MUTATION SEQADV 5NM2 ALA A 277 UNP P29274 SER 277 ENGINEERED MUTATION SEQADV 5NM2 ALA A 318 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 319 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 320 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 321 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 322 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 323 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 324 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 325 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 326 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 327 UNP P29274 EXPRESSION TAG SEQADV 5NM2 HIS A 328 UNP P29274 EXPRESSION TAG SEQRES 1 A 433 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO PRO ILE MET SEQRES 2 A 433 GLY SER SER VAL TYR ILE THR VAL GLU LEU ALA ILE ALA SEQRES 3 A 433 VAL LEU ALA ILE LEU GLY ASN VAL LEU VAL CYS TRP ALA SEQRES 4 A 433 VAL TRP LEU ASN SER ASN LEU GLN ASN VAL THR ASN TYR SEQRES 5 A 433 PHE VAL VAL SER LEU ALA ALA ALA ASP ILE LEU VAL GLY SEQRES 6 A 433 VAL LEU ALA ILE PRO PHE ALA ILE THR ILE SER THR GLY SEQRES 7 A 433 PHE CYS ALA ALA CYS HIS GLY CYS LEU PHE ILE ALA CYS SEQRES 8 A 433 PHE VAL LEU VAL LEU ALA GLN SER SER ILE PHE SER LEU SEQRES 9 A 433 LEU ALA ILE ALA ILE ASP ARG TYR ILE ALA ILE ALA ILE SEQRES 10 A 433 PRO LEU ARG TYR ASN GLY LEU VAL THR GLY THR ARG ALA SEQRES 11 A 433 ALA GLY ILE ILE ALA ILE CYS TRP VAL LEU SER PHE ALA SEQRES 12 A 433 ILE GLY LEU THR PRO MET LEU GLY TRP ASN ASN CYS GLY SEQRES 13 A 433 GLN PRO LYS GLU GLY LYS ALA HIS SER GLN GLY CYS GLY SEQRES 14 A 433 GLU GLY GLN VAL ALA CYS LEU PHE GLU ASP VAL VAL PRO SEQRES 15 A 433 MET ASN TYR MET VAL TYR PHE ASN PHE PHE ALA CYS VAL SEQRES 16 A 433 LEU VAL PRO LEU LEU LEU MET LEU GLY VAL TYR LEU ARG SEQRES 17 A 433 ILE PHE ALA ALA ALA ARG ARG GLN LEU ALA ASP LEU GLU SEQRES 18 A 433 ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL ILE SEQRES 19 A 433 GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA LEU SEQRES 20 A 433 THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS ALA SEQRES 21 A 433 THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER PRO SEQRES 22 A 433 GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU VAL SEQRES 23 A 433 GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU GLY SEQRES 24 A 433 LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU LYS SEQRES 25 A 433 THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU GLU ARG SEQRES 26 A 433 ALA ARG SER THR LEU GLN LYS GLU VAL HIS ALA ALA LYS SEQRES 27 A 433 SER ALA ALA ILE ILE ALA GLY LEU PHE ALA LEU CYS TRP SEQRES 28 A 433 LEU PRO LEU HIS ILE ILE ASN CYS PHE THR PHE PHE CYS SEQRES 29 A 433 PRO ASP CYS SER HIS ALA PRO LEU TRP LEU MET TYR LEU SEQRES 30 A 433 ALA ILE VAL LEU ALA HIS THR ASN SER VAL VAL ASN PRO SEQRES 31 A 433 PHE ILE TYR ALA TYR ARG ILE ARG GLU PHE ARG GLN THR SEQRES 32 A 433 PHE ARG LYS ILE ILE ARG SER HIS VAL LEU ARG GLN GLN SEQRES 33 A 433 GLU PRO PHE LYS ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 34 A 433 HIS HIS HIS HIS HET NA A1201 1 HET ZMA A1202 40 HET OLA A1203 53 HET OLA A1204 37 HET OLA A1205 21 HET OLA A1206 46 HET OLA A1207 37 HET OLA A1208 28 HET OLA A1209 19 HET OLA A1210 49 HET OLA A1211 10 HET OLA A1212 20 HET OLA A1213 43 HET OLA A1214 26 HET OLA A1215 37 HET OLA A1216 43 HET OLA A1217 28 HET OLB A1218 46 HET OLB A1219 49 HET OLC A1220 65 HET OLC A1221 46 HET CLR A1222 74 HET CLR A1223 74 HET CLR A1224 74 HETNAM NA SODIUM ION HETNAM ZMA 4-{2-[(7-AMINO-2-FURAN-2-YL[1,2,4]TRIAZOLO[1,5-A][1,3, HETNAM 2 ZMA 5]TRIAZIN-5-YL)AMINO]ETHYL}PHENOL HETNAM OLA OLEIC ACID HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM CLR CHOLESTEROL HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 NA NA 1+ FORMUL 3 ZMA C16 H15 N7 O2 FORMUL 4 OLA 15(C18 H34 O2) FORMUL 19 OLB 2(C21 H40 O4) FORMUL 21 OLC 2(C21 H40 O4) FORMUL 23 CLR 3(C27 H46 O) FORMUL 26 HOH *132(H2 O) HELIX 1 AA1 PRO A 1 ASN A 34 1 34 HELIX 2 AA2 SER A 35 GLN A 38 5 4 HELIX 3 AA3 ASN A 39 LEU A 58 1 20 HELIX 4 AA4 LEU A 58 THR A 68 1 11 HELIX 5 AA5 CYS A 74 ILE A 108 1 35 HELIX 6 AA6 ILE A 108 VAL A 116 1 9 HELIX 7 AA7 THR A 117 LEU A 137 1 21 HELIX 8 AA8 THR A 138 GLY A 142 5 5 HELIX 9 AA9 LYS A 150 GLN A 157 1 8 HELIX 10 AB1 LEU A 167 VAL A 172 1 6 HELIX 11 AB2 PRO A 173 PHE A 180 1 8 HELIX 12 AB3 VAL A 186 LYS A 1019 1 42 HELIX 13 AB4 ASN A 1022 LYS A 1042 1 21 HELIX 14 AB5 LYS A 1059 GLU A 1081 1 23 HELIX 15 AB6 LYS A 1083 GLN A 1093 1 11 HELIX 16 AB7 GLN A 1093 TYR A 1101 1 9 HELIX 17 AB8 TYR A 1101 CYS A 259 1 47 HELIX 18 AB9 PRO A 266 ILE A 292 1 27 HELIX 19 AC1 ILE A 292 SER A 305 1 14 SHEET 1 AA1 2 CYS A 71 ALA A 73 0 SHEET 2 AA1 2 GLN A 163 ALA A 165 -1 O VAL A 164 N ALA A 72 SSBOND 1 CYS A 71 CYS A 159 1555 1555 2.07 SSBOND 2 CYS A 74 CYS A 146 1555 1555 2.05 SSBOND 3 CYS A 77 CYS A 166 1555 1555 2.05 SSBOND 4 CYS A 259 CYS A 262 1555 1555 2.06 LINK OD1 ASP A 52 NA NA A1201 1555 1555 2.47 LINK OG SER A 91 NA NA A1201 1555 1555 2.54 LINK NA NA A1201 O HOH A1320 1555 1555 2.77 LINK NA NA A1201 O HOH A1337 1555 1555 2.28 LINK NA NA A1201 O HOH A1383 1555 1555 2.53 SITE 1 AC1 5 ASP A 52 SER A 91 HOH A1320 HOH A1337 SITE 2 AC1 5 HOH A1383 SITE 1 AC2 13 LEU A 85 PHE A 168 GLU A 169 MET A 177 SITE 2 AC2 13 TRP A 246 LEU A 249 HIS A 250 ASN A 253 SITE 3 AC2 13 HIS A 264 MET A 270 HOH A1347 HOH A1353 SITE 4 AC2 13 HOH A1392 SITE 1 AC3 3 THR A 65 PHE A 70 HOH A1301 SITE 1 AC4 2 PRO A 266 HOH A1396 SITE 1 AC5 5 PHE A 44 PHE A 93 ALA A 97 ASP A 101 SITE 2 AC5 5 VAL A 116 SITE 1 AC6 6 GLY A 5 SER A 6 LEU A 267 TYR A 271 SITE 2 AC6 6 HOH A1306 HOH A1316 SITE 1 AC7 1 OLA A1217 SITE 1 AC8 4 LEU A 19 LEU A 22 PHE A 286 HOH A1384 SITE 1 AC9 3 TRP A 32 VAL A 229 LYS A 233 SITE 1 AD1 1 LEU A 187 SITE 1 AD2 2 SER A 7 THR A 11 SITE 1 AD3 7 MET A 140 LEU A 141 TYR A 179 ALA A 184 SITE 2 AD3 7 OLA A1214 HOH A1309 HOH A1313 SITE 1 AD4 3 MET A 140 OLA A1213 OLA A1215 SITE 1 AD5 2 OLA A1214 OLC A1221 SITE 1 AD6 4 PHE A 255 CYS A 262 OLC A1220 CLR A1224 SITE 1 AD7 7 PRO A 2 ILE A 3 SER A 6 ILE A 10 SITE 2 AD7 7 THR A 68 OLA A1207 HOH A1428 SITE 1 AD8 6 PHE A 183 PHE A 258 CLR A1222 CLR A1224 SITE 2 AD8 6 HOH A1311 HOH A1379 SITE 1 AD9 5 CYS A 28 TRP A 32 VAL A 46 ALA A 50 SITE 2 AD9 5 ARG A 205 SITE 1 AE1 9 VAL A 57 THR A 65 PHE A 70 CYS A 71 SITE 2 AE1 9 GLN A 163 ASP A 261 OLA A1216 CLR A1222 SITE 3 AE1 9 CLR A1224 SITE 1 AE2 7 TYR A 43 LEU A 54 GLY A 118 ILE A 125 SITE 2 AE2 7 TRP A 129 PHE A 133 OLA A1215 SITE 1 AE3 8 ALA A 72 ALA A 73 GLY A 76 ILE A 80 SITE 2 AE3 8 OLB A1218 OLC A1220 CLR A1224 HOH A1311 SITE 1 AE4 2 CYS A 262 SER A 263 SITE 1 AE5 8 CYS A 254 PHE A 255 PHE A 258 OLA A1216 SITE 2 AE5 8 OLB A1218 OLC A1220 CLR A1222 HOH A1388 CRYST1 39.428 179.599 139.847 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007151 0.00000