PDB Short entry for 5NOI HEADER SIGNALING PROTEIN 12-APR-17 5NOI TITLE HUMAN ROBO2 EXTRACELLULAR DOMAINS 4-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROBO2, KIAA1568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SLIT-ROBO, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.OPATOWSKY,R.BARAK REVDAT 4 17-JAN-24 5NOI 1 REMARK REVDAT 3 16-OCT-19 5NOI 1 REMARK REVDAT 2 29-NOV-17 5NOI 1 JRNL REVDAT 1 25-OCT-17 5NOI 0 JRNL AUTH G.YOM-TOV,R.BARAK,O.MATALON,M.BARDA-SAAD,J.GUEZ-HADDAD, JRNL AUTH 2 Y.OPATOWSKY JRNL TITL ROBO IG4 IS A DIMERIZATION DOMAIN. JRNL REF J. MOL. BIOL. V. 429 3606 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 29017837 JRNL DOI 10.1016/J.JMB.2017.10.002 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4619 - 6.1628 0.99 1245 133 0.1993 0.2068 REMARK 3 2 6.1628 - 4.8933 1.00 1234 139 0.1820 0.1984 REMARK 3 3 4.8933 - 4.2753 1.00 1233 134 0.1693 0.1880 REMARK 3 4 4.2753 - 3.8846 1.00 1241 140 0.1872 0.2048 REMARK 3 5 3.8846 - 3.6063 1.00 1221 139 0.2357 0.2595 REMARK 3 6 3.6063 - 3.3937 1.00 1238 139 0.2595 0.3516 REMARK 3 7 3.3937 - 3.2238 1.00 1243 133 0.2733 0.3591 REMARK 3 8 3.2238 - 3.0835 1.00 1243 136 0.2623 0.3275 REMARK 3 9 3.0835 - 2.9648 1.00 1224 135 0.3241 0.3361 REMARK 3 10 2.9648 - 2.8625 1.00 1234 136 0.3394 0.3346 REMARK 3 11 2.8625 - 2.7730 1.00 1238 137 0.3615 0.4328 REMARK 3 12 2.7730 - 2.6938 1.00 1226 136 0.3541 0.4355 REMARK 3 13 2.6938 - 2.6229 1.00 1250 137 0.3730 0.3892 REMARK 3 14 2.6229 - 2.5589 1.00 1224 140 0.3400 0.3896 REMARK 3 15 2.5589 - 2.5007 1.00 1239 140 0.3579 0.4303 REMARK 3 16 2.5007 - 2.4475 1.00 1223 138 0.3761 0.3530 REMARK 3 17 2.4475 - 2.3985 1.00 1224 136 0.3866 0.4025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 1520 REMARK 3 ANGLE : 1.915 2081 REMARK 3 CHIRALITY : 0.120 246 REMARK 3 PLANARITY : 0.017 273 REMARK 3 DIHEDRAL : 16.664 933 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 99.9705 102.0444 131.1448 REMARK 3 T TENSOR REMARK 3 T11: 0.5030 T22: 0.3618 REMARK 3 T33: 0.2885 T12: -0.0420 REMARK 3 T13: -0.0129 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.2169 L22: 1.3024 REMARK 3 L33: 0.3624 L12: 0.1463 REMARK 3 L13: 0.2748 L23: -0.0730 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.0980 S13: 0.2026 REMARK 3 S21: 0.4393 S22: -0.0121 S23: 0.0338 REMARK 3 S31: -0.1565 S32: -0.1576 S33: 0.0192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008818 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12530 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4C4K, 2EDJ REMARK 200 REMARK 200 REMARK: PYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M NACL, 11-13% PEG 6000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 49.87450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.73250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.86625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.87450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.59875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.59875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.87450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.86625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 49.87450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.73250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 49.87450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.73250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 49.87450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 92.59875 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 30.86625 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.87450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 30.86625 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 92.59875 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 49.87450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 49.87450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 61.73250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 149.62350 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 216.06375 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 460 REMARK 465 ARG A 461 REMARK 465 LEU A 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 362 CG CD OE1 NE2 REMARK 470 GLN A 363 CG CD OE1 NE2 REMARK 470 GLN A 470 CG CD OE1 NE2 REMARK 470 LYS A 476 CG CD CE NZ REMARK 470 ASN A 477 CG OD1 ND2 REMARK 470 LYS A 510 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 365 O HOH A 601 1.97 REMARK 500 O PRO A 341 O HOH A 602 2.01 REMARK 500 O ASN A 354 O HOH A 603 2.02 REMARK 500 OG SER A 369 O HOH A 604 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 383 NH1 ARG A 383 15557 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 415 NE ARG A 415 CZ -0.087 REMARK 500 ARG A 415 CZ ARG A 415 NH1 -0.089 REMARK 500 PRO A 417 CD PRO A 417 N -0.179 REMARK 500 GLU A 454 CD GLU A 454 OE1 -0.076 REMARK 500 PRO A 463 CD PRO A 463 N -0.242 REMARK 500 GLU A 469 CD GLU A 469 OE1 -0.083 REMARK 500 GLU A 469 CD GLU A 469 OE2 -0.076 REMARK 500 GLU A 496 CD GLU A 496 OE1 -0.113 REMARK 500 GLU A 496 CD GLU A 496 OE2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 361 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 THR A 413 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP A 432 C - N - CA ANGL. DEV. = 18.3 DEGREES REMARK 500 PRO A 463 C - N - CA ANGL. DEV. = 20.0 DEGREES REMARK 500 PRO A 463 C - N - CD ANGL. DEV. = -24.2 DEGREES REMARK 500 PRO A 463 CA - C - N ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 335 85.12 -154.19 REMARK 500 GLN A 362 -70.67 -101.24 REMARK 500 CYS A 439 107.00 -160.55 REMARK 500 ARG A 464 2.97 -64.39 REMARK 500 ASN A 477 77.51 40.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 413 12.53 REMARK 500 ASP A 432 -15.45 REMARK 500 PRO A 463 17.96 REMARK 500 GLU A 469 -11.56 REMARK 500 GLN A 470 12.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 5NOI A 311 509 UNP Q9HCK4 ROBO2_HUMAN 311 509 SEQADV 5NOI MET A 426 UNP Q9HCK4 ASN 426 CONFLICT SEQADV 5NOI LYS A 510 UNP Q9HCK4 EXPRESSION TAG SEQADV 5NOI LEU A 511 UNP Q9HCK4 EXPRESSION TAG SEQRES 1 A 201 ARG ALA PRO PRO GLN PHE VAL VAL ARG PRO ARG ASP GLN SEQRES 2 A 201 ILE VAL ALA GLN GLY ARG THR VAL THR PHE PRO CYS GLU SEQRES 3 A 201 THR LYS GLY ASN PRO GLN PRO ALA VAL PHE TRP GLN LYS SEQRES 4 A 201 GLU GLY SER GLN ASN LEU LEU PHE PRO ASN GLN PRO GLN SEQRES 5 A 201 GLN PRO ASN SER ARG CYS SER VAL SER PRO THR GLY ASP SEQRES 6 A 201 LEU THR ILE THR ASN ILE GLN ARG SER ASP ALA GLY TYR SEQRES 7 A 201 TYR ILE CYS GLN ALA LEU THR VAL ALA GLY SER ILE LEU SEQRES 8 A 201 ALA LYS ALA GLN LEU GLU VAL THR ASP VAL LEU THR ASP SEQRES 9 A 201 ARG PRO PRO PRO ILE ILE LEU GLN GLY PRO ALA MET GLN SEQRES 10 A 201 THR LEU ALA VAL ASP GLY THR ALA LEU LEU LYS CYS LYS SEQRES 11 A 201 ALA THR GLY ASP PRO LEU PRO VAL ILE SER TRP LEU LYS SEQRES 12 A 201 GLU GLY PHE THR PHE PRO GLY ARG ASP PRO ARG ALA THR SEQRES 13 A 201 ILE GLN GLU GLN GLY THR LEU GLN ILE LYS ASN LEU ARG SEQRES 14 A 201 ILE SER ASP THR GLY THR TYR THR CYS VAL ALA THR SER SEQRES 15 A 201 SER SER GLY GLU THR SER TRP SER ALA VAL LEU ASP VAL SEQRES 16 A 201 THR GLU SER GLY LYS LEU FORMUL 2 HOH *14(H2 O) HELIX 1 AA1 GLN A 382 ALA A 386 5 5 HELIX 2 AA2 ARG A 479 THR A 483 5 5 SHEET 1 AA1 2 ALA A 312 VAL A 318 0 SHEET 2 AA1 2 GLU A 336 ASN A 340 -1 O ASN A 340 N ALA A 312 SHEET 1 AA2 5 GLN A 323 ALA A 326 0 SHEET 2 AA2 5 SER A 399 THR A 409 1 O GLN A 405 N GLN A 323 SHEET 3 AA2 5 GLY A 387 LEU A 394 -1 N GLY A 387 O LEU A 406 SHEET 4 AA2 5 VAL A 345 LYS A 349 -1 N GLN A 348 O ILE A 390 SHEET 5 AA2 5 LEU A 355 LEU A 356 -1 O LEU A 356 N TRP A 347 SHEET 1 AA3 3 VAL A 331 PHE A 333 0 SHEET 2 AA3 3 LEU A 376 ILE A 378 -1 O ILE A 378 N VAL A 331 SHEET 3 AA3 3 CYS A 368 VAL A 370 -1 N SER A 369 O THR A 377 SHEET 1 AA4 2 ILE A 419 GLN A 422 0 SHEET 2 AA4 2 LYS A 440 THR A 442 -1 O THR A 442 N ILE A 419 SHEET 1 AA5 5 GLN A 427 ALA A 430 0 SHEET 2 AA5 5 GLY A 495 THR A 506 1 O ASP A 504 N LEU A 429 SHEET 3 AA5 5 GLY A 484 SER A 492 -1 N TYR A 486 O ALA A 501 SHEET 4 AA5 5 VAL A 448 LYS A 453 -1 N LEU A 452 O THR A 487 SHEET 5 AA5 5 PHE A 456 PHE A 458 -1 O PHE A 456 N LYS A 453 SHEET 1 AA6 3 THR A 434 LEU A 437 0 SHEET 2 AA6 3 LEU A 473 LYS A 476 -1 O LEU A 473 N LEU A 437 SHEET 3 AA6 3 ALA A 465 ILE A 467 -1 N THR A 466 O GLN A 474 SSBOND 1 CYS A 335 CYS A 391 1555 1555 2.06 SSBOND 2 CYS A 439 CYS A 488 1555 1555 2.01 CISPEP 1 ASN A 340 PRO A 341 0 4.17 CISPEP 2 PRO A 361 GLN A 362 0 -16.18 CISPEP 3 GLN A 363 PRO A 364 0 -17.24 CISPEP 4 ASP A 444 PRO A 445 0 5.03 CISPEP 5 PHE A 458 PRO A 459 0 -2.59 CRYST1 99.749 99.749 123.465 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008099 0.00000