PDB Short entry for 5NQA HEADER TRANSFERASE 19-APR-17 5NQA TITLE CRYSTAL STRUCTURE OF GALNAC-T4 IN COMPLEX WITH THE MONOGLYCOPEPTIDE 3 CAVEAT 5NQA NGA G 101 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLYPEPTIDE GALNAC TRANSFERASE 4,PP-GANTASE 4,PROTEIN-UDP COMPND 5 ACETYLGALACTOSAMINYLTRANSFERASE 4,UDP-GALNAC:POLYPEPTIDE N- COMPND 6 ACETYLGALACTOSAMINYLTRANSFERASE 4; COMPND 7 EC: 2.4.1.41; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MONOGLYCOPEPTIDE 3; COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GALNT4; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS GALNAC-T4, GALNAC-T2, CHIMERAS, GLYCOSYLATION PREFERENCES, STD-NMR, KEYWDS 2 FLEXIBLE LINKER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DE LAS RIVAS,E.LIRA-NAVARRETE,E.J.P.DANIEL,I.COMPANON,H.COELHO, AUTHOR 2 A.DINIZ,J.JIMENEZ-BARBERO,J.M.PEREGRINA,H.CLAUSEN,F.CORZANA, AUTHOR 3 F.MARCELO,G.JIMENEZ-OSES,T.A.GERKEN,R.HURTADO-GUERRERO REVDAT 3 17-JAN-24 5NQA 1 HETSYN REVDAT 2 29-JUL-20 5NQA 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 20-DEC-17 5NQA 0 JRNL AUTH M.L.RIVAS,E.LIRA-NAVARRETE,E.J.P.DANIEL,I.COMPANON,H.COELHO, JRNL AUTH 2 A.DINIZ,J.JIMENEZ-BARBERO,J.M.PEREGRINA,H.CLAUSEN,F.CORZANA, JRNL AUTH 3 F.MARCELO,G.JIMENEZ-OSES,T.A.GERKEN,R.HURTADO-GUERRERO JRNL TITL THE INTERDOMAIN FLEXIBLE LINKER OF THE POLYPEPTIDE GALNAC JRNL TITL 2 TRANSFERASES DICTATES THEIR LONG-RANGE GLYCOSYLATION JRNL TITL 3 PREFERENCES. JRNL REF NAT COMMUN V. 8 1959 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29208955 JRNL DOI 10.1038/S41467-017-02006-0 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 111879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8037 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 373 REMARK 3 SOLVENT ATOMS : 1567 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : -0.87000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.53000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.056 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9024 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8335 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12082 ; 1.718 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19317 ; 1.051 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1055 ; 6.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 453 ;30.779 ;23.245 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1506 ;15.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 81 ;16.064 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1255 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9754 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1929 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4141 ; 1.381 ; 2.727 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4140 ; 1.379 ; 2.726 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5174 ; 2.217 ; 4.081 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5175 ; 2.218 ; 4.081 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4883 ; 1.513 ; 3.009 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4884 ; 1.513 ; 3.009 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6893 ; 2.328 ; 4.372 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10778 ; 5.521 ;33.811 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10779 ; 5.521 ;33.816 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 59 578 B 59 578 34474 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 578 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8162 -0.1028 -0.6185 REMARK 3 T TENSOR REMARK 3 T11: 0.0464 T22: 0.0083 REMARK 3 T33: 0.0460 T12: -0.0075 REMARK 3 T13: 0.0093 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.0306 L22: 0.2269 REMARK 3 L33: 0.3082 L12: 0.0537 REMARK 3 L13: -0.0059 L23: -0.0194 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0004 S13: 0.0224 REMARK 3 S21: -0.0460 S22: 0.0000 S23: 0.0125 REMARK 3 S31: 0.0124 S32: 0.0046 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 578 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3396 -21.6722 33.4234 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0049 REMARK 3 T33: 0.0422 T12: -0.0063 REMARK 3 T13: 0.0209 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.0730 L22: 0.1482 REMARK 3 L33: 0.2159 L12: -0.0796 REMARK 3 L13: -0.0209 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.0013 S13: -0.0463 REMARK 3 S21: 0.0262 S22: 0.0000 S23: 0.0328 REMARK 3 S31: -0.0370 S32: 0.0201 S33: 0.0380 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0155 REMARK 3 T33: 0.0155 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 76.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM NITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 TRP A 5 REMARK 465 THR A 6 REMARK 465 TRP A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 CYS A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 PHE A 17 REMARK 465 LEU A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 ALA A 21 REMARK 465 TYR A 22 REMARK 465 ILE A 23 REMARK 465 PHE A 24 REMARK 465 VAL A 25 REMARK 465 GLU A 26 REMARK 465 LEU A 27 REMARK 465 LEU A 28 REMARK 465 VAL A 29 REMARK 465 SER A 30 REMARK 465 THR A 31 REMARK 465 PHE A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 SER A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 37 REMARK 465 ALA A 38 REMARK 465 GLY A 39 REMARK 465 ARG A 40 REMARK 465 ALA A 41 REMARK 465 ARG A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 ARG A 47 REMARK 465 ARG A 48 REMARK 465 LEU A 49 REMARK 465 SER A 50 REMARK 465 ASP A 51 REMARK 465 LEU A 52 REMARK 465 GLN A 53 REMARK 465 LYS A 54 REMARK 465 ASN A 55 REMARK 465 THR A 56 REMARK 465 GLU A 57 REMARK 465 ARG A 367 REMARK 465 ALA A 368 REMARK 465 PRO A 369 REMARK 465 TYR A 370 REMARK 465 ALA A 371 REMARK 465 ARG A 372 REMARK 465 PRO A 373 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 TRP B 5 REMARK 465 THR B 6 REMARK 465 TRP B 7 REMARK 465 ALA B 8 REMARK 465 GLY B 9 REMARK 465 LYS B 10 REMARK 465 SER B 11 REMARK 465 CYS B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 PHE B 17 REMARK 465 LEU B 18 REMARK 465 THR B 19 REMARK 465 VAL B 20 REMARK 465 ALA B 21 REMARK 465 TYR B 22 REMARK 465 ILE B 23 REMARK 465 PHE B 24 REMARK 465 VAL B 25 REMARK 465 GLU B 26 REMARK 465 LEU B 27 REMARK 465 LEU B 28 REMARK 465 VAL B 29 REMARK 465 SER B 30 REMARK 465 THR B 31 REMARK 465 PHE B 32 REMARK 465 HIS B 33 REMARK 465 ALA B 34 REMARK 465 SER B 35 REMARK 465 ALA B 36 REMARK 465 GLY B 37 REMARK 465 ALA B 38 REMARK 465 GLY B 39 REMARK 465 ARG B 40 REMARK 465 ALA B 41 REMARK 465 ARG B 42 REMARK 465 GLU B 43 REMARK 465 LEU B 44 REMARK 465 GLY B 45 REMARK 465 SER B 46 REMARK 465 ARG B 47 REMARK 465 ARG B 48 REMARK 465 LEU B 49 REMARK 465 SER B 50 REMARK 465 ASP B 51 REMARK 465 LEU B 52 REMARK 465 GLN B 53 REMARK 465 LYS B 54 REMARK 465 ASN B 55 REMARK 465 THR B 56 REMARK 465 GLU B 57 REMARK 465 ASP B 58 REMARK 465 ALA B 368 REMARK 465 PRO B 369 REMARK 465 TYR B 370 REMARK 465 ALA B 371 REMARK 465 ARG B 372 REMARK 465 PRO B 373 REMARK 465 GLY G 1 REMARK 465 ALA G 2 REMARK 465 GLY G 4 REMARK 465 ALA G 5 REMARK 465 GLY G 6 REMARK 465 ALA G 7 REMARK 465 GLY G 8 REMARK 465 ALA G 9 REMARK 465 GLY G 10 REMARK 465 THR G 11 REMARK 465 THR G 12 REMARK 465 PRO G 13 REMARK 465 GLY G 14 REMARK 465 PRO G 15 REMARK 465 GLY G 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 435 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 434 CA LEU A 435 1.66 REMARK 500 O HOH B 737 O HOH B 1284 1.99 REMARK 500 NH2 ARG B 209 O MET B 331 2.03 REMARK 500 NH2 ARG A 209 O MET A 331 2.05 REMARK 500 O HOH A 1065 O HOH A 1179 2.16 REMARK 500 O2 EDO B 618 O HOH B 701 2.17 REMARK 500 O1 EDO A 637 O HOH A 701 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 209 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 344 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLY A 349 N - CA - C ANGL. DEV. = 28.9 DEGREES REMARK 500 ASP B 178 CB - CA - C ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG B 195 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 300 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 344 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 183 -109.95 -86.72 REMARK 500 LEU A 226 -166.67 -107.24 REMARK 500 THR A 326 -126.32 59.80 REMARK 500 ASP A 388 -128.22 50.63 REMARK 500 LYS A 492 34.13 70.47 REMARK 500 VAL A 499 -61.59 -108.04 REMARK 500 GLU B 169 149.57 -174.62 REMARK 500 LYS B 183 -122.30 -93.06 REMARK 500 LEU B 226 -167.49 -106.02 REMARK 500 PHE B 264 15.10 59.59 REMARK 500 THR B 326 -126.75 60.33 REMARK 500 ASP B 388 -129.04 50.83 REMARK 500 ASN B 466 68.94 -167.18 REMARK 500 LYS B 492 34.14 70.50 REMARK 500 VAL B 499 -63.42 -108.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 348 GLY A 349 -140.34 REMARK 500 GLY A 349 GLY A 350 49.05 REMARK 500 ASP B 464 ASN B 465 137.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 349 -12.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1361 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1363 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1364 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1365 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1366 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1367 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1368 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1369 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1370 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1371 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1372 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1373 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1374 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1375 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1376 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1377 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1378 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1379 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1380 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1381 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1382 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1383 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1384 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1385 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1386 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A1387 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1388 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1390 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A1391 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A1392 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1393 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A1394 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1395 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1396 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1397 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A1398 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1399 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1400 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1401 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A1402 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A1403 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A1404 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A1405 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH A1406 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH A1407 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A1408 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A1409 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A1410 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH A1411 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH A1412 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A1413 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A1414 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A1415 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A1416 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH A1417 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH A1418 DISTANCE = 8.29 ANGSTROMS REMARK 525 HOH A1419 DISTANCE = 8.34 ANGSTROMS REMARK 525 HOH A1420 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A1421 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A1422 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH A1423 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH A1424 DISTANCE = 9.20 ANGSTROMS REMARK 525 HOH A1425 DISTANCE = 9.27 ANGSTROMS REMARK 525 HOH A1426 DISTANCE = 9.36 ANGSTROMS REMARK 525 HOH A1427 DISTANCE = 9.44 ANGSTROMS REMARK 525 HOH A1428 DISTANCE = 9.75 ANGSTROMS REMARK 525 HOH A1429 DISTANCE = 9.96 ANGSTROMS REMARK 525 HOH A1430 DISTANCE = 10.07 ANGSTROMS REMARK 525 HOH A1431 DISTANCE = 10.13 ANGSTROMS REMARK 525 HOH A1432 DISTANCE = 10.86 ANGSTROMS REMARK 525 HOH A1433 DISTANCE = 11.89 ANGSTROMS REMARK 525 HOH A1434 DISTANCE = 12.22 ANGSTROMS REMARK 525 HOH A1435 DISTANCE = 12.60 ANGSTROMS REMARK 525 HOH A1436 DISTANCE = 12.67 ANGSTROMS REMARK 525 HOH A1437 DISTANCE = 13.20 ANGSTROMS REMARK 525 HOH A1438 DISTANCE = 14.59 ANGSTROMS REMARK 525 HOH B1445 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B1446 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1447 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1448 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B1449 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1450 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1451 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1452 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B1453 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B1454 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B1455 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B1456 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1457 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B1458 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B1459 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B1460 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B1461 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B1462 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B1463 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B1464 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B1465 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B1466 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B1467 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B1468 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B1469 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B1470 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1471 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1472 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B1473 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B1474 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B1475 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B1476 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B1477 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B1478 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B1479 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B1480 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B1481 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B1482 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B1483 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B1484 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B1485 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B1486 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B1487 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B1488 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B1489 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B1490 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B1491 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B1492 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B1493 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B1494 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B1495 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B1496 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH B1497 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH B1498 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B1499 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B1500 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH B1501 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B1502 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B1503 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH B1504 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B1505 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B1506 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH B1507 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH B1508 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH B1509 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH B1510 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH B1511 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH B1512 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH B1513 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH B1514 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH B1515 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH B1516 DISTANCE = 8.42 ANGSTROMS REMARK 525 HOH B1517 DISTANCE = 8.42 ANGSTROMS REMARK 525 HOH B1518 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH B1519 DISTANCE = 8.69 ANGSTROMS REMARK 525 HOH B1520 DISTANCE = 8.72 ANGSTROMS REMARK 525 HOH B1521 DISTANCE = 8.76 ANGSTROMS REMARK 525 HOH B1522 DISTANCE = 8.83 ANGSTROMS REMARK 525 HOH B1523 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH B1524 DISTANCE = 8.88 ANGSTROMS REMARK 525 HOH B1525 DISTANCE = 8.97 ANGSTROMS REMARK 525 HOH B1526 DISTANCE = 9.56 ANGSTROMS REMARK 525 HOH B1527 DISTANCE = 9.62 ANGSTROMS REMARK 525 HOH B1528 DISTANCE = 10.25 ANGSTROMS REMARK 525 HOH B1529 DISTANCE = 11.08 ANGSTROMS DBREF 5NQA A 1 578 UNP Q8N4A0 GALT4_HUMAN 1 578 DBREF 5NQA B 1 578 UNP Q8N4A0 GALT4_HUMAN 1 578 DBREF 5NQA G 1 16 PDB 5NQA 5NQA 1 16 SEQRES 1 A 578 MET ALA VAL ARG TRP THR TRP ALA GLY LYS SER CYS LEU SEQRES 2 A 578 LEU LEU ALA PHE LEU THR VAL ALA TYR ILE PHE VAL GLU SEQRES 3 A 578 LEU LEU VAL SER THR PHE HIS ALA SER ALA GLY ALA GLY SEQRES 4 A 578 ARG ALA ARG GLU LEU GLY SER ARG ARG LEU SER ASP LEU SEQRES 5 A 578 GLN LYS ASN THR GLU ASP LEU SER ARG PRO LEU TYR LYS SEQRES 6 A 578 LYS PRO PRO ALA ASP SER ARG ALA LEU GLY GLU TRP GLY SEQRES 7 A 578 LYS ALA SER LYS LEU GLN LEU ASN GLU ASP GLU LEU LYS SEQRES 8 A 578 GLN GLN GLU GLU LEU ILE GLU ARG TYR ALA ILE ASN ILE SEQRES 9 A 578 TYR LEU SER ASP ARG ILE SER LEU HIS ARG HIS ILE GLU SEQRES 10 A 578 ASP LYS ARG MET TYR GLU CYS LYS SER GLN LYS PHE ASN SEQRES 11 A 578 TYR ARG THR LEU PRO THR THR SER VAL ILE ILE ALA PHE SEQRES 12 A 578 TYR ASN GLU ALA TRP SER THR LEU LEU ARG THR ILE HIS SEQRES 13 A 578 SER VAL LEU GLU THR SER PRO ALA VAL LEU LEU LYS GLU SEQRES 14 A 578 ILE ILE LEU VAL ASP ASP LEU SER ASP ARG VAL TYR LEU SEQRES 15 A 578 LYS THR GLN LEU GLU THR TYR ILE SER ASN LEU ASP ARG SEQRES 16 A 578 VAL ARG LEU ILE ARG THR ASN LYS ARG GLU GLY LEU VAL SEQRES 17 A 578 ARG ALA ARG LEU ILE GLY ALA THR PHE ALA THR GLY ASP SEQRES 18 A 578 VAL LEU THR PHE LEU ASP CYS HIS CYS GLU CYS ASN SER SEQRES 19 A 578 GLY TRP LEU GLU PRO LEU LEU GLU ARG ILE GLY ARG ASP SEQRES 20 A 578 GLU THR ALA VAL VAL CYS PRO VAL ILE ASP THR ILE ASP SEQRES 21 A 578 TRP ASN THR PHE GLU PHE TYR MET GLN ILE GLY GLU PRO SEQRES 22 A 578 MET ILE GLY GLY PHE ASP TRP ARG LEU THR PHE GLN TRP SEQRES 23 A 578 HIS SER VAL PRO LYS GLN GLU ARG ASP ARG ARG ILE SER SEQRES 24 A 578 ARG ILE ASP PRO ILE ARG SER PRO THR MET ALA GLY GLY SEQRES 25 A 578 LEU PHE ALA VAL SER LYS LYS TYR PHE GLN TYR LEU GLY SEQRES 26 A 578 THR TYR ASP THR GLY MET GLU VAL TRP GLY GLY GLU ASN SEQRES 27 A 578 LEU GLU LEU SER PHE ARG VAL TRP GLN CYS GLY GLY LYS SEQRES 28 A 578 LEU GLU ILE HIS PRO CYS SER HIS VAL GLY HIS VAL PHE SEQRES 29 A 578 PRO LYS ARG ALA PRO TYR ALA ARG PRO ASN PHE LEU GLN SEQRES 30 A 578 ASN THR ALA ARG ALA ALA GLU VAL TRP MET ASP GLU TYR SEQRES 31 A 578 LYS GLU HIS PHE TYR ASN ARG ASN PRO PRO ALA ARG LYS SEQRES 32 A 578 GLU ALA TYR GLY ASP ILE SER GLU ARG LYS LEU LEU ARG SEQRES 33 A 578 GLU ARG LEU ARG CYS LYS SER PHE ASP TRP TYR LEU LYS SEQRES 34 A 578 ASN VAL PHE PRO ASN LEU HIS VAL PRO GLU ASP ARG PRO SEQRES 35 A 578 GLY TRP HIS GLY ALA ILE ARG SER ARG GLY ILE SER SER SEQRES 36 A 578 GLU CYS LEU ASP TYR ASN SER PRO ASP ASN ASN PRO THR SEQRES 37 A 578 GLY ALA ASN LEU SER LEU PHE GLY CYS HIS GLY GLN GLY SEQRES 38 A 578 GLY ASN GLN PHE PHE GLU TYR THR SER ASN LYS GLU ILE SEQRES 39 A 578 ARG PHE ASN SER VAL THR GLU LEU CYS ALA GLU VAL PRO SEQRES 40 A 578 GLU GLN LYS ASN TYR VAL GLY MET GLN ASN CYS PRO LYS SEQRES 41 A 578 ASP GLY PHE PRO VAL PRO ALA ASN ILE ILE TRP HIS PHE SEQRES 42 A 578 LYS GLU ASP GLY THR ILE PHE HIS PRO HIS SER GLY LEU SEQRES 43 A 578 CYS LEU SER ALA TYR ARG THR PRO GLU GLY ARG PRO ASP SEQRES 44 A 578 VAL GLN MET ARG THR CYS ASP ALA LEU ASP LYS ASN GLN SEQRES 45 A 578 ILE TRP SER PHE GLU LYS SEQRES 1 B 578 MET ALA VAL ARG TRP THR TRP ALA GLY LYS SER CYS LEU SEQRES 2 B 578 LEU LEU ALA PHE LEU THR VAL ALA TYR ILE PHE VAL GLU SEQRES 3 B 578 LEU LEU VAL SER THR PHE HIS ALA SER ALA GLY ALA GLY SEQRES 4 B 578 ARG ALA ARG GLU LEU GLY SER ARG ARG LEU SER ASP LEU SEQRES 5 B 578 GLN LYS ASN THR GLU ASP LEU SER ARG PRO LEU TYR LYS SEQRES 6 B 578 LYS PRO PRO ALA ASP SER ARG ALA LEU GLY GLU TRP GLY SEQRES 7 B 578 LYS ALA SER LYS LEU GLN LEU ASN GLU ASP GLU LEU LYS SEQRES 8 B 578 GLN GLN GLU GLU LEU ILE GLU ARG TYR ALA ILE ASN ILE SEQRES 9 B 578 TYR LEU SER ASP ARG ILE SER LEU HIS ARG HIS ILE GLU SEQRES 10 B 578 ASP LYS ARG MET TYR GLU CYS LYS SER GLN LYS PHE ASN SEQRES 11 B 578 TYR ARG THR LEU PRO THR THR SER VAL ILE ILE ALA PHE SEQRES 12 B 578 TYR ASN GLU ALA TRP SER THR LEU LEU ARG THR ILE HIS SEQRES 13 B 578 SER VAL LEU GLU THR SER PRO ALA VAL LEU LEU LYS GLU SEQRES 14 B 578 ILE ILE LEU VAL ASP ASP LEU SER ASP ARG VAL TYR LEU SEQRES 15 B 578 LYS THR GLN LEU GLU THR TYR ILE SER ASN LEU ASP ARG SEQRES 16 B 578 VAL ARG LEU ILE ARG THR ASN LYS ARG GLU GLY LEU VAL SEQRES 17 B 578 ARG ALA ARG LEU ILE GLY ALA THR PHE ALA THR GLY ASP SEQRES 18 B 578 VAL LEU THR PHE LEU ASP CYS HIS CYS GLU CYS ASN SER SEQRES 19 B 578 GLY TRP LEU GLU PRO LEU LEU GLU ARG ILE GLY ARG ASP SEQRES 20 B 578 GLU THR ALA VAL VAL CYS PRO VAL ILE ASP THR ILE ASP SEQRES 21 B 578 TRP ASN THR PHE GLU PHE TYR MET GLN ILE GLY GLU PRO SEQRES 22 B 578 MET ILE GLY GLY PHE ASP TRP ARG LEU THR PHE GLN TRP SEQRES 23 B 578 HIS SER VAL PRO LYS GLN GLU ARG ASP ARG ARG ILE SER SEQRES 24 B 578 ARG ILE ASP PRO ILE ARG SER PRO THR MET ALA GLY GLY SEQRES 25 B 578 LEU PHE ALA VAL SER LYS LYS TYR PHE GLN TYR LEU GLY SEQRES 26 B 578 THR TYR ASP THR GLY MET GLU VAL TRP GLY GLY GLU ASN SEQRES 27 B 578 LEU GLU LEU SER PHE ARG VAL TRP GLN CYS GLY GLY LYS SEQRES 28 B 578 LEU GLU ILE HIS PRO CYS SER HIS VAL GLY HIS VAL PHE SEQRES 29 B 578 PRO LYS ARG ALA PRO TYR ALA ARG PRO ASN PHE LEU GLN SEQRES 30 B 578 ASN THR ALA ARG ALA ALA GLU VAL TRP MET ASP GLU TYR SEQRES 31 B 578 LYS GLU HIS PHE TYR ASN ARG ASN PRO PRO ALA ARG LYS SEQRES 32 B 578 GLU ALA TYR GLY ASP ILE SER GLU ARG LYS LEU LEU ARG SEQRES 33 B 578 GLU ARG LEU ARG CYS LYS SER PHE ASP TRP TYR LEU LYS SEQRES 34 B 578 ASN VAL PHE PRO ASN LEU HIS VAL PRO GLU ASP ARG PRO SEQRES 35 B 578 GLY TRP HIS GLY ALA ILE ARG SER ARG GLY ILE SER SER SEQRES 36 B 578 GLU CYS LEU ASP TYR ASN SER PRO ASP ASN ASN PRO THR SEQRES 37 B 578 GLY ALA ASN LEU SER LEU PHE GLY CYS HIS GLY GLN GLY SEQRES 38 B 578 GLY ASN GLN PHE PHE GLU TYR THR SER ASN LYS GLU ILE SEQRES 39 B 578 ARG PHE ASN SER VAL THR GLU LEU CYS ALA GLU VAL PRO SEQRES 40 B 578 GLU GLN LYS ASN TYR VAL GLY MET GLN ASN CYS PRO LYS SEQRES 41 B 578 ASP GLY PHE PRO VAL PRO ALA ASN ILE ILE TRP HIS PHE SEQRES 42 B 578 LYS GLU ASP GLY THR ILE PHE HIS PRO HIS SER GLY LEU SEQRES 43 B 578 CYS LEU SER ALA TYR ARG THR PRO GLU GLY ARG PRO ASP SEQRES 44 B 578 VAL GLN MET ARG THR CYS ASP ALA LEU ASP LYS ASN GLN SEQRES 45 B 578 ILE TRP SER PHE GLU LYS SEQRES 1 G 16 GLY ALA THR GLY ALA GLY ALA GLY ALA GLY THR THR PRO SEQRES 2 G 16 GLY PRO GLY HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HET EDO A 612 4 HET EDO A 613 4 HET EDO A 614 4 HET EDO A 615 4 HET EDO A 616 4 HET EDO A 617 4 HET EDO A 618 4 HET EDO A 619 4 HET EDO A 620 4 HET EDO A 621 4 HET EDO A 622 4 HET EDO A 623 4 HET EDO A 624 4 HET EDO A 625 4 HET EDO A 626 4 HET EDO A 627 4 HET EDO A 628 4 HET EDO A 629 4 HET EDO A 630 4 HET EDO A 631 4 HET EDO A 632 4 HET EDO A 633 4 HET EDO A 634 4 HET EDO A 635 4 HET EDO A 636 4 HET EDO A 637 4 HET GOL A 638 6 HET GOL A 639 6 HET GOL A 640 6 HET GOL A 641 6 HET GOL A 642 6 HET GOL A 643 6 HET NGA A 644 15 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET EDO B 605 4 HET EDO B 606 4 HET EDO B 607 4 HET EDO B 608 4 HET EDO B 609 4 HET EDO B 610 4 HET EDO B 611 4 HET EDO B 612 4 HET EDO B 613 4 HET EDO B 614 4 HET EDO B 615 4 HET EDO B 616 4 HET EDO B 617 4 HET EDO B 618 4 HET EDO B 619 4 HET EDO B 620 4 HET EDO B 621 4 HET EDO B 622 4 HET EDO B 623 4 HET EDO B 624 4 HET EDO B 625 4 HET EDO B 626 4 HET EDO B 627 4 HET EDO B 628 4 HET EDO B 629 4 HET EDO B 630 4 HET EDO B 631 4 HET EDO B 632 4 HET EDO B 633 4 HET EDO B 634 4 HET GOL B 635 6 HET GOL B 636 6 HET GOL B 637 6 HET GOL B 638 6 HET NGA G 101 14 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 4 EDO 71(C2 H6 O2) FORMUL 41 GOL 10(C3 H8 O3) FORMUL 47 NGA 2(C8 H15 N O6) FORMUL 87 HOH *1567(H2 O) HELIX 1 AA1 GLY A 75 LYS A 79 5 5 HELIX 2 AA2 ASN A 86 ALA A 101 1 16 HELIX 3 AA3 ASN A 103 ASP A 108 1 6 HELIX 4 AA4 MET A 121 SER A 126 1 6 HELIX 5 AA5 ALA A 147 SER A 162 1 16 HELIX 6 AA6 ARG A 179 LEU A 182 5 4 HELIX 7 AA7 LYS A 183 SER A 191 1 9 HELIX 8 AA8 GLY A 206 ALA A 218 1 13 HELIX 9 AA9 LEU A 237 ASP A 247 1 11 HELIX 10 AB1 PRO A 290 ARG A 297 1 8 HELIX 11 AB2 LYS A 318 LEU A 324 1 7 HELIX 12 AB3 GLU A 337 CYS A 348 1 12 HELIX 13 AB4 PHE A 375 MET A 387 1 13 HELIX 14 AB5 TYR A 390 ASN A 398 1 9 HELIX 15 AB6 PRO A 399 GLU A 404 5 6 HELIX 16 AB7 ILE A 409 LEU A 419 1 11 HELIX 17 AB8 SER A 423 VAL A 431 1 9 HELIX 18 AB9 GLY A 481 PHE A 485 5 5 HELIX 19 AC1 PRO A 526 ILE A 530 5 5 HELIX 20 AC2 ASP A 569 GLN A 572 5 4 HELIX 21 AC3 GLY B 75 LYS B 79 5 5 HELIX 22 AC4 ASN B 86 ALA B 101 1 16 HELIX 23 AC5 ASN B 103 ASP B 108 1 6 HELIX 24 AC6 MET B 121 GLN B 127 1 7 HELIX 25 AC7 ALA B 147 SER B 162 1 16 HELIX 26 AC8 ARG B 179 LEU B 182 5 4 HELIX 27 AC9 LYS B 183 ASN B 192 1 10 HELIX 28 AD1 GLY B 206 ALA B 218 1 13 HELIX 29 AD2 LEU B 237 GLY B 245 1 9 HELIX 30 AD3 PRO B 290 ARG B 297 1 8 HELIX 31 AD4 LYS B 318 LEU B 324 1 7 HELIX 32 AD5 GLU B 337 CYS B 348 1 12 HELIX 33 AD6 PHE B 375 MET B 387 1 13 HELIX 34 AD7 TYR B 390 ASN B 398 1 9 HELIX 35 AD8 PRO B 399 GLU B 404 5 6 HELIX 36 AD9 ILE B 409 LEU B 419 1 11 HELIX 37 AE1 SER B 423 VAL B 431 1 9 HELIX 38 AE2 GLY B 481 PHE B 485 5 5 HELIX 39 AE3 PRO B 526 ILE B 530 5 5 HELIX 40 AE4 ASP B 569 GLN B 572 5 4 SHEET 1 AA1 5 VAL A 196 ARG A 200 0 SHEET 2 AA1 5 LEU A 167 ASP A 174 1 N LEU A 172 O ARG A 197 SHEET 3 AA1 5 THR A 137 PHE A 143 1 N VAL A 139 O ILE A 171 SHEET 4 AA1 5 VAL A 222 PHE A 225 1 O THR A 224 N ILE A 140 SHEET 5 AA1 5 PHE A 314 SER A 317 -1 O VAL A 316 N LEU A 223 SHEET 1 AA2 4 CYS A 230 CYS A 232 0 SHEET 2 AA2 4 LYS A 351 VAL A 363 -1 O GLY A 361 N GLU A 231 SHEET 3 AA2 4 ALA A 250 ILE A 259 1 N VAL A 255 O SER A 358 SHEET 4 AA2 4 PHE A 266 TYR A 267 -1 O TYR A 267 N THR A 258 SHEET 1 AA3 3 CYS A 230 CYS A 232 0 SHEET 2 AA3 3 LYS A 351 VAL A 363 -1 O GLY A 361 N GLU A 231 SHEET 3 AA3 3 ILE A 304 ARG A 305 -1 N ILE A 304 O ILE A 354 SHEET 1 AA4 2 ILE A 275 PHE A 278 0 SHEET 2 AA4 2 PHE A 284 HIS A 287 -1 O HIS A 287 N ILE A 275 SHEET 1 AA5 6 GLY A 514 ASN A 517 0 SHEET 2 AA5 6 LEU A 502 GLU A 505 -1 N GLU A 505 O GLY A 514 SHEET 3 AA5 6 ILE A 494 PHE A 496 -1 N ILE A 494 O ALA A 504 SHEET 4 AA5 6 PHE A 486 TYR A 488 -1 N GLU A 487 O ARG A 495 SHEET 5 AA5 6 HIS A 445 SER A 450 -1 N GLY A 446 O PHE A 486 SHEET 6 AA5 6 TRP A 574 GLU A 577 -1 O SER A 575 N ARG A 449 SHEET 1 AA6 2 GLU A 456 ASP A 459 0 SHEET 2 AA6 2 SER A 473 GLY A 476 -1 O PHE A 475 N CYS A 457 SHEET 1 AA7 4 HIS A 532 PHE A 533 0 SHEET 2 AA7 4 ILE A 539 HIS A 541 -1 O PHE A 540 N HIS A 532 SHEET 3 AA7 4 LEU A 546 ARG A 552 -1 O LEU A 546 N HIS A 541 SHEET 4 AA7 4 PRO A 558 ARG A 563 -1 O ARG A 563 N CYS A 547 SHEET 1 AA8 5 VAL B 196 ARG B 200 0 SHEET 2 AA8 5 LEU B 167 ASP B 174 1 N LEU B 172 O ARG B 197 SHEET 3 AA8 5 THR B 137 PHE B 143 1 N VAL B 139 O ILE B 171 SHEET 4 AA8 5 VAL B 222 PHE B 225 1 O THR B 224 N SER B 138 SHEET 5 AA8 5 PHE B 314 SER B 317 -1 O VAL B 316 N LEU B 223 SHEET 1 AA9 4 CYS B 230 CYS B 232 0 SHEET 2 AA9 4 LYS B 351 VAL B 363 -1 O GLY B 361 N GLU B 231 SHEET 3 AA9 4 ALA B 250 ILE B 259 1 N VAL B 255 O SER B 358 SHEET 4 AA9 4 PHE B 266 TYR B 267 -1 O TYR B 267 N THR B 258 SHEET 1 AB1 3 CYS B 230 CYS B 232 0 SHEET 2 AB1 3 LYS B 351 VAL B 363 -1 O GLY B 361 N GLU B 231 SHEET 3 AB1 3 ILE B 304 ARG B 305 -1 N ILE B 304 O ILE B 354 SHEET 1 AB2 2 ILE B 275 PHE B 278 0 SHEET 2 AB2 2 PHE B 284 HIS B 287 -1 O HIS B 287 N ILE B 275 SHEET 1 AB3 6 GLY B 514 ASN B 517 0 SHEET 2 AB3 6 LEU B 502 GLU B 505 -1 N GLU B 505 O GLY B 514 SHEET 3 AB3 6 ILE B 494 PHE B 496 -1 N ILE B 494 O ALA B 504 SHEET 4 AB3 6 PHE B 486 TYR B 488 -1 N GLU B 487 O ARG B 495 SHEET 5 AB3 6 HIS B 445 SER B 450 -1 N GLY B 446 O PHE B 486 SHEET 6 AB3 6 TRP B 574 GLU B 577 -1 O SER B 575 N ARG B 449 SHEET 1 AB4 2 GLU B 456 ASP B 459 0 SHEET 2 AB4 2 SER B 473 GLY B 476 -1 O PHE B 475 N CYS B 457 SHEET 1 AB5 4 HIS B 532 PHE B 533 0 SHEET 2 AB5 4 ILE B 539 HIS B 541 -1 O PHE B 540 N HIS B 532 SHEET 3 AB5 4 LEU B 546 ARG B 552 -1 O LEU B 546 N HIS B 541 SHEET 4 AB5 4 PRO B 558 ARG B 563 -1 O ARG B 563 N CYS B 547 SSBOND 1 CYS A 124 CYS A 357 1555 1555 1.99 SSBOND 2 CYS A 348 CYS A 421 1555 1555 2.03 SSBOND 3 CYS A 457 CYS A 477 1555 1555 2.08 SSBOND 4 CYS A 503 CYS A 518 1555 1555 2.05 SSBOND 5 CYS A 547 CYS A 565 1555 1555 2.03 SSBOND 6 CYS B 124 CYS B 357 1555 1555 2.01 SSBOND 7 CYS B 348 CYS B 421 1555 1555 2.05 SSBOND 8 CYS B 457 CYS B 477 1555 1555 2.05 SSBOND 9 CYS B 503 CYS B 518 1555 1555 2.03 SSBOND 10 CYS B 547 CYS B 565 1555 1555 2.05 LINK OG1 THR G 3 C1 NGA G 101 1555 1555 1.36 CRYST1 65.447 79.881 88.614 116.47 96.74 104.72 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015280 0.004013 0.004366 0.00000 SCALE2 0.000000 0.012943 0.007377 0.00000 SCALE3 0.000000 0.000000 0.013080 0.00000