PDB Short entry for 5NTN HEADER SIGNALING PROTEIN 28-APR-17 5NTN TITLE STRUCTURAL STATES OF RORGT: X-RAY ELUCIDATION OF MOLECULAR MECHANISMS TITLE 2 AND BINDING INTERACTIONS FOR NATURAL AND SYNTHETIC COMPOUNDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 6 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED COMPND 7 ORPHAN RECEPTOR-GAMMA; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NUCLEAR RECEPTOR-INTERACTING PROTEIN 1; COMPND 12 CHAIN: P, Q, R, S; COMPND 13 SYNONYM: NUCLEAR FACTOR RIP140,RECEPTOR-INTERACTING PROTEIN 140 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RORC, NR1F3, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-DERIVED VECTOR; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR HORMONE RECEPTOR, LIGAND-BINDING DOMAIN, AGONIST, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KALLEN REVDAT 3 17-JAN-24 5NTN 1 REMARK REVDAT 2 19-JUL-17 5NTN 1 REVDAT 1 21-JUN-17 5NTN 0 JRNL AUTH J.KALLEN,A.IZAAC,C.BE,L.ARISTA,D.ORAIN,K.KAUPMANN, JRNL AUTH 2 C.GUNTERMANN,K.HOEGENAUER,S.HINTERMANN JRNL TITL STRUCTURAL STATES OF ROR GAMMA T: X-RAY ELUCIDATION OF JRNL TITL 2 MOLECULAR MECHANISMS AND BINDING INTERACTIONS FOR NATURAL JRNL TITL 3 AND SYNTHETIC COMPOUNDS. JRNL REF CHEMMEDCHEM V. 12 1014 2017 JRNL REFN ESSN 1860-7187 JRNL PMID 28590087 JRNL DOI 10.1002/CMDC.201700278 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 73461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2468 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 653 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8608 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11652 ; 0.931 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1019 ; 4.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 414 ;33.815 ;23.116 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1563 ;12.759 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;17.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1298 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6394 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5NTN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-17. REMARK 100 THE DEPOSITION ID IS D_1200004713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90013 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S0X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 0.04M NAFORMATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.84200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 262 REMARK 465 PRO A 263 REMARK 465 GLU A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 SER A 512 REMARK 465 PRO A 513 REMARK 465 VAL A 514 REMARK 465 GLY A 515 REMARK 465 LEU A 516 REMARK 465 SER A 517 REMARK 465 LYS A 518 REMARK 465 GLY B 262 REMARK 465 PRO B 263 REMARK 465 THR B 508 REMARK 465 GLU B 509 REMARK 465 THR B 510 REMARK 465 GLU B 511 REMARK 465 SER B 512 REMARK 465 PRO B 513 REMARK 465 VAL B 514 REMARK 465 GLY B 515 REMARK 465 LEU B 516 REMARK 465 SER B 517 REMARK 465 LYS B 518 REMARK 465 GLY C 262 REMARK 465 PRO C 263 REMARK 465 GLU C 509 REMARK 465 THR C 510 REMARK 465 GLU C 511 REMARK 465 SER C 512 REMARK 465 PRO C 513 REMARK 465 VAL C 514 REMARK 465 GLY C 515 REMARK 465 LEU C 516 REMARK 465 SER C 517 REMARK 465 LYS C 518 REMARK 465 GLY D 262 REMARK 465 PRO D 263 REMARK 465 THR D 508 REMARK 465 GLU D 509 REMARK 465 THR D 510 REMARK 465 GLU D 511 REMARK 465 SER D 512 REMARK 465 PRO D 513 REMARK 465 VAL D 514 REMARK 465 GLY D 515 REMARK 465 LEU D 516 REMARK 465 SER D 517 REMARK 465 LYS D 518 REMARK 465 ASN P 493 REMARK 465 SER P 494 REMARK 465 HIS P 495 REMARK 465 GLN P 496 REMARK 465 LYS P 497 REMARK 465 VAL P 498 REMARK 465 HIS P 507 REMARK 465 LYS P 508 REMARK 465 ASN P 509 REMARK 465 GLU P 510 REMARK 465 GLU P 511 REMARK 465 ASN P 512 REMARK 465 ASN Q 493 REMARK 465 SER Q 494 REMARK 465 HIS Q 495 REMARK 465 GLN Q 496 REMARK 465 LYS Q 497 REMARK 465 VAL Q 498 REMARK 465 HIS Q 507 REMARK 465 LYS Q 508 REMARK 465 ASN Q 509 REMARK 465 GLU Q 510 REMARK 465 GLU Q 511 REMARK 465 ASN Q 512 REMARK 465 ASN R 493 REMARK 465 SER R 494 REMARK 465 HIS R 495 REMARK 465 GLN R 496 REMARK 465 LYS R 497 REMARK 465 VAL R 498 REMARK 465 HIS R 507 REMARK 465 LYS R 508 REMARK 465 ASN R 509 REMARK 465 GLU R 510 REMARK 465 GLU R 511 REMARK 465 ASN R 512 REMARK 465 ASN S 493 REMARK 465 SER S 494 REMARK 465 HIS S 495 REMARK 465 GLN S 496 REMARK 465 LYS S 497 REMARK 465 VAL S 498 REMARK 465 LYS S 508 REMARK 465 ASN S 509 REMARK 465 GLU S 510 REMARK 465 GLU S 511 REMARK 465 ASN S 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 286 -58.58 77.18 REMARK 500 CYS A 393 56.77 -142.22 REMARK 500 GLN B 286 -58.53 73.38 REMARK 500 CYS B 393 55.97 -144.24 REMARK 500 GLU B 435 67.38 -112.63 REMARK 500 GLN C 286 -56.60 73.09 REMARK 500 GLU C 435 61.81 -115.56 REMARK 500 HIS C 458 33.33 34.53 REMARK 500 GLN D 286 -58.86 76.81 REMARK 500 CYS D 393 52.36 -150.03 REMARK 500 GLU D 435 62.83 -102.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 98H A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 98H B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 98H C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 98H D 601 DBREF 5NTN A 263 518 UNP P51449 RORG_HUMAN 263 518 DBREF 5NTN B 263 518 UNP P51449 RORG_HUMAN 263 518 DBREF 5NTN C 263 518 UNP P51449 RORG_HUMAN 263 518 DBREF 5NTN D 263 518 UNP P51449 RORG_HUMAN 263 518 DBREF 5NTN P 493 512 UNP P48552 NRIP1_HUMAN 493 512 DBREF 5NTN Q 493 512 UNP P48552 NRIP1_HUMAN 493 512 DBREF 5NTN R 493 512 UNP P48552 NRIP1_HUMAN 493 512 DBREF 5NTN S 493 512 UNP P48552 NRIP1_HUMAN 493 512 SEQADV 5NTN GLY A 262 UNP P51449 EXPRESSION TAG SEQADV 5NTN SER A 455 UNP P51449 CYS 455 ENGINEERED MUTATION SEQADV 5NTN GLY B 262 UNP P51449 EXPRESSION TAG SEQADV 5NTN SER B 455 UNP P51449 CYS 455 ENGINEERED MUTATION SEQADV 5NTN GLY C 262 UNP P51449 EXPRESSION TAG SEQADV 5NTN SER C 455 UNP P51449 CYS 455 ENGINEERED MUTATION SEQADV 5NTN GLY D 262 UNP P51449 EXPRESSION TAG SEQADV 5NTN SER D 455 UNP P51449 CYS 455 ENGINEERED MUTATION SEQRES 1 A 257 GLY PRO TYR ALA SER LEU THR GLU ILE GLU HIS LEU VAL SEQRES 2 A 257 GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU SEQRES 3 A 257 ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SEQRES 4 A 257 SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET SEQRES 5 A 257 TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU SEQRES 6 A 257 ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER SEQRES 7 A 257 GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU SEQRES 8 A 257 LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET SEQRES 9 A 257 CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE SEQRES 10 A 257 GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU SEQRES 11 A 257 GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER SEQRES 12 A 257 HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE SEQRES 13 A 257 ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG SEQRES 14 A 257 PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN SEQRES 15 A 257 TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SER LYS SEQRES 16 A 257 THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS SEQRES 17 A 257 GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG SEQRES 18 A 257 LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL VAL GLN SEQRES 19 A 257 ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SER THR SEQRES 20 A 257 GLU THR GLU SER PRO VAL GLY LEU SER LYS SEQRES 1 B 257 GLY PRO TYR ALA SER LEU THR GLU ILE GLU HIS LEU VAL SEQRES 2 B 257 GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU SEQRES 3 B 257 ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SEQRES 4 B 257 SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET SEQRES 5 B 257 TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU SEQRES 6 B 257 ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER SEQRES 7 B 257 GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU SEQRES 8 B 257 LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET SEQRES 9 B 257 CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE SEQRES 10 B 257 GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU SEQRES 11 B 257 GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER SEQRES 12 B 257 HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE SEQRES 13 B 257 ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG SEQRES 14 B 257 PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN SEQRES 15 B 257 TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SER LYS SEQRES 16 B 257 THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS SEQRES 17 B 257 GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG SEQRES 18 B 257 LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL VAL GLN SEQRES 19 B 257 ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SER THR SEQRES 20 B 257 GLU THR GLU SER PRO VAL GLY LEU SER LYS SEQRES 1 C 257 GLY PRO TYR ALA SER LEU THR GLU ILE GLU HIS LEU VAL SEQRES 2 C 257 GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU SEQRES 3 C 257 ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SEQRES 4 C 257 SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET SEQRES 5 C 257 TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU SEQRES 6 C 257 ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER SEQRES 7 C 257 GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU SEQRES 8 C 257 LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET SEQRES 9 C 257 CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE SEQRES 10 C 257 GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU SEQRES 11 C 257 GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER SEQRES 12 C 257 HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE SEQRES 13 C 257 ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG SEQRES 14 C 257 PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN SEQRES 15 C 257 TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SER LYS SEQRES 16 C 257 THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS SEQRES 17 C 257 GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG SEQRES 18 C 257 LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL VAL GLN SEQRES 19 C 257 ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SER THR SEQRES 20 C 257 GLU THR GLU SER PRO VAL GLY LEU SER LYS SEQRES 1 D 257 GLY PRO TYR ALA SER LEU THR GLU ILE GLU HIS LEU VAL SEQRES 2 D 257 GLN SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU SEQRES 3 D 257 ARG LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SEQRES 4 D 257 SER ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET SEQRES 5 D 257 TRP GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU SEQRES 6 D 257 ALA ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER SEQRES 7 D 257 GLY PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU SEQRES 8 D 257 LEU LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET SEQRES 9 D 257 CYS ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE SEQRES 10 D 257 GLU GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU SEQRES 11 D 257 GLY CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER SEQRES 12 D 257 HIS SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE SEQRES 13 D 257 ALA LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG SEQRES 14 D 257 PRO GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN SEQRES 15 D 257 TYR ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU SER LYS SEQRES 16 D 257 THR HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS SEQRES 17 D 257 GLY LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG SEQRES 18 D 257 LEU GLN ILE PHE GLN HIS LEU HIS PRO ILE VAL VAL GLN SEQRES 19 D 257 ALA ALA PHE PRO PRO LEU TYR LYS GLU LEU PHE SER THR SEQRES 20 D 257 GLU THR GLU SER PRO VAL GLY LEU SER LYS SEQRES 1 P 20 ASN SER HIS GLN LYS VAL THR LEU LEU GLN LEU LEU LEU SEQRES 2 P 20 GLY HIS LYS ASN GLU GLU ASN SEQRES 1 Q 20 ASN SER HIS GLN LYS VAL THR LEU LEU GLN LEU LEU LEU SEQRES 2 Q 20 GLY HIS LYS ASN GLU GLU ASN SEQRES 1 R 20 ASN SER HIS GLN LYS VAL THR LEU LEU GLN LEU LEU LEU SEQRES 2 R 20 GLY HIS LYS ASN GLU GLU ASN SEQRES 1 S 20 ASN SER HIS GLN LYS VAL THR LEU LEU GLN LEU LEU LEU SEQRES 2 S 20 GLY HIS LYS ASN GLU GLU ASN HET 98H A 601 33 HET 98H B 601 33 HET 98H C 601 33 HET 98H D 601 33 HETNAM 98H (5R,10S,13R,14R,17R)-17-((R,E)-7-HYDROXY-6-METHYLHEPT- HETNAM 2 98H 5-EN-2-YL)-4,4,10,13,14-PENTAMETHYL-1,2,5,6,10,11,12, HETNAM 3 98H 13,14,15,16,17-DODECAHYDRO-3H- HETNAM 4 98H CYCLOPENTA[A]PHENANTHRENE-3,7(4H)-DIONE FORMUL 9 98H 4(C30 H46 O3) FORMUL 13 HOH *653(H2 O) HELIX 1 AA1 SER A 266 CYS A 285 1 20 HELIX 2 AA2 ARG A 288 GLN A 295 1 8 HELIX 3 AA3 ARG A 296 ASN A 298 5 3 HELIX 4 AA4 SER A 301 ARG A 310 1 10 HELIX 5 AA5 SER A 312 LEU A 338 1 27 HELIX 6 AA6 CYS A 345 MET A 365 1 21 HELIX 7 AA7 GLY A 384 GLY A 392 5 9 HELIX 8 AA8 CYS A 393 ALA A 409 1 17 HELIX 9 AA9 SER A 413 ILE A 426 1 14 HELIX 10 AB1 GLU A 435 THR A 457 1 23 HELIX 11 AB2 ARG A 459 LEU A 466 5 8 HELIX 12 AB3 PRO A 468 HIS A 490 1 23 HELIX 13 AB4 HIS A 490 PHE A 498 1 9 HELIX 14 AB5 PRO A 499 SER A 507 1 9 HELIX 15 AB6 SER B 266 CYS B 285 1 20 HELIX 16 AB7 ARG B 288 GLN B 295 1 8 HELIX 17 AB8 SER B 301 ARG B 310 1 10 HELIX 18 AB9 SER B 312 LEU B 338 1 27 HELIX 19 AC1 GLY B 340 LEU B 344 5 5 HELIX 20 AC2 CYS B 345 MET B 365 1 21 HELIX 21 AC3 GLY B 384 GLY B 392 5 9 HELIX 22 AC4 CYS B 393 ALA B 409 1 17 HELIX 23 AC5 SER B 413 ILE B 426 1 14 HELIX 24 AC6 GLU B 435 THR B 457 1 23 HELIX 25 AC7 ARG B 459 LEU B 466 5 8 HELIX 26 AC8 PRO B 468 HIS B 490 1 23 HELIX 27 AC9 HIS B 490 PHE B 498 1 9 HELIX 28 AD1 PRO B 499 SER B 507 1 9 HELIX 29 AD2 SER C 266 CYS C 285 1 20 HELIX 30 AD3 ARG C 288 GLN C 295 1 8 HELIX 31 AD4 SER C 301 LYS C 311 1 11 HELIX 32 AD5 SER C 312 ARG C 337 1 26 HELIX 33 AD6 CYS C 345 MET C 365 1 21 HELIX 34 AD7 GLY C 384 GLY C 392 5 9 HELIX 35 AD8 CYS C 393 ALA C 409 1 17 HELIX 36 AD9 SER C 413 ILE C 426 1 14 HELIX 37 AE1 GLU C 435 LYS C 456 1 22 HELIX 38 AE2 THR C 457 HIS C 458 5 2 HELIX 39 AE3 ARG C 459 ALA C 464 5 6 HELIX 40 AE4 PRO C 468 HIS C 490 1 23 HELIX 41 AE5 HIS C 490 PHE C 498 1 9 HELIX 42 AE6 PRO C 499 SER C 507 1 9 HELIX 43 AE7 SER D 266 CYS D 285 1 20 HELIX 44 AE8 ARG D 288 GLN D 295 1 8 HELIX 45 AE9 ARG D 296 ASN D 298 5 3 HELIX 46 AF1 SER D 301 LYS D 311 1 11 HELIX 47 AF2 SER D 312 LEU D 338 1 27 HELIX 48 AF3 LEU D 338 GLU D 343 1 6 HELIX 49 AF4 CYS D 345 MET D 365 1 21 HELIX 50 AF5 GLY D 384 GLY D 392 5 9 HELIX 51 AF6 CYS D 393 ALA D 409 1 17 HELIX 52 AF7 SER D 413 ILE D 426 1 14 HELIX 53 AF8 GLU D 435 LYS D 456 1 22 HELIX 54 AF9 THR D 457 HIS D 458 5 2 HELIX 55 AG1 ARG D 459 ALA D 464 5 6 HELIX 56 AG2 PRO D 468 HIS D 490 1 23 HELIX 57 AG3 HIS D 490 PHE D 498 1 9 HELIX 58 AG4 PRO D 499 SER D 507 1 9 HELIX 59 AG5 LEU P 500 GLY P 506 1 7 HELIX 60 AG6 LEU Q 500 GLY Q 506 1 7 HELIX 61 AG7 LEU R 500 LEU R 505 1 6 HELIX 62 AG8 LEU S 500 GLY S 506 1 7 SHEET 1 AA1 3 TYR A 369 ASN A 370 0 SHEET 2 AA1 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370 SHEET 3 AA1 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378 SHEET 1 AA2 3 TYR B 369 ASN B 370 0 SHEET 2 AA2 3 THR B 375 PHE B 378 -1 O THR B 375 N ASN B 370 SHEET 3 AA2 3 LYS B 381 GLY B 383 -1 O LYS B 381 N PHE B 378 SHEET 1 AA3 3 TYR C 369 ASN C 370 0 SHEET 2 AA3 3 THR C 375 PHE C 378 -1 O THR C 375 N ASN C 370 SHEET 3 AA3 3 LYS C 381 GLY C 383 -1 O LYS C 381 N PHE C 378 SHEET 1 AA4 3 TYR D 369 ASN D 370 0 SHEET 2 AA4 3 THR D 375 PHE D 378 -1 O THR D 375 N ASN D 370 SHEET 3 AA4 3 LYS D 381 GLY D 383 -1 O LYS D 381 N PHE D 378 SITE 1 AC1 9 GLN A 286 TRP A 317 HIS A 323 LEU A 324 SITE 2 AC1 9 PHE A 377 HIS A 479 TYR A 502 HOH A 749 SITE 3 AC1 9 HOH A 798 SITE 1 AC2 9 GLN B 286 HIS B 323 LEU B 324 PHE B 377 SITE 2 AC2 9 PHE B 378 HIS B 479 TYR B 502 HOH B 754 SITE 3 AC2 9 HOH B 769 SITE 1 AC3 8 GLN C 286 HIS C 323 LEU C 324 PHE C 377 SITE 2 AC3 8 HIS C 479 TYR C 502 HOH C 751 HOH C 764 SITE 1 AC4 10 GLN D 286 TRP D 317 HIS D 323 LEU D 324 SITE 2 AC4 10 PHE D 377 PHE D 378 HIS D 479 TYR D 502 SITE 3 AC4 10 HOH D 725 HOH D 759 CRYST1 86.238 69.684 97.208 90.00 107.94 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011596 0.000000 0.003755 0.00000 SCALE2 0.000000 0.014350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010813 0.00000