PDB Short entry for 5O2V HEADER RNA BINDING PROTEIN 22-MAY-17 5O2V TITLE NMR STRUCTURE OF TIA-1 RRM1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLYSIN TIA-1 ISOFORM P40; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM1 DOMAIN, UNP RESIDUES 1-92; COMPND 5 SYNONYM: RNA-BINDING PROTEIN TIA-1,T-CELL-RESTRICTED INTRACELLULAR COMPND 6 ANTIGEN-1,TIA-1,P40-TIA-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RRM, TIA-1, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.K.A.JAGTAP REVDAT 5 14-JUN-23 5O2V 1 REMARK REVDAT 4 08-MAY-19 5O2V 1 REMARK REVDAT 3 09-AUG-17 5O2V 1 JRNL REVDAT 2 05-JUL-17 5O2V 1 JRNL REVDAT 1 28-JUN-17 5O2V 0 JRNL AUTH M.SONNTAG,P.K.A.JAGTAP,B.SIMON,M.S.APPAVOU,A.GEERLOF, JRNL AUTH 2 R.STEHLE,F.GABEL,J.HENNIG,M.SATTLER JRNL TITL SEGMENTAL, DOMAIN-SELECTIVE PERDEUTERATION AND SMALL-ANGLE JRNL TITL 2 NEUTRON SCATTERING FOR STRUCTURAL ANALYSIS OF MULTI-DOMAIN JRNL TITL 3 PROTEINS. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 9322 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28636238 JRNL DOI 10.1002/ANIE.201702904 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200005072. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM UNIFORM 15N, 13C REMARK 210 LABELLING PROTEIN, 90% H2O/10% REMARK 210 D2O; 0.5 MM UNIFORM 15N REMARK 210 LABELLING PROTEIN, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY; 3D REMARK 210 HNCACB; 3D HNCO; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 SER A 15 HD2 LYS A 74 1.35 REMARK 500 HG SER A 15 OD2 ASP A 17 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 5 75.69 -119.19 REMARK 500 1 ASN A 13 30.80 72.80 REMARK 500 1 MET A 72 -77.21 66.71 REMARK 500 1 GLN A 87 90.35 61.79 REMARK 500 2 LYS A 7 -26.12 79.72 REMARK 500 2 ASN A 35 147.75 -171.86 REMARK 500 2 ALA A 43 145.60 78.24 REMARK 500 2 MET A 72 -50.45 72.99 REMARK 500 2 SER A 86 -67.96 -107.33 REMARK 500 3 LYS A 7 -45.91 73.66 REMARK 500 3 ASN A 13 5.82 175.71 REMARK 500 3 ASP A 90 89.05 64.64 REMARK 500 4 LYS A 7 -46.58 74.68 REMARK 500 4 ASN A 13 59.77 71.53 REMARK 500 4 THR A 82 -162.47 -77.61 REMARK 500 4 PRO A 84 69.92 -66.89 REMARK 500 4 LYS A 88 76.93 60.47 REMARK 500 5 LYS A 7 -47.25 75.54 REMARK 500 5 ALA A 43 -51.70 -131.17 REMARK 500 5 MET A 72 -64.35 69.46 REMARK 500 5 LYS A 88 -1.58 -151.12 REMARK 500 6 PRO A 6 103.11 -58.39 REMARK 500 6 ASN A 13 59.23 72.73 REMARK 500 6 SER A 85 -78.08 68.12 REMARK 500 6 SER A 86 10.11 -146.47 REMARK 500 6 GLN A 87 178.72 65.98 REMARK 500 7 LYS A 7 -44.29 73.17 REMARK 500 7 ASN A 13 30.15 70.92 REMARK 500 7 ASN A 45 -88.79 -107.48 REMARK 500 7 MET A 72 -80.04 68.41 REMARK 500 7 LYS A 88 89.47 -166.80 REMARK 500 8 ASN A 13 40.53 73.03 REMARK 500 8 ALA A 43 174.41 179.65 REMARK 500 8 PRO A 47 155.05 -47.05 REMARK 500 8 PRO A 84 95.13 -62.06 REMARK 500 8 LYS A 89 -51.09 -137.06 REMARK 500 8 ASP A 90 -161.29 -110.48 REMARK 500 8 THR A 91 92.58 64.70 REMARK 500 9 LYS A 7 -14.94 71.25 REMARK 500 9 ASP A 41 -163.72 -102.12 REMARK 500 9 THR A 42 1.90 -67.36 REMARK 500 9 ALA A 43 -13.56 75.71 REMARK 500 9 ASN A 45 -140.42 -111.27 REMARK 500 9 MET A 72 -71.42 68.25 REMARK 500 9 SER A 85 43.94 -77.97 REMARK 500 9 LYS A 88 -48.36 70.43 REMARK 500 10 LYS A 7 -9.18 73.82 REMARK 500 10 ASN A 13 49.86 75.87 REMARK 500 10 ALA A 43 -33.51 -133.28 REMARK 500 10 PRO A 47 132.31 -38.17 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34144 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF TIA-1 RRM1 DOMAIN DBREF 5O2V A 1 92 UNP P31483 TIA1_HUMAN 1 92 SEQRES 1 A 92 MET GLU ASP GLU MET PRO LYS THR LEU TYR VAL GLY ASN SEQRES 2 A 92 LEU SER ARG ASP VAL THR GLU ALA LEU ILE LEU GLN LEU SEQRES 3 A 92 PHE SER GLN ILE GLY PRO CYS LYS ASN CYS LYS MET ILE SEQRES 4 A 92 MET ASP THR ALA GLY ASN ASP PRO TYR CYS PHE VAL GLU SEQRES 5 A 92 PHE HIS GLU HIS ARG HIS ALA ALA ALA ALA LEU ALA ALA SEQRES 6 A 92 MET ASN GLY ARG LYS ILE MET GLY LYS GLU VAL LYS VAL SEQRES 7 A 92 ASN TRP ALA THR THR PRO SER SER GLN LYS LYS ASP THR SEQRES 8 A 92 SER HELIX 1 AA1 MET A 1 MET A 5 5 5 HELIX 2 AA2 THR A 19 GLN A 29 1 11 HELIX 3 AA3 GLU A 55 ASN A 67 1 13 SHEET 1 AA1 4 CYS A 33 ILE A 39 0 SHEET 2 AA1 4 TYR A 48 PHE A 53 -1 O GLU A 52 N LYS A 34 SHEET 3 AA1 4 THR A 8 GLY A 12 -1 N LEU A 9 O VAL A 51 SHEET 4 AA1 4 LYS A 77 ALA A 81 -1 O ASN A 79 N TYR A 10 SHEET 1 AA2 2 LYS A 70 ILE A 71 0 SHEET 2 AA2 2 LYS A 74 GLU A 75 -1 O LYS A 74 N ILE A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000