PDB Short entry for 5O9S HEADER TRANSFERASE 20-JUN-17 5O9S TITLE HSNMT1 IN COMPLEX WITH COA AND MYRISTOYLATED-GKSNSKLK OCTAPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 99-496; COMPND 5 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE 1,TYPE I N- COMPND 6 MYRISTOYLTRANSFERASE,PEPTIDE N-MYRISTOYLTRANSFERASE 1; COMPND 7 EC: 2.3.1.97; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NEURONAL CALCIUM SENSOR 1; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 2-9; COMPND 13 SYNONYM: NCS-1,FREQUENIN HOMOLOG,FREQUENIN-LIKE PROTEIN,FREQUENIN- COMPND 14 LIKE UBIQUITOUS PROTEIN; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: MYRISTOYLATED PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NMT1, NMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 DERIVATIVE; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE, GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1 N- KEYWDS 2 MYRISTOYLTRANSFERASE 1, N-MYRISTOYLTRANSFERASE TYPE1, NMT1, NMT, KEYWDS 3 ACYLTRANSFERASE, MYR-PEPTIDE, COA, MYR-COA, MYRISTOYL, GNAT EXPDTA X-RAY DIFFRACTION AUTHOR C.DIAN,T.MEINNEL,C.GIGLIONE REVDAT 3 17-JAN-24 5O9S 1 REMARK REVDAT 2 07-NOV-18 5O9S 1 JRNL REVDAT 1 27-JUN-18 5O9S 0 JRNL AUTH B.CASTREC,C.DIAN,S.CICCONE,C.L.EBERT,W.V.BIENVENUT, JRNL AUTH 2 J.P.LE CAER,J.M.STEYAERT,C.GIGLIONE,T.MEINNEL JRNL TITL STRUCTURAL AND GENOMIC DECODING OF HUMAN AND PLANT JRNL TITL 2 MYRISTOYLOMES REVEALS A DEFINITIVE RECOGNITION PATTERN. JRNL REF NAT. CHEM. BIOL. V. 14 671 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29892081 JRNL DOI 10.1038/S41589-018-0077-5 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6250 - 5.3980 1.00 3000 137 0.1995 0.2080 REMARK 3 2 5.3980 - 4.2854 1.00 2818 154 0.1473 0.1930 REMARK 3 3 4.2854 - 3.7439 1.00 2836 124 0.1473 0.1732 REMARK 3 4 3.7439 - 3.4017 1.00 2772 140 0.1665 0.2432 REMARK 3 5 3.4017 - 3.1579 1.00 2776 158 0.1805 0.2653 REMARK 3 6 3.1579 - 2.9718 1.00 2761 132 0.1958 0.2658 REMARK 3 7 2.9718 - 2.8230 0.98 2701 147 0.1967 0.2445 REMARK 3 8 2.8230 - 2.7001 0.98 2694 146 0.2170 0.2968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6426 REMARK 3 ANGLE : 0.584 8730 REMARK 3 CHIRALITY : 0.042 966 REMARK 3 PLANARITY : 0.004 1103 REMARK 3 DIHEDRAL : 15.346 3832 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BE CRL LENSES FOR VERTICAL REMARK 200 FOCUSING AND RH/PT/SI COATED REMARK 200 ELLIPITCAL MIRROR FOR HORIZONTAL REMARK 200 FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4C2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 6000, 0.1M SODIUM CITRATE PH REMARK 280 5.6, 0.1M MAGNESIUM CHLORIDE, 0.2M SODIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.12600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.07350 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.12600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.07350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLU A 98 REMARK 465 PHE A 99 REMARK 465 SER A 100 REMARK 465 VAL A 101 REMARK 465 GLY A 102 REMARK 465 GLN A 103 REMARK 465 GLY A 104 REMARK 465 PRO A 105 REMARK 465 ALA A 106 REMARK 465 LYS A 107 REMARK 465 THR A 108 REMARK 465 MET A 109 REMARK 465 GLU A 110 REMARK 465 GLU A 111 REMARK 465 ALA A 112 REMARK 465 SER A 113 REMARK 465 LYS A 114 REMARK 465 ARG A 316 REMARK 465 PRO A 411 REMARK 465 THR A 412 REMARK 465 HIS A 413 REMARK 465 GLY B 95 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLU B 98 REMARK 465 PHE B 99 REMARK 465 SER B 100 REMARK 465 VAL B 101 REMARK 465 GLY B 102 REMARK 465 GLN B 103 REMARK 465 GLY B 104 REMARK 465 PRO B 105 REMARK 465 ALA B 106 REMARK 465 LYS B 107 REMARK 465 THR B 108 REMARK 465 MET B 109 REMARK 465 GLU B 110 REMARK 465 GLU B 111 REMARK 465 ALA B 112 REMARK 465 SER B 113 REMARK 465 LYS B 114 REMARK 465 ARG B 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 ASP A 185 CG OD1 OD2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 LYS A 252 CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 ARG A 304 CD NE CZ NH1 NH2 REMARK 470 HIS A 313 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 318 SD CE REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 ARG A 322 NE CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 MET A 408 CG SD CE REMARK 470 ASN A 409 CG OD1 ND2 REMARK 470 HIS A 410 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 SER B 116 OG REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 ASN B 133 CG OD1 ND2 REMARK 470 GLN B 154 CG CD OE1 NE2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 ASP B 237 CG OD1 OD2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 ASN B 317 CG OD1 ND2 REMARK 470 MET B 318 CG SD CE REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 LYS B 334 CG CD CE NZ REMARK 470 LYS B 417 CG CD CE NZ REMARK 470 LYS D 9 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 335 OD1 ASP B 437 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 186 62.79 63.97 REMARK 500 MET A 187 -35.95 -135.65 REMARK 500 TYR A 236 -109.83 52.90 REMARK 500 ILE A 381 -67.29 -129.84 REMARK 500 ASN A 409 -112.97 -105.06 REMARK 500 PHE A 422 -106.59 -119.53 REMARK 500 MET A 456 -135.77 55.56 REMARK 500 ASP A 471 -80.29 -52.97 REMARK 500 TYR B 180 -157.79 -95.18 REMARK 500 TYR B 236 -123.27 57.44 REMARK 500 ASP B 237 33.41 -99.65 REMARK 500 LEU B 254 30.64 -96.73 REMARK 500 ARG B 258 50.24 39.97 REMARK 500 ASN B 302 76.09 -117.55 REMARK 500 ILE B 381 -66.95 -129.23 REMARK 500 PHE B 422 -103.09 -110.24 REMARK 500 THR B 427 -35.62 -132.07 REMARK 500 MET B 456 -135.60 48.91 REMARK 500 LYS D 7 -169.80 -112.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MYR C 101 and GLY C REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MYR D 101 and GLY D REMARK 800 2 DBREF 5O9S A 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 5O9S B 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 5O9S C 2 9 UNP P62166 NCS1_HUMAN 2 9 DBREF 5O9S D 2 9 UNP P62166 NCS1_HUMAN 2 9 SEQADV 5O9S GLY A 95 UNP P30419 EXPRESSION TAG SEQADV 5O9S GLY A 96 UNP P30419 EXPRESSION TAG SEQADV 5O9S SER A 97 UNP P30419 EXPRESSION TAG SEQADV 5O9S GLU A 98 UNP P30419 EXPRESSION TAG SEQADV 5O9S GLY B 95 UNP P30419 EXPRESSION TAG SEQADV 5O9S GLY B 96 UNP P30419 EXPRESSION TAG SEQADV 5O9S SER B 97 UNP P30419 EXPRESSION TAG SEQADV 5O9S GLU B 98 UNP P30419 EXPRESSION TAG SEQRES 1 A 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 A 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 A 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 A 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 A 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 A 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 A 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 A 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 A 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 A 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 A 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 A 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 A 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 A 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 A 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 A 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 A 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 A 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 A 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 A 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 A 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 A 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 A 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 A 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 A 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 A 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 A 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 A 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 A 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 A 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 A 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 B 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 B 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 B 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 B 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 B 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 B 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 B 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 B 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 B 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 B 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 B 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 B 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 B 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 B 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 B 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 B 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 B 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 B 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 B 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 B 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 B 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 B 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 B 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 B 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 B 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 B 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 B 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 B 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 B 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 B 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 B 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 C 8 GLY LYS SER ASN SER LYS LEU LYS SEQRES 1 D 8 GLY LYS SER ASN SER LYS LEU LYS HET GOL A 501 6 HET CL A 502 1 HET GOL A 503 6 HET GOL B 501 6 HET CL B 502 1 HET CL B 503 1 HET GOL B 504 6 HET MYR C 101 15 HET MYR D 101 15 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM MYR MYRISTIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 6 CL 3(CL 1-) FORMUL 12 MYR 2(C14 H28 O2) FORMUL 14 HOH *174(H2 O) HELIX 1 AA1 PHE A 119 GLN A 123 5 5 HELIX 2 AA2 ASP A 165 TYR A 180 1 16 HELIX 3 AA3 SER A 193 ARG A 202 1 10 HELIX 4 AA4 LEU A 207 GLN A 209 5 3 HELIX 5 AA5 LEU A 254 LYS A 257 5 4 HELIX 6 AA6 ARG A 258 LEU A 273 1 16 HELIX 7 AA7 ASN A 302 VAL A 309 1 8 HELIX 8 AA8 THR A 319 TYR A 327 1 9 HELIX 9 AA9 GLU A 342 LYS A 344 5 3 HELIX 10 AB1 ASP A 345 LYS A 358 1 14 HELIX 11 AB2 SER A 367 TYR A 376 1 10 HELIX 12 AB3 PRO A 430 GLY A 446 1 17 HELIX 13 AB4 GLU A 457 PHE A 461 5 5 HELIX 14 AB5 GLY A 487 VAL A 491 5 5 HELIX 15 AB6 ASP B 165 TYR B 180 1 16 HELIX 16 AB7 SER B 193 ARG B 202 1 10 HELIX 17 AB8 LEU B 207 GLN B 209 5 3 HELIX 18 AB9 ARG B 258 LEU B 273 1 16 HELIX 19 AC1 ASN B 302 VAL B 309 1 8 HELIX 20 AC2 THR B 319 TYR B 327 1 9 HELIX 21 AC3 GLU B 342 LYS B 344 5 3 HELIX 22 AC4 ASP B 345 LYS B 358 1 14 HELIX 23 AC5 SER B 367 TYR B 376 1 10 HELIX 24 AC6 PRO B 430 LYS B 445 1 16 HELIX 25 AC7 GLU B 457 PHE B 461 5 5 HELIX 26 AC8 GLY B 487 VAL B 491 5 5 SHEET 1 AA111 PHE A 156 ALA A 160 0 SHEET 2 AA111 HIS A 211 VAL A 216 -1 O GLY A 213 N ASP A 159 SHEET 3 AA111 LEU A 222 ILE A 235 -1 O GLY A 224 N VAL A 214 SHEET 4 AA111 THR A 238 VAL A 250 -1 O GLU A 244 N ILE A 229 SHEET 5 AA111 GLN A 278 ALA A 283 1 O VAL A 280 N VAL A 243 SHEET 6 AA111 GLY A 468 TYR A 479 -1 O TYR A 479 N ALA A 279 SHEET 7 AA111 GLY A 292 SER A 300 -1 N GLY A 292 O TYR A 476 SHEET 8 AA111 VAL A 449 LEU A 453 -1 O PHE A 450 N ARG A 299 SHEET 9 AA111 ALA A 418 SER A 421 1 N ALA A 419 O ASN A 451 SHEET 10 AA111 VAL A 394 THR A 402 -1 N TYR A 401 O TYR A 420 SHEET 11 AA111 LEU A 362 PRO A 364 0 SHEET 1 AA211 LEU A 338 PRO A 340 0 SHEET 2 AA211 ILE A 382 GLU A 388 -1 O VAL A 386 N ARG A 339 SHEET 3 AA211 VAL A 394 THR A 402 -1 O ASP A 396 N VAL A 387 SHEET 4 AA211 ALA A 418 SER A 421 -1 O TYR A 420 N TYR A 401 SHEET 5 AA211 VAL A 449 LEU A 453 1 O ASN A 451 N ALA A 419 SHEET 6 AA211 GLY A 292 SER A 300 -1 N ARG A 299 O PHE A 450 SHEET 7 AA211 GLY A 468 TYR A 479 -1 O TYR A 476 N GLY A 292 SHEET 8 AA211 GLN A 278 ALA A 283 -1 N ALA A 279 O TYR A 479 SHEET 9 AA211 THR A 238 VAL A 250 1 N VAL A 243 O VAL A 280 SHEET 10 AA211 LEU A 222 ILE A 235 -1 N ILE A 229 O GLU A 244 SHEET 11 AA211 VAL A 425 HIS A 426 0 SHEET 1 AA3 3 PHE A 188 PHE A 190 0 SHEET 2 AA3 3 SER A 405 ILE A 407 -1 O THR A 406 N ARG A 189 SHEET 3 AA3 3 SER A 415 LEU A 416 -1 O LEU A 416 N SER A 405 SHEET 1 AA412 PHE B 156 ALA B 160 0 SHEET 2 AA412 HIS B 211 VAL B 216 -1 O GLY B 213 N ASP B 159 SHEET 3 AA412 LEU B 222 ILE B 235 -1 O VAL B 223 N VAL B 214 SHEET 4 AA412 THR B 238 VAL B 250 -1 O MET B 242 N ALA B 231 SHEET 5 AA412 ALA B 279 ALA B 283 1 O VAL B 280 N VAL B 243 SHEET 6 AA412 GLY B 468 TYR B 479 -1 O TYR B 479 N ALA B 279 SHEET 7 AA412 GLY B 292 SER B 300 -1 N HIS B 298 O GLY B 468 SHEET 8 AA412 VAL B 449 LEU B 453 -1 O ALA B 452 N TRP B 297 SHEET 9 AA412 ALA B 418 SER B 421 1 N ALA B 419 O ASN B 451 SHEET 10 AA412 VAL B 394 THR B 402 -1 N TYR B 401 O TYR B 420 SHEET 11 AA412 ILE B 382 GLU B 388 -1 N VAL B 387 O ASP B 396 SHEET 12 AA412 LEU B 338 PRO B 340 -1 N ARG B 339 O VAL B 386 SHEET 1 AA5 4 PHE B 156 ALA B 160 0 SHEET 2 AA5 4 HIS B 211 VAL B 216 -1 O GLY B 213 N ASP B 159 SHEET 3 AA5 4 LEU B 222 ILE B 235 -1 O VAL B 223 N VAL B 214 SHEET 4 AA5 4 LEU B 362 PRO B 364 -1 O THR B 363 N HIS B 234 SHEET 1 AA6 3 PHE B 188 PHE B 190 0 SHEET 2 AA6 3 SER B 405 ILE B 407 -1 O THR B 406 N ARG B 189 SHEET 3 AA6 3 SER B 415 LEU B 416 -1 O LEU B 416 N SER B 405 LINK N GLY C 2 C1 MYR C 101 1555 1555 1.34 LINK N GLY D 2 C1 MYR D 101 1555 1555 1.34 CISPEP 1 PRO A 288 LYS A 289 0 -6.78 CISPEP 2 PRO B 288 LYS B 289 0 -3.38 SITE 1 AC1 6 LYS A 289 VAL A 291 TYR A 477 LEU A 478 SITE 2 AC1 6 TRP A 481 CYS A 483 SITE 1 AC2 4 VAL A 132 LYS A 289 PRO A 484 SER A 485 SITE 1 AC3 7 GLU A 244 PRO A 364 MET A 366 TRP A 374 SITE 2 AC3 7 TYR A 423 VAL A 494 GLN A 496 SITE 1 AC4 7 LYS B 289 PRO B 290 VAL B 291 LEU B 478 SITE 2 AC4 7 TRP B 481 LYS B 482 CYS B 483 SITE 1 AC5 4 VAL B 131 VAL B 132 LYS B 289 SER B 485 SITE 1 AC6 5 LEU B 161 LEU B 163 ARG B 202 TRP B 206 SITE 2 AC6 5 HIS B 211 SITE 1 AC7 8 GLU B 244 PRO B 364 MET B 366 TRP B 374 SITE 2 AC7 8 TYR B 423 LEU B 493 VAL B 494 GLN B 496 SITE 1 AC8 12 TRP A 120 TYR A 180 ASN A 246 PHE A 247 SITE 2 AC8 12 LEU A 248 THR A 268 GLN A 278 ALA A 279 SITE 3 AC8 12 TYR A 281 THR A 282 ALA A 283 LYS C 3 SITE 1 AC9 13 TYR B 180 ILE B 245 PHE B 247 LEU B 248 SITE 2 AC9 13 THR B 268 PHE B 277 GLN B 278 ALA B 279 SITE 3 AC9 13 TYR B 281 THR B 282 ALA B 283 TYR B 479 SITE 4 AC9 13 LYS D 3 CRYST1 58.022 80.252 178.147 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005613 0.00000