PDB Short entry for 5O9V HEADER TRANSFERASE 20-JUN-17 5O9V TITLE HSNMT1 IN COMPLEX WITH COA AND MYRISTOYLATED-GGCFSKPK OCTAPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE 1,TYPE I N- COMPND 5 MYRISTOYLTRANSFERASE,PEPTIDE N-MYRISTOYLTRANSFERASE 1; COMPND 6 EC: 2.3.1.97; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: APOPTOSIS-INDUCING FACTOR 3; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: UNP RESIDUES 2-9; COMPND 12 SYNONYM: APOPTOSIS-INDUCING FACTOR-LIKE PROTEIN; COMPND 13 EC: 1.-.-.-; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: SYNTHETIC OCTAPEPTIDE GGCFSKPK MODIFIED BY NMT1 TO COMPND 16 (MYR)GGCFSKPK. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NMT1, NMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 DERIVATIVE; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSFERASE, GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1 N- KEYWDS 2 MYRISTOYLTRANSFERASE 1, N-MYRISTOYLTRANSFERASE TYPE1, NMT1, NMT, KEYWDS 3 ACYLTRANSFERASE, MYR-PEPTIDE, COA, MYR-COA, MYRISTOYL, GNAT EXPDTA X-RAY DIFFRACTION AUTHOR C.DIAN,T.MEINNEL,C.GIGLIONE REVDAT 3 17-JAN-24 5O9V 1 REMARK REVDAT 2 07-NOV-18 5O9V 1 JRNL REVDAT 1 27-JUN-18 5O9V 0 JRNL AUTH B.CASTREC,C.DIAN,S.CICCONE,C.L.EBERT,W.V.BIENVENUT, JRNL AUTH 2 J.P.LE CAER,J.M.STEYAERT,C.GIGLIONE,T.MEINNEL JRNL TITL STRUCTURAL AND GENOMIC DECODING OF HUMAN AND PLANT JRNL TITL 2 MYRISTOYLOMES REVEALS A DEFINITIVE RECOGNITION PATTERN. JRNL REF NAT. CHEM. BIOL. V. 14 671 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29892081 JRNL DOI 10.1038/S41589-018-0077-5 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 42356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7014 - 5.4262 1.00 2893 154 0.1671 0.1597 REMARK 3 2 5.4262 - 4.3077 1.00 2773 142 0.1293 0.1435 REMARK 3 3 4.3077 - 3.7635 1.00 2708 148 0.1320 0.1543 REMARK 3 4 3.7635 - 3.4195 1.00 2713 124 0.1442 0.2072 REMARK 3 5 3.4195 - 3.1744 1.00 2705 140 0.1586 0.1805 REMARK 3 6 3.1744 - 2.9873 1.00 2706 127 0.1757 0.2090 REMARK 3 7 2.9873 - 2.8377 1.00 2663 148 0.1788 0.2332 REMARK 3 8 2.8377 - 2.7142 1.00 2684 129 0.1866 0.2828 REMARK 3 9 2.7142 - 2.6097 1.00 2633 157 0.1803 0.2454 REMARK 3 10 2.6097 - 2.5196 1.00 2639 166 0.1937 0.2541 REMARK 3 11 2.5196 - 2.4409 1.00 2679 129 0.1928 0.2635 REMARK 3 12 2.4409 - 2.3711 1.00 2653 149 0.1914 0.2738 REMARK 3 13 2.3711 - 2.3087 1.00 2616 151 0.1934 0.2449 REMARK 3 14 2.3087 - 2.2524 1.00 2675 121 0.2033 0.2512 REMARK 3 15 2.2524 - 2.2011 0.95 2475 156 0.2047 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6861 REMARK 3 ANGLE : 0.675 9330 REMARK 3 CHIRALITY : 0.044 1003 REMARK 3 PLANARITY : 0.006 1178 REMARK 3 DIHEDRAL : 15.373 4076 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96112 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4C2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG8000, 0.1M SODIUM CITRATE REMARK 280 PH5.6, 0.1 M MAGNESIUM CHLORIDE, 0.1M SODIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.12750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.12750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLU A 98 REMARK 465 PHE A 99 REMARK 465 SER A 100 REMARK 465 VAL A 101 REMARK 465 GLY A 102 REMARK 465 GLN A 103 REMARK 465 GLY B 95 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLU B 98 REMARK 465 PHE B 99 REMARK 465 SER B 100 REMARK 465 VAL B 101 REMARK 465 GLY B 102 REMARK 465 GLN B 103 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ASN A 133 CG OD1 ND2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 316 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 317 CG OD1 ND2 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ARG B 316 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 LYS B 334 CG CD CE NZ REMARK 470 THR B 412 OG1 CG2 REMARK 470 HIS B 413 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 414 CG CD CE NZ REMARK 470 LYS C 9 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 411 C - N - CD ANGL. DEV. = -20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 180 -155.37 -90.48 REMARK 500 TYR A 236 -111.52 50.96 REMARK 500 ASN A 302 74.68 -117.45 REMARK 500 ASN A 302 72.08 -117.29 REMARK 500 ILE A 381 -66.38 -129.23 REMARK 500 PHE A 422 -101.75 -106.87 REMARK 500 MET A 456 -136.23 49.19 REMARK 500 TYR B 180 -158.21 -89.72 REMARK 500 HIS B 211 78.06 -103.77 REMARK 500 TYR B 236 -113.11 51.61 REMARK 500 LEU B 314 107.26 -51.28 REMARK 500 ILE B 381 -66.83 -133.95 REMARK 500 HIS B 410 -163.56 -126.77 REMARK 500 PRO B 411 21.64 -158.57 REMARK 500 PHE B 422 -99.07 -107.76 REMARK 500 MET B 456 -133.52 49.87 REMARK 500 LYS B 466 32.53 73.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 410 PRO B 411 119.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MYR C 101 and GLY C REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MYR D 101 and GLY D REMARK 800 2 DBREF 5O9V A 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 5O9V B 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 5O9V C 2 9 UNP Q96NN9 AIFM3_HUMAN 2 9 DBREF 5O9V D 2 9 UNP Q96NN9 AIFM3_HUMAN 2 9 SEQADV 5O9V GLY A 95 UNP P30419 EXPRESSION TAG SEQADV 5O9V GLY A 96 UNP P30419 EXPRESSION TAG SEQADV 5O9V SER A 97 UNP P30419 EXPRESSION TAG SEQADV 5O9V GLU A 98 UNP P30419 EXPRESSION TAG SEQADV 5O9V GLY B 95 UNP P30419 EXPRESSION TAG SEQADV 5O9V GLY B 96 UNP P30419 EXPRESSION TAG SEQADV 5O9V SER B 97 UNP P30419 EXPRESSION TAG SEQADV 5O9V GLU B 98 UNP P30419 EXPRESSION TAG SEQRES 1 A 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 A 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 A 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 A 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 A 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 A 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 A 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 A 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 A 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 A 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 A 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 A 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 A 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 A 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 A 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 A 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 A 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 A 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 A 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 A 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 A 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 A 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 A 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 A 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 A 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 A 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 A 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 A 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 A 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 A 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 A 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 B 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 B 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 B 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 B 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 B 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 B 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 B 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 B 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 B 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 B 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 B 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 B 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 B 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 B 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 B 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 B 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 B 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 B 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 B 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 B 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 B 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 B 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 B 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 B 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 B 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 B 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 B 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 B 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 B 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 B 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 B 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 C 8 GLY GLY CYS PHE SER LYS PRO LYS SEQRES 1 D 8 GLY GLY CYS PHE SER LYS PRO LYS HET COA A 501 48 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET CL A 505 1 HET COA B 501 48 HET GOL B 502 6 HET GOL B 503 6 HET CL B 504 1 HET MYR C 101 15 HET MYR D 101 15 HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM MYR MYRISTIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 COA 2(C21 H36 N7 O16 P3 S) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 9 CL 2(CL 1-) FORMUL 14 MYR 2(C14 H28 O2) FORMUL 16 HOH *494(H2 O) HELIX 1 AA1 THR A 108 SER A 113 1 6 HELIX 2 AA2 PHE A 119 GLN A 123 5 5 HELIX 3 AA3 ASP A 165 TYR A 180 1 16 HELIX 4 AA4 SER A 193 ARG A 202 1 10 HELIX 5 AA5 LEU A 207 GLN A 209 5 3 HELIX 6 AA6 LYS A 252 ARG A 255 5 4 HELIX 7 AA7 ARG A 258 GLU A 274 1 17 HELIX 8 AA8 ASN A 302 VAL A 309 1 8 HELIX 9 AA9 THR A 319 ARG A 328 1 10 HELIX 10 AB1 GLU A 342 LYS A 344 5 3 HELIX 11 AB2 ASP A 345 LYS A 358 1 14 HELIX 12 AB3 SER A 367 TYR A 376 1 10 HELIX 13 AB4 PRO A 430 LYS A 445 1 16 HELIX 14 AB5 ASN A 458 GLU A 463 1 6 HELIX 15 AB6 GLY A 487 VAL A 491 5 5 HELIX 16 AB7 THR B 108 ARG B 115 1 8 HELIX 17 AB8 PHE B 119 GLN B 123 5 5 HELIX 18 AB9 ASP B 165 TYR B 180 1 16 HELIX 19 AC1 SER B 193 ARG B 202 1 10 HELIX 20 AC2 LEU B 207 GLN B 209 5 3 HELIX 21 AC3 LYS B 252 ARG B 255 5 4 HELIX 22 AC4 ARG B 258 GLU B 274 1 17 HELIX 23 AC5 ASN B 302 VAL B 309 1 8 HELIX 24 AC6 THR B 319 ARG B 328 1 10 HELIX 25 AC7 GLU B 342 LYS B 344 5 3 HELIX 26 AC8 ASP B 345 LYS B 358 1 14 HELIX 27 AC9 SER B 367 TYR B 376 1 10 HELIX 28 AD1 PRO B 430 LYS B 445 1 16 HELIX 29 AD2 GLU B 457 PHE B 461 5 5 HELIX 30 AD3 GLY B 487 VAL B 491 5 5 SHEET 1 A 4 PHE A 156 ALA A 160 0 SHEET 2 A 4 HIS A 211 VAL A 216 -1 SHEET 3 A 4 LEU A 222 ILE A 235 -1 SHEET 4 A 4 THR A 238 ASN A 246 -1 SHEET 1 B 2 PHE A 188 PHE A 190 0 SHEET 2 B 2 SER A 405 ILE A 407 -1 SHEET 1 C 2 ILE A 233 ILE A 235 0 SHEET 2 C 2 LEU A 362 PRO A 364 -1 SHEET 1 D 3 ALA A 279 ALA A 283 0 SHEET 2 D 3 ASN A 473 TYR A 479 -1 SHEET 3 D 3 PRO A 290 ARG A 295 -1 SHEET 1 E 6 TYR A 296 SER A 300 0 SHEET 2 E 6 VAL A 449 LEU A 453 -1 SHEET 3 E 6 ALA A 418 SER A 421 1 SHEET 4 E 6 VAL A 394 THR A 402 -1 SHEET 5 E 6 ILE A 382 GLU A 388 -1 SHEET 6 E 6 LEU A 338 PRO A 340 -1 SHEET 1 F 7 PHE B 156 ALA B 160 0 SHEET 2 F 7 HIS B 211 VAL B 216 -1 SHEET 3 F 7 LEU B 222 ILE B 235 -1 SHEET 4 F 7 THR B 238 ASN B 246 -1 SHEET 5 F 7 ALA B 279 ALA B 283 1 SHEET 6 F 7 ASN B 473 TYR B 479 -1 SHEET 7 F 7 GLY B 292 ARG B 295 -1 SHEET 1 G 5 PHE B 188 PHE B 190 0 SHEET 2 G 5 PHE B 400 ILE B 407 -1 SHEET 3 G 5 LEU B 416 SER B 421 -1 SHEET 4 G 5 VAL B 449 LEU B 453 1 SHEET 5 G 5 TYR B 296 SER B 300 -1 SHEET 1 H 2 ASN B 232 ILE B 235 0 SHEET 2 H 2 LEU B 362 VAL B 365 -1 SHEET 1 I 3 LEU B 338 PRO B 340 0 SHEET 2 I 3 ILE B 382 GLU B 388 -1 SHEET 3 I 3 VAL B 394 TYR B 401 -1 LINK N GLY C 2 C1 MYR C 101 1555 1555 1.34 LINK N GLY D 2 C1 MYR D 101 1555 1555 1.33 CISPEP 1 PRO A 288 LYS A 289 0 -4.78 CISPEP 2 PRO B 288 LYS B 289 0 -9.24 CISPEP 3 ARG B 316 ASN B 317 0 -5.63 SITE 1 AC1 25 ARG A 115 TYR A 117 GLN A 118 PHE A 119 SITE 2 AC1 25 TRP A 120 ASN A 179 TYR A 180 VAL A 181 SITE 3 AC1 25 LEU A 248 CYS A 249 VAL A 250 ARG A 255 SITE 4 AC1 25 SER A 256 LYS A 257 ARG A 258 VAL A 259 SITE 5 AC1 25 ALA A 260 PRO A 261 THR A 282 ALA A 283 SITE 6 AC1 25 LEU A 287 HOH A 659 HOH A 672 HOH A 707 SITE 7 AC1 25 GLY C 2 SITE 1 AC2 9 PHE A 190 TYR A 192 TYR A 296 TYR A 401 SITE 2 AC2 9 LEU A 403 TYR A 420 GLN A 496 GLY C 3 SITE 3 AC2 9 CYS C 4 SITE 1 AC3 9 PRO A 126 LYS A 289 PRO A 290 VAL A 291 SITE 2 AC3 9 LEU A 478 TRP A 481 LYS A 482 CYS A 483 SITE 3 AC3 9 HOH A 644 SITE 1 AC4 5 LYS A 305 THR A 412 HIS A 413 LYS A 414 SITE 2 AC4 5 SER A 415 SITE 1 AC5 5 LEU A 161 LEU A 163 ARG A 202 TRP A 206 SITE 2 AC5 5 HIS A 211 SITE 1 AC6 28 ARG B 115 TYR B 117 GLN B 118 PHE B 119 SITE 2 AC6 28 TRP B 120 ASN B 179 TYR B 180 VAL B 181 SITE 3 AC6 28 LEU B 248 CYS B 249 VAL B 250 ARG B 255 SITE 4 AC6 28 SER B 256 LYS B 257 ARG B 258 VAL B 259 SITE 5 AC6 28 ALA B 260 PRO B 261 THR B 282 ALA B 283 SITE 6 AC6 28 LEU B 287 HOH B 654 HOH B 690 HOH B 726 SITE 7 AC6 28 HOH B 762 GLY D 2 GLY D 3 MYR D 101 SITE 1 AC7 8 PHE B 190 TYR B 296 TYR B 401 LEU B 403 SITE 2 AC7 8 LEU B 495 GLN B 496 GLY D 3 CYS D 4 SITE 1 AC8 7 LYS B 289 VAL B 291 LEU B 478 TRP B 481 SITE 2 AC8 7 LYS B 482 CYS B 483 HOH B 603 SITE 1 AC9 4 LEU B 163 ARG B 202 TRP B 206 HIS B 211 SITE 1 AD1 15 TRP A 120 TYR A 180 ILE A 245 ASN A 246 SITE 2 AD1 15 PHE A 247 LEU A 248 THR A 268 HIS A 272 SITE 3 AD1 15 TYR A 281 THR A 282 ALA A 283 TYR A 479 SITE 4 AD1 15 COA A 501 HOH A 670 GLY C 3 SITE 1 AD2 15 TRP B 120 TYR B 180 ILE B 245 ASN B 246 SITE 2 AD2 15 PHE B 247 LEU B 248 ILE B 264 THR B 268 SITE 3 AD2 15 PHE B 277 TYR B 281 THR B 282 TYR B 479 SITE 4 AD2 15 COA B 501 HOH B 656 GLY D 3 CRYST1 58.130 79.010 178.255 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017203 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005610 0.00000