PDB Short entry for 5OB5 HEADER IMMUNE SYSTEM 26-JUN-17 5OB5 TITLE FAB COMPLEX WITH GROBETA. ABVANCE: INCREASING OUR KNOWLEDGE OF TITLE 2 ANTIBODY STRUCTURAL SPACE TO ENABLE FASTER AND BETTER DECISION-MAKING TITLE 3 IN ANTIBODY DRUG DISCOVERY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-X-C MOTIF CHEMOKINE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GROWTH-REGULATED PROTEIN BETA,GRO-BETA,MACROPHAGE COMPND 5 INFLAMMATORY PROTEIN 2-ALPHA,MIP2-ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FAB HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FAB LIGHT CHAIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CXCL2, GRO2, GROB, MIP2A, SCYB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS FAB COMPLEX, ABVANCE PROJECT, PISTOIA ALLIANCE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,P.WARD,M.A.CONVERY REVDAT 1 08-NOV-17 5OB5 0 JRNL AUTH M.A.CONVERY JRNL TITL ABVANCE: INCREASING OUR KNOWLEDGE OF ANTIBODY STRUCTURAL JRNL TITL 2 SPACE TO ENABLE FASTER AND BETTER DECISION-MAKING IN JRNL TITL 3 ANTIBODY DRUG DISCOVERY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 70836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.920 REMARK 3 FREE R VALUE TEST SET COUNT : 4194 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5162 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3160 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4862 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.81 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 300 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 754 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62790 REMARK 3 B22 (A**2) : -2.23800 REMARK 3 B33 (A**2) : 1.61010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.30150 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.180 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.092 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.088 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.083 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.083 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4033 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5504 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1360 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 83 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 593 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4033 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 533 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5319 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.22 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.3760 34.7346 -24.4003 REMARK 3 T TENSOR REMARK 3 T11: -0.0986 T22: 0.1159 REMARK 3 T33: -0.1062 T12: -0.0730 REMARK 3 T13: 0.0087 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 4.4127 L22: 0.5906 REMARK 3 L33: 1.8421 L12: 0.8260 REMARK 3 L13: 0.2655 L23: -1.3665 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: -0.0595 S13: 0.3000 REMARK 3 S21: 0.2066 S22: -0.2366 S23: 0.0484 REMARK 3 S31: -0.2102 S32: 0.5347 S33: 0.1062 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): -31.2650 26.6582 -15.6675 REMARK 3 T TENSOR REMARK 3 T11: 0.0010 T22: -0.0461 REMARK 3 T33: -0.0130 T12: -0.0070 REMARK 3 T13: -0.0093 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4127 L22: 0.2573 REMARK 3 L33: 0.6685 L12: -0.1313 REMARK 3 L13: -0.3195 L23: 0.1484 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0439 S13: 0.0006 REMARK 3 S21: -0.0203 S22: -0.0317 S23: 0.0216 REMARK 3 S31: -0.0137 S32: -0.0134 S33: 0.0314 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): -27.7376 24.1104 1.7304 REMARK 3 T TENSOR REMARK 3 T11: -0.0251 T22: -0.0389 REMARK 3 T33: -0.0395 T12: -0.0050 REMARK 3 T13: -0.0034 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.8915 L22: 0.2818 REMARK 3 L33: 0.4353 L12: -0.0865 REMARK 3 L13: -0.1229 L23: 0.0976 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.1196 S13: -0.0147 REMARK 3 S21: 0.0335 S22: -0.0096 S23: 0.0451 REMARK 3 S31: 0.0564 S32: 0.0132 S33: 0.0054 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1200005319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.5M LITHIUM REMARK 280 CHLORIDE. 5-30% GLYCEROL ADDED AS CRYOPROTECTANT, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.59500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.59500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 689 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 220 CG CD CE NZ REMARK 470 GLU L 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 150 61.92 61.11 REMARK 500 ALA L 51 -36.87 68.58 REMARK 500 ALA L 84 176.77 177.96 REMARK 500 HIS L 91 45.72 -143.18 REMARK 500 SER L 171 18.87 59.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 779 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH H 780 DISTANCE = 6.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 DBREF 5OB5 A 6 68 UNP P19875 CXCL2_HUMAN 40 102 DBREF 5OB5 H 1 220 PDB 5OB5 5OB5 1 220 DBREF 5OB5 L 1 213 PDB 5OB5 5OB5 1 213 SEQRES 1 A 63 GLU LEU ARG CYS GLN CYS LEU GLN THR LEU GLN GLY ILE SEQRES 2 A 63 HIS LEU LYS ASN ILE GLN SER VAL LYS VAL LYS SER PRO SEQRES 3 A 63 GLY PRO HIS CYS ALA GLN THR GLU VAL ILE ALA THR LEU SEQRES 4 A 63 LYS ASN GLY GLN LYS ALA CYS LEU ASN PRO ALA SER PRO SEQRES 5 A 63 MET VAL LYS LYS ILE ILE GLU LYS MET LEU LYS SEQRES 1 H 220 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 220 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 220 TYR THR PHE THR ASN TYR TRP ILE VAL TRP VAL ARG GLN SEQRES 4 H 220 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ASP LEU TYR SEQRES 5 H 220 SER GLY GLY GLY TYR THR PHE TYR SER GLU ASN PHE LYS SEQRES 6 H 220 GLY ARG VAL THR MET THR ARG ASP THR SER THR SER THR SEQRES 7 H 220 VAL TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 220 ALA VAL TYR TYR CYS ALA ARG SER GLY TYR ASP ARG THR SEQRES 9 H 220 TRP PHE ALA HIS TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 220 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 220 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 220 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 220 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 220 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 220 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 220 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 220 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 1 L 213 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 213 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 L 213 GLN ASP ILE GLU SER TYR LEU SER TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR TYR ALA THR SEQRES 5 L 213 ARG LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY GLN ASP TYR THR LEU THR ILE SER SER LEU SEQRES 7 L 213 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS LEU GLN HIS SEQRES 8 L 213 GLY GLU SER PRO PRO THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 L 213 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 213 PHE ASN ARG GLY GLU HET GOL A 101 6 HET GOL H 301 12 HET SO4 H 302 5 HET SO4 H 303 5 HET SO4 H 304 5 HET GOL L 301 6 HET GOL L 302 6 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 4(C3 H8 O3) FORMUL 6 SO4 3(O4 S 2-) FORMUL 11 HOH *754(H2 O) HELIX 1 AA1 HIS A 19 LYS A 21 5 3 HELIX 2 AA2 SER A 56 LYS A 68 1 13 HELIX 3 AA3 THR H 28 ASN H 31 5 4 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 162 ALA H 164 5 3 HELIX 6 AA6 SER H 193 LEU H 195 5 3 HELIX 7 AA7 LYS H 207 ASN H 210 5 4 HELIX 8 AA8 GLN L 79 PHE L 83 5 5 HELIX 9 AA9 SER L 121 SER L 127 1 7 HELIX 10 AB1 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 3 ILE A 23 LYS A 29 0 SHEET 2 AA1 3 GLU A 39 LEU A 44 -1 O GLU A 39 N LYS A 29 SHEET 3 AA1 3 LYS A 49 LEU A 52 -1 O ALA A 50 N ALA A 42 SHEET 1 AA2 4 GLN H 3 GLN H 6 0 SHEET 2 AA2 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA2 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA2 4 VAL H 68 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA3 6 GLU H 10 LYS H 12 0 SHEET 2 AA3 6 THR H 113 VAL H 117 1 O THR H 116 N LYS H 12 SHEET 3 AA3 6 ALA H 92 SER H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 AA3 6 TRP H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA3 6 LEU H 45 TYR H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA3 6 THR H 58 TYR H 60 -1 O PHE H 59 N ASP H 50 SHEET 1 AA4 4 GLU H 10 LYS H 12 0 SHEET 2 AA4 4 THR H 113 VAL H 117 1 O THR H 116 N LYS H 12 SHEET 3 AA4 4 ALA H 92 SER H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 AA4 4 PHE H 106 TRP H 109 -1 O HIS H 108 N ARG H 98 SHEET 1 AA5 4 SER H 126 LEU H 130 0 SHEET 2 AA5 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 AA5 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 AA5 4 VAL H 169 THR H 171 -1 N HIS H 170 O VAL H 187 SHEET 1 AA6 4 THR H 137 SER H 138 0 SHEET 2 AA6 4 THR H 141 TYR H 151 -1 O THR H 141 N SER H 138 SHEET 3 AA6 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 AA6 4 VAL H 175 LEU H 176 -1 N VAL H 175 O SER H 183 SHEET 1 AA7 3 THR H 157 TRP H 160 0 SHEET 2 AA7 3 ILE H 201 HIS H 206 -1 O ASN H 203 N SER H 159 SHEET 3 AA7 3 THR H 211 LYS H 216 -1 O VAL H 213 N VAL H 204 SHEET 1 AA8 4 MET L 4 SER L 7 0 SHEET 2 AA8 4 VAL L 19 ALA L 25 -1 O GLN L 24 N THR L 5 SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA8 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA9 6 SER L 10 SER L 14 0 SHEET 2 AA9 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA9 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA9 6 ARG L 53 LEU L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 AB1 4 SER L 10 SER L 14 0 SHEET 2 AB1 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AB1 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AB1 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB3 4 ALA L 153 LEU L 154 0 SHEET 2 AB3 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB3 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS A 9 CYS A 35 1555 1555 2.05 SSBOND 2 CYS A 11 CYS A 51 1555 1555 2.08 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 4 CYS H 146 CYS H 202 1555 1555 2.04 SSBOND 5 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 6 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 152 PRO H 153 0 -3.35 CISPEP 2 GLU H 154 PRO H 155 0 -1.95 CISPEP 3 SER L 7 PRO L 8 0 -5.29 CISPEP 4 SER L 7 PRO L 8 0 -5.94 CISPEP 5 SER L 94 PRO L 95 0 -0.83 CISPEP 6 TYR L 140 PRO L 141 0 1.17 SITE 1 AC1 7 GLU A 6 LEU A 7 ARG A 8 HOH A 217 SITE 2 AC1 7 ARG H 103 HIS L 91 GLY L 92 SITE 1 AC2 13 PHE H 172 PRO H 173 ALA H 174 VAL H 175 SITE 2 AC2 13 SER H 183 LEU H 184 SER H 185 HOH H 401 SITE 3 AC2 13 HOH H 404 GLN L 160 SER L 162 SER L 176 SITE 4 AC2 13 THR L 178 SITE 1 AC3 8 GLY H 56 TYR H 57 THR H 58 ARG H 72 SITE 2 AC3 8 HOH H 453 HOH H 456 HOH H 547 HOH H 593 SITE 1 AC4 7 HIS H 108 TRP H 109 HOH H 407 HOH H 485 SITE 2 AC4 7 HOH H 538 HOH H 601 HOH L 448 SITE 1 AC5 6 VAL H 2 ARG H 98 HIS H 108 HOH H 418 SITE 2 AC5 6 HOH H 426 HOH H 477 SITE 1 AC6 10 HIS H 170 HOH H 439 HOH H 598 THR L 164 SITE 2 AC6 10 GLU L 165 ASP L 167 SER L 168 HOH L 452 SITE 3 AC6 10 HOH L 482 HOH L 586 SITE 1 AC7 5 SER L 121 ASP L 122 GLU L 123 HOH L 471 SITE 2 AC7 5 HOH L 477 CRYST1 155.190 60.210 68.250 90.00 110.44 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006444 0.000000 0.002402 0.00000 SCALE2 0.000000 0.016609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015637 0.00000