PDB Short entry for 5OEC HEADER HYDROLASE 07-JUL-17 5OEC TITLE HUMAN RAB32 (18-201):GDP IN COMPLEX WITH SALMONELLA GTGE (21-214) C45A TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTGE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VIRULENCE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAS-RELATED PROTEIN RAB-32; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA CHOLERAESUIS; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 GENE: GTGE, IN36_21720, IN69_16745, IN77_18825; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: RAB32; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAB GTPASE, POSTTRANSLATIONAL MODIFICATION, PROTEOLYSIS, SALMONELLA KEYWDS 2 INFECTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WACHTEL,B.BRAEUNING,S.L.MADER,F.ECKER,V.R.I.KAILA,M.GROLL,A.ITZEN REVDAT 3 17-JAN-24 5OEC 1 LINK REVDAT 2 17-JAN-18 5OEC 1 JRNL REVDAT 1 10-JAN-18 5OEC 0 JRNL AUTH R.WACHTEL,B.BRAUNING,S.L.MADER,F.ECKER,V.R.I.KAILA,M.GROLL, JRNL AUTH 2 A.ITZEN JRNL TITL THE PROTEASE GTGE FROM SALMONELLA EXCLUSIVELY TARGETS JRNL TITL 2 INACTIVE RAB GTPASES. JRNL REF NAT COMMUN V. 9 44 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29298974 JRNL DOI 10.1038/S41467-017-02110-1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 16068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9538 - 6.1837 0.97 1277 137 0.1861 0.1951 REMARK 3 2 6.1837 - 4.9673 0.97 1286 140 0.1926 0.2208 REMARK 3 3 4.9673 - 4.3571 0.98 1287 140 0.1567 0.1624 REMARK 3 4 4.3571 - 3.9669 0.99 1303 146 0.1621 0.2131 REMARK 3 5 3.9669 - 3.6872 0.95 1256 135 0.1834 0.2180 REMARK 3 6 3.6872 - 3.4726 0.98 1307 147 0.1962 0.2258 REMARK 3 7 3.4726 - 3.3007 0.99 1294 145 0.2159 0.2784 REMARK 3 8 3.3007 - 3.1584 0.99 1281 138 0.2195 0.2460 REMARK 3 9 3.1584 - 3.0379 0.99 1334 145 0.2286 0.2599 REMARK 3 10 3.0379 - 2.9338 0.99 1298 147 0.2372 0.2878 REMARK 3 11 2.9338 - 2.8428 0.94 1240 139 0.2328 0.2884 REMARK 3 12 2.8428 - 2.7620 0.97 1272 141 0.2324 0.3053 REMARK 3 13 2.7620 - 2.6897 0.99 1303 149 0.2328 0.2663 REMARK 3 14 2.6897 - 2.6245 0.98 1324 143 0.2413 0.3278 REMARK 3 15 2.6245 - 2.5651 0.99 1284 142 0.2396 0.2760 REMARK 3 16 2.5651 - 2.5108 0.98 1270 136 0.2597 0.3320 REMARK 3 17 2.5108 - 2.4608 0.98 1331 149 0.2609 0.3144 REMARK 3 18 2.4608 - 2.4145 0.99 1254 146 0.2662 0.3547 REMARK 3 19 2.4145 - 2.3716 0.98 1306 144 0.2816 0.3186 REMARK 3 20 2.3716 - 2.3315 0.92 1216 135 0.3041 0.3767 REMARK 3 21 2.3315 - 2.2941 0.84 1096 116 0.3082 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2932 REMARK 3 ANGLE : 0.435 3970 REMARK 3 CHIRALITY : 0.038 436 REMARK 3 PLANARITY : 0.003 506 REMARK 3 DIHEDRAL : 16.128 1732 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3075 26.0165 120.2132 REMARK 3 T TENSOR REMARK 3 T11: 0.5615 T22: 0.3818 REMARK 3 T33: 0.2071 T12: -0.0979 REMARK 3 T13: -0.0160 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.0770 L22: 1.4288 REMARK 3 L33: 1.9050 L12: 0.3811 REMARK 3 L13: 0.4038 L23: 0.8723 REMARK 3 S TENSOR REMARK 3 S11: -0.1795 S12: 0.5761 S13: 0.0194 REMARK 3 S21: -0.5279 S22: 0.3066 S23: -0.0557 REMARK 3 S31: -0.1921 S32: 0.4488 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5408 31.3498 112.2962 REMARK 3 T TENSOR REMARK 3 T11: 1.2584 T22: 0.7486 REMARK 3 T33: 0.3630 T12: -0.2010 REMARK 3 T13: -0.1126 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.1220 L22: 1.2306 REMARK 3 L33: 3.0012 L12: 0.8986 REMARK 3 L13: 1.7496 L23: 0.4880 REMARK 3 S TENSOR REMARK 3 S11: -0.1752 S12: 0.2804 S13: 0.2303 REMARK 3 S21: -0.6400 S22: 0.2136 S23: 0.0057 REMARK 3 S31: -0.9634 S32: 0.0609 S33: 0.3285 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5364 37.0797 128.7598 REMARK 3 T TENSOR REMARK 3 T11: 0.6703 T22: 0.3463 REMARK 3 T33: 0.4588 T12: 0.0858 REMARK 3 T13: -0.1362 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 5.7671 L22: 2.6883 REMARK 3 L33: 2.0358 L12: 1.4575 REMARK 3 L13: -1.1616 L23: 1.1316 REMARK 3 S TENSOR REMARK 3 S11: -0.2804 S12: 0.3119 S13: 0.8688 REMARK 3 S21: -0.2230 S22: 0.1163 S23: 0.5692 REMARK 3 S31: -1.0053 S32: -0.3151 S33: 0.2855 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2809 14.6506 124.1702 REMARK 3 T TENSOR REMARK 3 T11: 0.3700 T22: 0.3344 REMARK 3 T33: 0.3740 T12: -0.0089 REMARK 3 T13: -0.1263 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.3896 L22: 2.9252 REMARK 3 L33: 1.9182 L12: 0.6180 REMARK 3 L13: 1.0717 L23: 1.0111 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: -0.1586 S13: -0.0849 REMARK 3 S21: -0.1615 S22: -0.0047 S23: 0.6156 REMARK 3 S31: 0.1095 S32: -0.4874 S33: -0.0762 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2772 11.8825 122.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.4440 T22: 0.3250 REMARK 3 T33: 0.3764 T12: -0.0100 REMARK 3 T13: -0.0375 T23: -0.0763 REMARK 3 L TENSOR REMARK 3 L11: 1.8573 L22: 2.7691 REMARK 3 L33: 1.9933 L12: 0.8027 REMARK 3 L13: 0.7125 L23: 0.1751 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: 0.3285 S13: -0.7080 REMARK 3 S21: -0.2339 S22: 0.3421 S23: -0.2281 REMARK 3 S31: 0.4075 S32: 0.1177 S33: -0.2268 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7954 16.7370 135.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.6116 T22: 0.6446 REMARK 3 T33: 0.6070 T12: -0.0245 REMARK 3 T13: 0.1115 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 0.9729 L22: 2.4534 REMARK 3 L33: 3.1594 L12: 1.2752 REMARK 3 L13: 0.5058 L23: -0.8416 REMARK 3 S TENSOR REMARK 3 S11: 0.2073 S12: -0.8374 S13: 0.2966 REMARK 3 S21: 1.2100 S22: 0.0174 S23: 0.9063 REMARK 3 S31: -0.1078 S32: -0.7599 S33: -0.0857 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7685 18.2594 112.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.6010 T22: 0.4755 REMARK 3 T33: 0.3955 T12: -0.1204 REMARK 3 T13: -0.2703 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.2641 L22: 0.3754 REMARK 3 L33: 1.7038 L12: -0.4350 REMARK 3 L13: 0.4162 L23: -0.3433 REMARK 3 S TENSOR REMARK 3 S11: -0.0800 S12: 0.7176 S13: -0.0009 REMARK 3 S21: -0.5257 S22: -0.0161 S23: 0.2242 REMARK 3 S31: -0.2618 S32: 0.1111 S33: -0.0342 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0325 24.9475 143.1321 REMARK 3 T TENSOR REMARK 3 T11: 0.5628 T22: 0.3117 REMARK 3 T33: 0.2581 T12: -0.0372 REMARK 3 T13: -0.1175 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 2.2552 L22: 3.0368 REMARK 3 L33: 2.7575 L12: 0.1823 REMARK 3 L13: 0.8868 L23: 1.2202 REMARK 3 S TENSOR REMARK 3 S11: 0.5561 S12: -0.3359 S13: -0.3709 REMARK 3 S21: 0.7068 S22: -0.0050 S23: -0.3260 REMARK 3 S31: 0.2359 S32: -0.1266 S33: 0.3934 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7527 32.3870 144.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.9682 T22: 0.6843 REMARK 3 T33: 0.5804 T12: 0.0505 REMARK 3 T13: 0.1897 T23: -0.2114 REMARK 3 L TENSOR REMARK 3 L11: 0.8485 L22: 2.1694 REMARK 3 L33: 3.2798 L12: 0.6508 REMARK 3 L13: 1.3232 L23: 1.6722 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.9869 S13: 0.5852 REMARK 3 S21: 0.7868 S22: -0.4477 S23: 0.6432 REMARK 3 S31: -0.0622 S32: -0.8522 S33: 0.2649 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7516 27.7211 137.0683 REMARK 3 T TENSOR REMARK 3 T11: 0.3170 T22: 0.2495 REMARK 3 T33: 0.3132 T12: 0.0757 REMARK 3 T13: -0.0609 T23: -0.1164 REMARK 3 L TENSOR REMARK 3 L11: 4.4654 L22: 3.7408 REMARK 3 L33: 2.3864 L12: 2.0108 REMARK 3 L13: 1.7470 L23: 1.2710 REMARK 3 S TENSOR REMARK 3 S11: 0.1532 S12: 0.2695 S13: -0.0835 REMARK 3 S21: 0.3314 S22: 0.2448 S23: -0.4765 REMARK 3 S31: 0.0723 S32: 0.2933 S33: -0.2180 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3427 12.1246 139.9781 REMARK 3 T TENSOR REMARK 3 T11: 0.7616 T22: 0.3581 REMARK 3 T33: 0.5300 T12: -0.0053 REMARK 3 T13: -0.2354 T23: 0.0974 REMARK 3 L TENSOR REMARK 3 L11: 3.6000 L22: 4.6462 REMARK 3 L33: 1.1950 L12: -0.4718 REMARK 3 L13: 1.3139 L23: 1.5383 REMARK 3 S TENSOR REMARK 3 S11: 0.4803 S12: -0.4216 S13: -0.8560 REMARK 3 S21: 1.1158 S22: -0.0790 S23: -0.1221 REMARK 3 S31: 0.5831 S32: -0.2798 S33: -0.2891 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4905 19.8267 152.9076 REMARK 3 T TENSOR REMARK 3 T11: 1.1471 T22: 0.5133 REMARK 3 T33: 0.3916 T12: -0.0485 REMARK 3 T13: -0.2387 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 4.3209 L22: 0.6567 REMARK 3 L33: 0.7814 L12: 0.8602 REMARK 3 L13: 1.7105 L23: 0.1159 REMARK 3 S TENSOR REMARK 3 S11: 0.3724 S12: -1.1761 S13: -0.0755 REMARK 3 S21: 0.9565 S22: -0.2521 S23: -0.1350 REMARK 3 S31: -0.1991 S32: -0.3582 S33: -0.0694 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0364 10.3655 152.4425 REMARK 3 T TENSOR REMARK 3 T11: 1.3787 T22: 0.6163 REMARK 3 T33: 0.7869 T12: -0.1570 REMARK 3 T13: -0.4516 T23: 0.3071 REMARK 3 L TENSOR REMARK 3 L11: 1.3300 L22: 1.6092 REMARK 3 L33: 0.1908 L12: -0.9464 REMARK 3 L13: 0.4531 L23: -0.5069 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.5091 S13: -0.3576 REMARK 3 S21: 0.8044 S22: 0.1494 S23: -0.0013 REMARK 3 S31: -0.1914 S32: -0.1339 S33: -0.3719 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5484 13.9830 147.1186 REMARK 3 T TENSOR REMARK 3 T11: 1.0417 T22: 0.3419 REMARK 3 T33: 0.5525 T12: -0.0742 REMARK 3 T13: -0.3945 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 1.1751 L22: 1.5547 REMARK 3 L33: 2.5816 L12: 1.2328 REMARK 3 L13: 0.5355 L23: -0.2145 REMARK 3 S TENSOR REMARK 3 S11: 0.7133 S12: -0.0532 S13: -0.5919 REMARK 3 S21: -0.0889 S22: -0.0864 S23: -0.3941 REMARK 3 S31: 0.2863 S32: -0.0699 S33: -0.5400 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8889 19.1699 159.1700 REMARK 3 T TENSOR REMARK 3 T11: 1.6582 T22: 0.6546 REMARK 3 T33: 0.7608 T12: -0.2376 REMARK 3 T13: -0.4356 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.1198 L22: 1.7610 REMARK 3 L33: 2.5594 L12: 1.8274 REMARK 3 L13: 0.1024 L23: 0.7784 REMARK 3 S TENSOR REMARK 3 S11: 1.1316 S12: -0.5770 S13: -0.9455 REMARK 3 S21: 0.2289 S22: -0.8245 S23: -0.2531 REMARK 3 S31: 0.7864 S32: -0.2916 S33: -0.6675 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6908 26.7343 151.3695 REMARK 3 T TENSOR REMARK 3 T11: 1.0886 T22: 0.3764 REMARK 3 T33: 0.4393 T12: -0.1292 REMARK 3 T13: -0.3668 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.9757 L22: 0.9120 REMARK 3 L33: 2.4385 L12: 0.2650 REMARK 3 L13: 0.6646 L23: 1.2917 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: -0.1463 S13: -0.1965 REMARK 3 S21: 0.6077 S22: -0.0428 S23: -0.2482 REMARK 3 S31: 0.3734 S32: -0.1524 S33: 0.0420 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1200005664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CYM, 4MI7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, 25% PEG 3350, PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.91100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.49350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.49650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.49350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.91100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.49650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 465 GLN A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 214 REMARK 465 MET B 19 REMARK 465 GLU B 20 REMARK 465 THR B 21 REMARK 465 ASN B 148 REMARK 465 LYS B 149 REMARK 465 ASP B 150 REMARK 465 SER B 151 REMARK 465 SER B 152 REMARK 465 GLN B 153 REMARK 465 SER B 154 REMARK 465 PRO B 155 REMARK 465 SER B 156 REMARK 465 GLN B 157 REMARK 465 VAL B 158 REMARK 465 ASP B 159 REMARK 465 GLN B 160 REMARK 465 PHE B 161 REMARK 465 HIS B 196 REMARK 465 GLN B 197 REMARK 465 SER B 198 REMARK 465 PHE B 199 REMARK 465 PRO B 200 REMARK 465 ASN B 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 42.31 -83.54 REMARK 500 ASN A 59 -169.53 -114.30 REMARK 500 SER A 69 75.17 -68.76 REMARK 500 ALA B 83 -119.15 54.89 REMARK 500 ASN B 180 -1.06 68.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 39 OG1 REMARK 620 2 GDP B 900 O1B 83.4 REMARK 620 3 HOH B1002 O 78.1 67.3 REMARK 620 4 HOH B1005 O 103.2 104.3 171.4 REMARK 620 5 HOH B1009 O 76.6 139.3 74.1 114.5 REMARK 620 6 HOH B1010 O 155.9 91.9 78.3 100.9 92.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CYM RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN VARP-ANKRD1 WITH RAB32-GPPCP REMARK 900 RELATED ID: 4MI7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALMONELLA EFFECTOR PROTEIN GTGE DBREF 5OEC A 21 214 UNP Q6EAT3 Q6EAT3_SALCE 21 214 DBREF 5OEC B 20 201 UNP Q13637 RAB32_HUMAN 20 201 SEQADV 5OEC GLY A 18 UNP Q6EAT3 EXPRESSION TAG SEQADV 5OEC HIS A 19 UNP Q6EAT3 EXPRESSION TAG SEQADV 5OEC MET A 20 UNP Q6EAT3 EXPRESSION TAG SEQADV 5OEC ALA A 45 UNP Q6EAT3 CYS 45 ENGINEERED MUTATION SEQADV 5OEC MET B 19 UNP Q13637 INITIATING METHIONINE SEQADV 5OEC LYS B 147 UNP Q13637 GLN 147 CONFLICT SEQADV 5OEC ASP B 162 UNP Q13637 CYS 162 CONFLICT SEQRES 1 A 197 GLY HIS MET GLN GLY GLN ILE ILE HIS HIS ARG ASN PHE SEQRES 2 A 197 GLN SER GLN PHE ASP THR THR GLY ASN THR LEU TYR ASN SEQRES 3 A 197 ASN ALA TRP VAL CYS SER LEU ASN VAL ILE LYS SER ARG SEQRES 4 A 197 ASP GLY ASN ASN TYR SER ALA LEU GLU ASP ILE THR SER SEQRES 5 A 197 ASP ASN GLN ALA PHE ASN ASN ILE LEU GLU GLY ILE ASP SEQRES 6 A 197 ILE ILE GLU CYS GLU ASN LEU LEU LYS GLU MET ASN VAL SEQRES 7 A 197 GLN MLY ILE PRO GLU SER SER LEU PHE THR ASN ILE MLY SEQRES 8 A 197 GLU ALA LEU GLN ALA GLU VAL PHE ASN SER THR VAL GLU SEQRES 9 A 197 ASP ASP PHE GLU SER PHE ILE SER TYR GLU LEU GLN ASN SEQRES 10 A 197 HIS GLY PRO LEU MET LEU ILE ARG PRO SER LEU GLY SER SEQRES 11 A 197 GLU CYS LEU HIS ALA GLU CYS ILE VAL GLY TYR ASP SER SEQRES 12 A 197 GLU VAL MLY MLY VAL LEU ILE TYR ASP SER MET ASN THR SEQRES 13 A 197 SER PRO GLU TRP GLN SER ASN ILE ASP VAL TYR ASP LYS SEQRES 14 A 197 LEU THR LEU ALA PHE ASN ASP LYS TYR LYS ASN GLU ASP SEQRES 15 A 197 CYS SER ILE CYS GLY LEU TYR TYR ASP GLY VAL TYR GLU SEQRES 16 A 197 PRO LYS SEQRES 1 B 183 MET GLU THR ARG GLU HIS LEU PHE LYS VAL LEU VAL ILE SEQRES 2 B 183 GLY GLU LEU GLY VAL GLY LYS THR SER ILE ILE LYS ARG SEQRES 3 B 183 TYR VAL HIS GLN LEU PHE SER GLN HIS TYR ARG ALA THR SEQRES 4 B 183 ILE GLY VAL ASP PHE ALA LEU MLY VAL LEU ASN TRP ASP SEQRES 5 B 183 SER ARG THR LEU VAL ARG LEU GLN LEU TRP ASP ILE ALA SEQRES 6 B 183 GLY GLN GLU ARG PHE GLY ASN MET THR ARG VAL TYR TYR SEQRES 7 B 183 LYS GLU ALA VAL GLY ALA PHE VAL VAL PHE ASP ILE SER SEQRES 8 B 183 ARG SER SER THR PHE GLU ALA VAL LEU LYS TRP LYS SER SEQRES 9 B 183 ASP LEU ASP SER LYS VAL HIS LEU PRO ASN GLY SER PRO SEQRES 10 B 183 ILE PRO ALA VAL LEU LEU ALA ASN LYS CYS ASP LYS ASN SEQRES 11 B 183 LYS ASP SER SER GLN SER PRO SER GLN VAL ASP GLN PHE SEQRES 12 B 183 ASP MLY GLU HIS GLY PHE ALA GLY TRP PHE GLU THR SER SEQRES 13 B 183 ALA LYS ASP ASN ILE ASN ILE GLU GLU ALA ALA ARG PHE SEQRES 14 B 183 LEU VAL GLU LYS ILE LEU VAL ASN HIS GLN SER PHE PRO SEQRES 15 B 183 ASN MODRES 5OEC MLY A 97 LYS MODIFIED RESIDUE MODRES 5OEC MLY A 108 LYS MODIFIED RESIDUE MODRES 5OEC MLY A 163 LYS MODIFIED RESIDUE MODRES 5OEC MLY A 164 LYS MODIFIED RESIDUE MODRES 5OEC MLY B 65 LYS MODIFIED RESIDUE MODRES 5OEC MLY B 163 LYS MODIFIED RESIDUE HET MLY A 97 11 HET MLY A 108 11 HET MLY A 163 11 HET MLY A 164 11 HET MLY B 65 11 HET MLY B 163 11 HET GDP B 900 28 HET MG B 901 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 MLY 6(C8 H18 N2 O2) FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *55(H2 O) HELIX 1 AA1 ASN A 44 SER A 55 1 12 HELIX 2 AA2 ALA A 63 THR A 68 1 6 HELIX 3 AA3 ILE A 83 MET A 93 1 11 HELIX 4 AA4 SER A 101 GLU A 114 1 14 HELIX 5 AA5 ASN A 117 GLY A 136 1 20 HELIX 6 AA6 ASN A 180 ASN A 192 1 13 HELIX 7 AA7 GLY B 37 GLN B 48 1 12 HELIX 8 AA8 ALA B 83 GLU B 86 5 4 HELIX 9 AA9 THR B 92 LYS B 97 1 6 HELIX 10 AB1 ARG B 110 ALA B 116 1 7 HELIX 11 AB2 ALA B 116 SER B 126 1 11 HELIX 12 AB3 ASN B 180 ASN B 195 1 16 SHEET 1 AA1 2 ILE A 81 ASP A 82 0 SHEET 2 AA1 2 THR B 57 ILE B 58 -1 O ILE B 58 N ILE A 81 SHEET 1 AA2 6 VAL A 95 MLY A 97 0 SHEET 2 AA2 6 GLY A 204 ASP A 208 -1 O TYR A 207 N GLN A 96 SHEET 3 AA2 6 LEU A 138 PRO A 143 -1 N MET A 139 O TYR A 206 SHEET 4 AA2 6 LEU A 150 ASP A 159 -1 O GLU A 153 N LEU A 140 SHEET 5 AA2 6 MLY A 164 TYR A 168 -1 O TYR A 168 N CYS A 154 SHEET 6 AA2 6 GLU A 176 SER A 179 -1 O GLN A 178 N VAL A 165 SHEET 1 AA3 6 ALA B 63 ASP B 70 0 SHEET 2 AA3 6 THR B 73 ASP B 81 -1 O LEU B 77 N MLY B 65 SHEET 3 AA3 6 GLU B 23 GLY B 32 1 N PHE B 26 O GLN B 78 SHEET 4 AA3 6 ALA B 99 ASP B 107 1 O PHE B 103 N LEU B 29 SHEET 5 AA3 6 ALA B 138 ASN B 143 1 O LEU B 141 N VAL B 104 SHEET 6 AA3 6 GLY B 169 PHE B 171 1 O PHE B 171 N ALA B 142 LINK C GLN A 96 N MLY A 97 1555 1555 1.33 LINK C MLY A 97 N ILE A 98 1555 1555 1.33 LINK C ILE A 107 N MLY A 108 1555 1555 1.33 LINK C MLY A 108 N GLU A 109 1555 1555 1.33 LINK C VAL A 162 N MLY A 163 1555 1555 1.33 LINK C MLY A 163 N MLY A 164 1555 1555 1.33 LINK C MLY A 164 N VAL A 165 1555 1555 1.33 LINK C LEU B 64 N MLY B 65 1555 1555 1.33 LINK C MLY B 65 N VAL B 66 1555 1555 1.33 LINK C ASP B 162 N MLY B 163 1555 1555 1.33 LINK C MLY B 163 N GLU B 164 1555 1555 1.33 LINK OG1 THR B 39 MG MG B 901 1555 1555 2.08 LINK O1B GDP B 900 MG MG B 901 1555 1555 2.07 LINK MG MG B 901 O HOH B1002 1555 1555 2.13 LINK MG MG B 901 O HOH B1005 1555 1555 2.09 LINK MG MG B 901 O HOH B1009 1555 1555 2.11 LINK MG MG B 901 O HOH B1010 1555 1555 2.16 SITE 1 AC1 18 LEU B 34 GLY B 35 VAL B 36 GLY B 37 SITE 2 AC1 18 LYS B 38 THR B 39 SER B 40 PHE B 50 SITE 3 AC1 18 GLN B 52 ASN B 143 LYS B 144 ASP B 146 SITE 4 AC1 18 SER B 174 ALA B 175 LYS B 176 MG B 901 SITE 5 AC1 18 HOH B1002 HOH B1010 SITE 1 AC2 7 THR B 39 ASP B 81 GDP B 900 HOH B1002 SITE 2 AC2 7 HOH B1005 HOH B1009 HOH B1010 CRYST1 47.822 66.993 110.987 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020911 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009010 0.00000