PDB Short entry for 5OQP HEADER CELL CYCLE 14-AUG-17 5OQP TITLE CRYSTAL STRUCTURE OF THE S. CEREVISIAE CONDENSIN YCG1-BRN1 SUBCOMPLEX TITLE 2 BOUND TO DNA (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONDENSIN COMPLEX SUBUNIT 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAPG HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: LOOP DELETION; 499-555; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CONDENSIN COMPLEX SUBUNIT 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: BARREN HOMOLOG,CAPH HOMOLOG; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: 384-529; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*GP*AP*TP*GP*TP*GP*TP*AP*GP*CP*TP*AP*CP*AP*CP*AP*TP*C)-3'); COMPND 16 CHAIN: C, D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: YCG1, YCS5, YDR325W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTA (DE3) PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PETMCN; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 15 S288C); SOURCE 16 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 17 ORGANISM_TAXID: 559292; SOURCE 18 GENE: BRN1, YBL097W, YBL0830; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 22 EXPRESSION_SYSTEM_VARIANT: ROSETTA (DE3) PLYSS; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PETMCN; SOURCE 25 MOL_ID: 3; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS KLEISIN, HEAT REPEAT, DNA-BINDING, SMC COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR M.KSCHONSAK,M.HASSLER,C.H.HAERING REVDAT 3 17-JAN-24 5OQP 1 REMARK REVDAT 2 01-NOV-17 5OQP 1 JRNL REVDAT 1 18-OCT-17 5OQP 0 JRNL AUTH M.KSCHONSAK,F.MERKEL,S.BISHT,J.METZ,V.RYBIN,M.HASSLER, JRNL AUTH 2 C.H.HAERING JRNL TITL STRUCTURAL BASIS FOR A SAFETY-BELT MECHANISM THAT ANCHORS JRNL TITL 2 CONDENSIN TO CHROMOSOMES. JRNL REF CELL V. 171 588 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28988770 JRNL DOI 10.1016/J.CELL.2017.09.008 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1764 - 7.1744 1.00 2142 154 0.1706 0.1989 REMARK 3 2 7.1744 - 5.6977 1.00 2047 146 0.2269 0.2340 REMARK 3 3 5.6977 - 4.9784 1.00 2017 145 0.1954 0.2340 REMARK 3 4 4.9784 - 4.5236 1.00 2014 143 0.1734 0.2145 REMARK 3 5 4.5236 - 4.1996 1.00 1981 142 0.1822 0.2302 REMARK 3 6 4.1996 - 3.9521 1.00 1998 142 0.1931 0.2627 REMARK 3 7 3.9521 - 3.7543 1.00 1992 143 0.2199 0.2775 REMARK 3 8 3.7543 - 3.5909 1.00 1964 141 0.2394 0.2813 REMARK 3 9 3.5909 - 3.4527 1.00 1987 142 0.2605 0.3159 REMARK 3 10 3.4527 - 3.3336 1.00 1951 140 0.2840 0.3682 REMARK 3 11 3.3336 - 3.2294 1.00 1983 141 0.3060 0.3389 REMARK 3 12 3.2294 - 3.1371 1.00 1969 141 0.3121 0.3592 REMARK 3 13 3.1371 - 3.0545 1.00 1956 141 0.3207 0.3665 REMARK 3 14 3.0545 - 2.9800 1.00 1951 139 0.3392 0.3829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8278 REMARK 3 ANGLE : 0.547 11327 REMARK 3 CHIRALITY : 0.038 1308 REMARK 3 PLANARITY : 0.003 1315 REMARK 3 DIHEDRAL : 19.592 4925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5OQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200005730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 47.171 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5OQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% (W/V) PEG 4000 0.05 M NA CITRATE PH REMARK 280 6.6 5 MM MGSO4, VAPOR DIFFUSION, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.60550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.41650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.60550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.41650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 GLY A 6 REMARK 465 ILE A 7 REMARK 465 GLU A 188 REMARK 465 GLU A 189 REMARK 465 GLN A 190 REMARK 465 THR A 191 REMARK 465 GLU A 192 REMARK 465 HIS A 193 REMARK 465 LEU A 194 REMARK 465 THR A 195 REMARK 465 GLU A 196 REMARK 465 LEU A 197 REMARK 465 SER A 198 REMARK 465 ASP A 199 REMARK 465 ASN A 200 REMARK 465 GLU A 201 REMARK 465 GLU A 202 REMARK 465 ASN A 203 REMARK 465 ASP A 404 REMARK 465 ILE A 405 REMARK 465 SER A 406 REMARK 465 ASN A 407 REMARK 465 ASP A 408 REMARK 465 SER A 409 REMARK 465 GLN A 410 REMARK 465 GLU A 555 REMARK 465 SER A 556 REMARK 465 GLU A 557 REMARK 465 SER A 558 REMARK 465 ASP A 559 REMARK 465 ILE A 560 REMARK 465 ILE A 561 REMARK 465 ASN A 562 REMARK 465 ASN A 563 REMARK 465 LEU A 564 REMARK 465 PRO A 565 REMARK 465 PRO A 566 REMARK 465 GLU A 567 REMARK 465 GLU A 909 REMARK 465 ARG A 910 REMARK 465 SER A 911 REMARK 465 GLU A 912 REMARK 465 THR A 913 REMARK 465 GLN A 914 REMARK 465 THR A 915 REMARK 465 LYS A 916 REMARK 465 ASP A 917 REMARK 465 GLU A 918 REMARK 465 ASN A 919 REMARK 465 ASN A 920 REMARK 465 THR A 921 REMARK 465 ALA A 922 REMARK 465 ASN A 923 REMARK 465 ASP A 924 REMARK 465 GLN A 925 REMARK 465 TYR A 926 REMARK 465 SER A 927 REMARK 465 SER A 928 REMARK 465 ILE A 929 REMARK 465 LEU A 930 REMARK 465 GLY A 931 REMARK 465 ASN A 932 REMARK 465 GLY B 378 REMARK 465 PRO B 379 REMARK 465 LEU B 380 REMARK 465 GLY B 381 REMARK 465 HIS B 382 REMARK 465 MET B 383 REMARK 465 PHE B 413 REMARK 465 LYS B 414 REMARK 465 LYS B 415 REMARK 465 ALA B 416 REMARK 465 ASN B 417 REMARK 465 LEU B 418 REMARK 465 VAL B 419 REMARK 465 ASN B 420 REMARK 465 LYS B 421 REMARK 465 GLU B 422 REMARK 465 SER B 423 REMARK 465 ASP B 424 REMARK 465 LEU B 425 REMARK 465 LEU B 426 REMARK 465 GLU B 427 REMARK 465 GLU B 428 REMARK 465 THR B 429 REMARK 465 ARG B 430 REMARK 465 THR B 431 REMARK 465 THR B 432 REMARK 465 ILE B 433 REMARK 465 GLY B 434 REMARK 465 ASP B 435 REMARK 465 THR B 436 REMARK 465 THR B 437 REMARK 465 ASP B 438 REMARK 465 LYS B 439 REMARK 465 ASN B 440 REMARK 465 THR B 441 REMARK 465 THR B 442 REMARK 465 ASP B 443 REMARK 465 ASP B 444 REMARK 465 LYS B 445 REMARK 465 SER B 446 REMARK 465 MET B 447 REMARK 465 ASP B 448 REMARK 465 THR B 449 REMARK 465 LYS B 450 REMARK 465 LYS B 451 REMARK 465 LYS B 452 REMARK 465 HIS B 453 REMARK 465 LYS B 454 REMARK 465 GLN B 455 REMARK 465 PHE B 523 REMARK 465 SER B 524 REMARK 465 HIS B 525 REMARK 465 ARG B 526 REMARK 465 LYS B 527 REMARK 465 HIS B 528 REMARK 465 THR B 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 385 H ASP B 389 1.52 REMARK 500 O4 DT C 17 H61 DA D 2 1.58 REMARK 500 O ILE A 788 H VAL A 791 1.58 REMARK 500 O LYS B 478 OG1 THR B 481 2.11 REMARK 500 NH1 ARG B 400 OP1 DA C 12 2.12 REMARK 500 OE1 GLU A 475 OG1 THR A 591 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DG D 1 OP2 DC D 18 3554 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 74 39.31 -81.12 REMARK 500 GLN A 186 -75.73 -63.87 REMARK 500 ASN A 232 61.65 65.02 REMARK 500 ASP A 233 -162.50 -108.31 REMARK 500 ARG A 258 -52.60 -130.04 REMARK 500 HIS A 301 -70.49 -121.72 REMARK 500 ASP A 310 93.77 -69.71 REMARK 500 PRO A 347 178.35 -58.47 REMARK 500 ASN A 474 99.93 177.35 REMARK 500 ALA A 570 154.21 84.51 REMARK 500 LEU A 606 -19.20 -153.31 REMARK 500 ASN A 652 -179.02 -67.04 REMARK 500 THR A 720 -3.87 -144.67 REMARK 500 VAL A 791 -123.27 38.83 REMARK 500 ASP A 792 79.04 65.69 REMARK 500 ALA A 795 4.61 -68.40 REMARK 500 LYS A 824 36.34 -80.95 REMARK 500 ASN A 882 -82.54 -113.59 REMARK 500 ASP A 886 172.87 -59.36 REMARK 500 ARG B 405 -161.68 55.13 REMARK 500 HIS B 407 76.90 -61.72 REMARK 500 LYS B 409 -60.70 -96.71 REMARK 500 VAL B 410 20.71 47.71 REMARK 500 LYS B 457 157.57 -43.72 REMARK 500 ASP B 468 58.75 32.83 REMARK 500 SER B 469 -4.06 68.94 REMARK 500 ASP B 472 -6.46 -55.50 REMARK 500 LYS B 473 8.41 -66.31 REMARK 500 LYS B 482 -61.02 -90.32 REMARK 500 HIS B 495 12.84 59.51 REMARK 500 SER B 521 96.28 -52.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5OQN RELATED DB: PDB REMARK 900 RELATED ID: 5OQO RELATED DB: PDB REMARK 900 RELATED ID: 5OQQ RELATED DB: PDB REMARK 900 RELATED ID: 5OQR RELATED DB: PDB DBREF 5OQP A 6 932 UNP Q06680 CND3_YEAST 6 932 DBREF 5OQP B 384 529 UNP P38170 CND2_YEAST 384 529 DBREF 5OQP C 1 18 PDB 5OQP 5OQP 1 18 DBREF 5OQP D 1 18 PDB 5OQP 5OQP 1 18 SEQADV 5OQP MET A 5 UNP Q06680 INITIATING METHIONINE SEQADV 5OQP A UNP Q06680 GLN 499 DELETION SEQADV 5OQP A UNP Q06680 GLU 500 DELETION SEQADV 5OQP A UNP Q06680 GLU 501 DELETION SEQADV 5OQP A UNP Q06680 LYS 502 DELETION SEQADV 5OQP A UNP Q06680 ILE 503 DELETION SEQADV 5OQP A UNP Q06680 LYS 504 DELETION SEQADV 5OQP A UNP Q06680 SER 505 DELETION SEQADV 5OQP A UNP Q06680 LYS 506 DELETION SEQADV 5OQP A UNP Q06680 LYS 507 DELETION SEQADV 5OQP A UNP Q06680 ILE 508 DELETION SEQADV 5OQP A UNP Q06680 ASN 509 DELETION SEQADV 5OQP A UNP Q06680 ARG 510 DELETION SEQADV 5OQP A UNP Q06680 ARG 511 DELETION SEQADV 5OQP A UNP Q06680 ASN 512 DELETION SEQADV 5OQP A UNP Q06680 GLU 513 DELETION SEQADV 5OQP A UNP Q06680 THR 514 DELETION SEQADV 5OQP A UNP Q06680 SER 515 DELETION SEQADV 5OQP A UNP Q06680 VAL 516 DELETION SEQADV 5OQP A UNP Q06680 ASP 517 DELETION SEQADV 5OQP A UNP Q06680 GLU 518 DELETION SEQADV 5OQP A UNP Q06680 GLU 519 DELETION SEQADV 5OQP A UNP Q06680 ASP 520 DELETION SEQADV 5OQP A UNP Q06680 GLU 521 DELETION SEQADV 5OQP A UNP Q06680 ASN 522 DELETION SEQADV 5OQP A UNP Q06680 GLY 523 DELETION SEQADV 5OQP A UNP Q06680 THR 524 DELETION SEQADV 5OQP A UNP Q06680 HIS 525 DELETION SEQADV 5OQP A UNP Q06680 ASN 526 DELETION SEQADV 5OQP A UNP Q06680 ASP 527 DELETION SEQADV 5OQP A UNP Q06680 GLU 528 DELETION SEQADV 5OQP A UNP Q06680 VAL 529 DELETION SEQADV 5OQP A UNP Q06680 ASN 530 DELETION SEQADV 5OQP A UNP Q06680 GLU 531 DELETION SEQADV 5OQP A UNP Q06680 ASP 532 DELETION SEQADV 5OQP A UNP Q06680 GLU 533 DELETION SEQADV 5OQP A UNP Q06680 GLU 534 DELETION SEQADV 5OQP A UNP Q06680 ASP 535 DELETION SEQADV 5OQP A UNP Q06680 ASP 536 DELETION SEQADV 5OQP A UNP Q06680 ASN 537 DELETION SEQADV 5OQP A UNP Q06680 ILE 538 DELETION SEQADV 5OQP A UNP Q06680 SER 539 DELETION SEQADV 5OQP A UNP Q06680 SER 540 DELETION SEQADV 5OQP A UNP Q06680 PHE 541 DELETION SEQADV 5OQP A UNP Q06680 HIS 542 DELETION SEQADV 5OQP A UNP Q06680 SER 543 DELETION SEQADV 5OQP A UNP Q06680 ALA 544 DELETION SEQADV 5OQP A UNP Q06680 VAL 545 DELETION SEQADV 5OQP A UNP Q06680 GLU 546 DELETION SEQADV 5OQP A UNP Q06680 ASN 547 DELETION SEQADV 5OQP A UNP Q06680 LEU 548 DELETION SEQADV 5OQP A UNP Q06680 VAL 549 DELETION SEQADV 5OQP A UNP Q06680 GLN 550 DELETION SEQADV 5OQP A UNP Q06680 GLY 551 DELETION SEQADV 5OQP A UNP Q06680 ASN 552 DELETION SEQADV 5OQP A UNP Q06680 GLY 553 DELETION SEQADV 5OQP A UNP Q06680 ASN 554 DELETION SEQADV 5OQP A UNP Q06680 VAL 555 DELETION SEQADV 5OQP GLY B 378 UNP P38170 EXPRESSION TAG SEQADV 5OQP PRO B 379 UNP P38170 EXPRESSION TAG SEQADV 5OQP LEU B 380 UNP P38170 EXPRESSION TAG SEQADV 5OQP GLY B 381 UNP P38170 EXPRESSION TAG SEQADV 5OQP HIS B 382 UNP P38170 EXPRESSION TAG SEQADV 5OQP MET B 383 UNP P38170 EXPRESSION TAG SEQRES 1 A 869 MET GLY ILE ASP ILE ASN THR LYS ILE PHE ASN SER VAL SEQRES 2 A 869 ALA GLU VAL PHE GLN LYS ALA GLN GLY SER TYR ALA GLY SEQRES 3 A 869 HIS ARG LYS HIS ILE ALA VAL LEU LYS LYS ILE GLN SER SEQRES 4 A 869 LYS ALA VAL GLU GLN GLY TYR GLU ASP ALA PHE ASN PHE SEQRES 5 A 869 TRP PHE ASP LYS LEU VAL THR LYS ILE LEU PRO LEU LYS SEQRES 6 A 869 LYS ASN GLU ILE ILE ASP ARG ILE VAL LYS LEU VAL ALA SEQRES 7 A 869 ALA PHE ILE ALA SER LEU GLU ARG GLU LEU ILE LEU ALA SEQRES 8 A 869 LYS LYS GLN ASN TYR LYS LEU THR ASN ASP GLU GLU GLY SEQRES 9 A 869 ILE PHE SER ARG PHE VAL ASP GLN PHE ILE ARG HIS VAL SEQRES 10 A 869 LEU ARG GLY VAL GLU SER PRO ASP LYS ASN VAL ARG PHE SEQRES 11 A 869 ARG VAL LEU GLN LEU LEU ALA VAL ILE MET ASP ASN ILE SEQRES 12 A 869 GLY GLU ILE ASP GLU SER LEU PHE ASN LEU LEU ILE LEU SEQRES 13 A 869 SER LEU ASN LYS ARG ILE TYR ASP ARG GLU PRO THR VAL SEQRES 14 A 869 ARG ILE GLN ALA VAL PHE CYS LEU THR LYS PHE GLN ASP SEQRES 15 A 869 GLU GLU GLN THR GLU HIS LEU THR GLU LEU SER ASP ASN SEQRES 16 A 869 GLU GLU ASN PHE GLU ALA THR ARG THR LEU VAL ALA SER SEQRES 17 A 869 ILE GLN ASN ASP PRO SER ALA GLU VAL ARG ARG ALA ALA SEQRES 18 A 869 MET LEU ASN LEU ILE ASN ASP ASN ASN THR ARG PRO TYR SEQRES 19 A 869 ILE LEU GLU ARG ALA ARG ASP VAL ASN ILE VAL ASN ARG SEQRES 20 A 869 ARG LEU VAL TYR SER ARG ILE LEU LYS SER MET GLY ARG SEQRES 21 A 869 LYS CYS PHE ASP ASP ILE GLU PRO HIS ILE PHE ASP GLN SEQRES 22 A 869 LEU ILE GLU TRP GLY LEU GLU ASP ARG GLU LEU SER VAL SEQRES 23 A 869 ARG ASN ALA CYS LYS ARG LEU ILE ALA HIS ASP TRP LEU SEQRES 24 A 869 ASN ALA LEU ASP GLY ASP LEU ILE GLU LEU LEU GLU LYS SEQRES 25 A 869 LEU ASP VAL SER ARG SER SER VAL CYS VAL LYS ALA ILE SEQRES 26 A 869 GLU ALA LEU PHE GLN SER ARG PRO ASP ILE LEU SER LYS SEQRES 27 A 869 ILE LYS PHE PRO SER ILE TRP LYS ASP PHE THR VAL GLU SEQRES 28 A 869 ILE ALA PHE LEU PHE ARG ALA ILE TYR LEU TYR CYS LEU SEQRES 29 A 869 ASP ASN ASN ILE THR GLU MET LEU GLU GLU ASN PHE PRO SEQRES 30 A 869 GLU ALA SER LYS LEU SER GLU HIS LEU ASN HIS TYR ILE SEQRES 31 A 869 LEU LEU ARG TYR HIS HIS ASN ASP ILE SER ASN ASP SER SEQRES 32 A 869 GLN SER HIS PHE ASP TYR ASN THR LEU GLU PHE ILE ILE SEQRES 33 A 869 GLU GLN LEU SER ILE ALA ALA GLU ARG TYR ASP TYR SER SEQRES 34 A 869 ASP GLU VAL GLY ARG ARG SER MET LEU THR VAL VAL ARG SEQRES 35 A 869 ASN MET LEU ALA LEU THR THR LEU SER GLU PRO LEU ILE SEQRES 36 A 869 LYS ILE GLY ILE ARG VAL MET LYS SER LEU SER ILE ASN SEQRES 37 A 869 GLU LYS ASP PHE VAL THR MET ALA ILE GLU ILE ILE ASN SEQRES 38 A 869 ASP ILE ARG ASP ASP ASP ILE GLU LYS GLN GLU SER GLU SEQRES 39 A 869 SER ASP ILE ILE ASN ASN LEU PRO PRO GLU LYS GLU ALA SEQRES 40 A 869 SER SER ALA THR ILE VAL LEU CYS LEU THR ARG SER SER SEQRES 41 A 869 TYR MET LEU GLU LEU VAL ASN THR PRO LEU THR GLU ASN SEQRES 42 A 869 ILE LEU ILE ALA SER LEU MET ASP THR LEU ILE THR PRO SEQRES 43 A 869 ALA VAL ARG ASN THR ALA PRO ASN ILE ARG GLU LEU GLY SEQRES 44 A 869 VAL LYS ASN LEU GLY LEU CYS CYS LEU LEU ASP VAL LYS SEQRES 45 A 869 LEU ALA ILE ASP ASN MET TYR ILE LEU GLY MET CYS VAL SEQRES 46 A 869 SER LYS GLY ASN ALA SER LEU LYS TYR ILE ALA LEU GLN SEQRES 47 A 869 VAL ILE VAL ASP ILE PHE SER VAL HIS GLY ASN THR VAL SEQRES 48 A 869 VAL ASP GLY GLU GLY LYS VAL ASP SER ILE SER LEU HIS SEQRES 49 A 869 LYS ILE PHE TYR LYS VAL LEU LYS ASN ASN GLY LEU PRO SEQRES 50 A 869 GLU CYS GLN VAL ILE ALA ALA GLU GLY LEU CYS LYS LEU SEQRES 51 A 869 PHE LEU ALA ASP VAL PHE THR ASP ASP ASP LEU PHE GLU SEQRES 52 A 869 THR LEU VAL LEU SER TYR PHE SER PRO ILE ASN SER SER SEQRES 53 A 869 ASN GLU ALA LEU VAL GLN ALA PHE ALA PHE CYS ILE PRO SEQRES 54 A 869 VAL TYR CYS PHE SER HIS PRO ALA HIS GLN GLN ARG MET SEQRES 55 A 869 SER ARG THR ALA ALA ASP ILE LEU LEU ARG LEU CYS VAL SEQRES 56 A 869 LEU TRP ASP ASP LEU GLN SER SER VAL ILE PRO GLU VAL SEQRES 57 A 869 ASP ARG GLU ALA MET LEU LYS PRO ASN ILE ILE PHE GLN SEQRES 58 A 869 GLN LEU LEU PHE TRP THR ASP PRO ARG ASN LEU VAL ASN SEQRES 59 A 869 GLN THR GLY SER THR LYS LYS ASP THR VAL GLN LEU THR SEQRES 60 A 869 PHE LEU ILE ASP VAL LEU LYS ILE TYR ALA GLN ILE GLU SEQRES 61 A 869 LYS LYS GLU ILE LYS LYS MET ILE ILE THR ASN ILE ASN SEQRES 62 A 869 ALA ILE PHE LEU SER SER GLU GLN ASP TYR SER THR LEU SEQRES 63 A 869 LYS GLU LEU LEU GLU TYR SER ASP ASP ILE ALA GLU ASN SEQRES 64 A 869 ASP ASN LEU ASP ASN VAL SER LYS ASN ALA LEU ASP LYS SEQRES 65 A 869 LEU ARG ASN ASN LEU ASN SER LEU ILE GLU GLU ILE ASN SEQRES 66 A 869 GLU ARG SER GLU THR GLN THR LYS ASP GLU ASN ASN THR SEQRES 67 A 869 ALA ASN ASP GLN TYR SER SER ILE LEU GLY ASN SEQRES 1 B 152 GLY PRO LEU GLY HIS MET SER ILE PHE GLU LYS ASP LEU SEQRES 2 B 152 MET ALA TYR PHE ASP GLU ASN LEU ASN ARG ASN TRP ARG SEQRES 3 B 152 GLY ARG GLU HIS TRP LYS VAL ARG ASN PHE LYS LYS ALA SEQRES 4 B 152 ASN LEU VAL ASN LYS GLU SER ASP LEU LEU GLU GLU THR SEQRES 5 B 152 ARG THR THR ILE GLY ASP THR THR ASP LYS ASN THR THR SEQRES 6 B 152 ASP ASP LYS SER MET ASP THR LYS LYS LYS HIS LYS GLN SEQRES 7 B 152 LYS LYS VAL LEU GLU ILE ASP PHE PHE LYS THR ASP ASP SEQRES 8 B 152 SER PHE GLU ASP LYS VAL PHE ALA SER LYS GLY ARG THR SEQRES 9 B 152 LYS ILE ASP MET PRO ILE LYS ASN ARG LYS ASN ASP THR SEQRES 10 B 152 HIS TYR LEU LEU PRO ASP ASP PHE HIS PHE SER THR ASP SEQRES 11 B 152 ARG ILE THR ARG LEU PHE ILE LYS PRO GLY GLN LYS MET SEQRES 12 B 152 SER LEU PHE SER HIS ARG LYS HIS THR SEQRES 1 C 18 DG DA DT DG DT DG DT DA DG DC DT DA DC SEQRES 2 C 18 DA DC DA DT DC SEQRES 1 D 18 DG DA DT DG DT DG DT DA DG DC DT DA DC SEQRES 2 D 18 DA DC DA DT DC HET 1PE A1001 38 HET SO4 A1002 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 5 1PE C10 H22 O6 FORMUL 6 SO4 O4 S 2- HELIX 1 AA1 ASP A 8 GLN A 25 1 18 HELIX 2 AA2 GLY A 30 GLN A 48 1 19 HELIX 3 AA3 TYR A 50 THR A 63 1 14 HELIX 4 AA4 ASP A 76 ASN A 100 1 25 HELIX 5 AA5 ASP A 106 LEU A 123 1 18 HELIX 6 AA6 ARG A 124 VAL A 126 5 3 HELIX 7 AA7 ASP A 130 MET A 145 1 16 HELIX 8 AA8 ASP A 152 ILE A 167 1 16 HELIX 9 AA9 GLU A 171 THR A 183 1 13 HELIX 10 AB1 LYS A 184 GLN A 186 5 3 HELIX 11 AB2 GLU A 205 ASP A 217 1 13 HELIX 12 AB3 SER A 219 LEU A 230 1 12 HELIX 13 AB4 THR A 236 GLU A 242 1 7 HELIX 14 AB5 ARG A 243 ASP A 246 5 4 HELIX 15 AB6 ASN A 248 ARG A 258 1 11 HELIX 16 AB7 ARG A 258 GLY A 264 1 7 HELIX 17 AB8 ARG A 265 ILE A 271 1 7 HELIX 18 AB9 GLU A 272 ASP A 286 1 15 HELIX 19 AC1 GLU A 288 HIS A 301 1 14 HELIX 20 AC2 HIS A 301 LEU A 307 1 7 HELIX 21 AC3 ASP A 310 LEU A 318 1 9 HELIX 22 AC4 ARG A 322 ARG A 337 1 16 HELIX 23 AC5 ARG A 337 ILE A 344 1 8 HELIX 24 AC6 THR A 355 ASN A 372 1 18 HELIX 25 AC7 ILE A 374 ASN A 381 1 8 HELIX 26 AC8 GLU A 384 HIS A 401 1 18 HELIX 27 AC9 HIS A 412 ARG A 431 1 20 HELIX 28 AD1 ASP A 436 ALA A 452 1 17 HELIX 29 AD2 SER A 457 ILE A 473 1 17 HELIX 30 AD3 ASN A 474 LYS A 496 1 23 HELIX 31 AD4 SER A 571 GLU A 587 1 17 HELIX 32 AD5 PRO A 592 GLU A 595 5 4 HELIX 33 AD6 ASN A 596 LEU A 606 1 11 HELIX 34 AD7 LEU A 606 ARG A 612 1 7 HELIX 35 AD8 ALA A 615 LEU A 631 1 17 HELIX 36 AD9 ASP A 633 GLY A 651 1 19 HELIX 37 AE1 ASN A 652 GLY A 671 1 20 HELIX 38 AE2 ASN A 672 VAL A 675 5 4 HELIX 39 AE3 ASP A 682 ASN A 696 1 15 HELIX 40 AE4 LEU A 699 ALA A 716 1 18 HELIX 41 AE5 ASP A 721 SER A 734 1 14 HELIX 42 AE6 PRO A 735 SER A 739 5 5 HELIX 43 AE7 ASN A 740 HIS A 758 1 19 HELIX 44 AE8 HIS A 758 SER A 786 1 29 HELIX 45 AE9 LYS A 798 THR A 810 1 13 HELIX 46 AF1 ASP A 811 LEU A 815 5 5 HELIX 47 AF2 THR A 826 TYR A 839 1 14 HELIX 48 AF3 ALA A 840 ILE A 842 5 3 HELIX 49 AF4 LYS A 844 THR A 853 1 10 HELIX 50 AF5 ASN A 854 ILE A 858 5 5 HELIX 51 AF6 ASP A 865 ASN A 882 1 18 HELIX 52 AF7 ASP A 886 GLU A 906 1 21 HELIX 53 AF8 ILE B 385 GLU B 396 1 12 HELIX 54 AF9 LEU B 398 TRP B 402 5 5 HELIX 55 AG1 GLU B 471 ALA B 476 5 6 HELIX 56 AG2 SER B 505 ARG B 511 1 7 SITE 1 AC1 6 ASN A 10 THR A 11 PHE A 14 TRP A 57 SITE 2 AC1 6 ALA A 653 LEU A 699 SITE 1 AC2 5 GLU A 90 ASP A 146 ASN A 147 GLU A 881 SITE 2 AC2 5 ASN A 882 CRYST1 80.140 114.833 155.211 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006443 0.00000